Library    |     Search    |     Batch query    |     SNP    |     SSR  

TAIR blast output of UN11748


BLASTX 7.6.2

Query= UN11748 /QuerySize=1225
        (1224 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT5G41270.1 | Symbols:  | FUNCTIONS IN: molecular...    319   4e-087

>TAIR9_protein||AT5G41270.1 | Symbols:  | FUNCTIONS IN: molecular_function
        unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
        cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED
        DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RNAse P,
        Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 45 Blast hits to 45
        proteins in 15 species: Archae - 0; Bacteria - 21; Metazoa - 8; Fungi -
        0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
        | chr5:16507797-16508813 FORWARD

          Length = 259

 Score =  319 bits (815), Expect = 4e-087
 Identities = 180/275 (65%), Positives = 210/275 (76%), Gaps = 26/275 (9%)
 Frame = -3

Query: 856 MGKRGGANKLTKAQ--GGPNLKSVLRHEHLKNLALWSTGGDSPIPSLATFFGRRLAADGQ 683
           MGKR G  KLT  Q  GGPNLKSVLRHEHLKNLALWS+ GD+PIPSLA+  GRRLAAD +
Sbjct:   1 MGKR-GPKKLTNTQGGGGPNLKSVLRHEHLKNLALWSSTGDTPIPSLASLLGRRLAADTE 59

Query: 682 ASDIPHDPDLFSCQRCETVLQPGFNCNVRIDKVSANKKKHMRRRYKKKPNMFPPQNNVVY 503
           ++ I  DPDL SCQRCET+L+PGFNCNVRI+KVSAN KK  R R KK  N+  PQNNVVY
Sbjct:  60 STGITTDPDLVSCQRCETILKPGFNCNVRIEKVSANVKK-KRNRCKKSNNICFPQNNVVY 118

Query: 502 YCNLCSHRNLKRGTTKGQMKDMYPPKPKTTR-PRPKIDKDVTMVVAPQEIQ--LPSSPER 332
           +CN CSHRNLKRGT KGQMK++YP KPKT R  RPKI K++TM   PQEIQ  + SSPER
Sbjct: 119 HCNFCSHRNLKRGTAKGQMKELYPFKPKTARSSRPKIKKEMTM---PQEIQSNMLSSPER 175

Query: 331 RVEN---VSVVENTPKP-MLTLEREKRIRRSKSKKPVDPESVPEKKATVGGGGGGGGSNK 164
            V++      V +TPKP MLTLER++RIR+ KSKKP +P+SVPEK          GGSNK
Sbjct: 176 SVKDQVEEKSVGDTPKPMMLTLERDRRIRKPKSKKPSEPQSVPEKTV--------GGSNK 227

Query: 163 RKRKA-WTSMKELSETTTTNQSSSSVNFKIPFVL* 62
           RKRK+ WTSMKE++E   TN+SS + NFKIPF+L*
Sbjct: 228 RKRKSPWTSMKEIAE---TNKSSKAGNFKIPFLL* 259

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,366,841,336
Number of Sequences: 33410
Number of Extensions: 6366841336
Number of Successful Extensions: 227048581
Number of sequences better than 0.0: 0