BLASTX 7.6.2

Query= UN12855 /QuerySize=1489
        (1488 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT3G13940.1 | Symbols:  | DNA binding / DNA-direc...    285   8e-077

>TAIR9_protein||AT3G13940.1 | Symbols:  | DNA binding / DNA-directed RNA
        polymerase | chr3:4600647-4602412 REVERSE

          Length = 443

 Score =  285 bits (727), Expect = 8e-077
 Identities = 142/232 (61%), Positives = 178/232 (76%), Gaps = 4/232 (1%)
 Frame = +2

Query:  668 QKTLENKLDKLDVNISALEGANAIVARNIPPHNASATNPRDAYPIEQIIEKGEWGSLQDV 847
            QK L+ KL +L VN +ALEG ++ VARNIPP+N +AT   +AYP+E+IIEKG+W  L+D+
Sbjct:  216 QKVLDGKLSELGVNTAALEGTSSTVARNIPPYNTAATTANEAYPLEKIIEKGDWSFLEDI 275

Query:  848 YRLLQQEAGAAAATEAYPAFVRNRLFRLRDNKDETEKETVAGILTLLTHLIKFKDVNSMV 1027
            Y LLQQE    AATEAYP FVRNRL+RLRD KD+ +K+TV G  TLLTHL+KFKD NSM 
Sbjct:  276 YWLLQQE--TEAATEAYPVFVRNRLYRLRDIKDDMKKQTVCGAATLLTHLVKFKDRNSMN 333

Query: 1028 GVDSARKHHFPGMIRDKCNRLFKDSDTGGRRIPDDKVNLLISYVLVLSLHVDKFKTDFED 1207
            G DSA+ H  P + R K N +FKDS++   RIP DK+NLLISYVLVLSLHVD F TD ED
Sbjct:  334 GYDSAKDHKMPDIFRQKFNSMFKDSESD--RIPVDKINLLISYVLVLSLHVDNFMTDPED 391

Query: 1208 IAKDLRMSSMDVRRHFENLGCKFSVENSIRFATLPVPLQFPQITRRRKRQR* 1363
            IAKDLR+S++++R+HF  LGCKF  +NS   ATLP PL FP++ RRR+ ++*
Sbjct:  392 IAKDLRISTVELRKHFLQLGCKFLKQNSTTVATLPTPLNFPEVNRRRRARK* 443


 Score =  167 bits (421), Expect = 2e-041
 Identities = 98/214 (45%), Positives = 134/214 (62%), Gaps = 13/214 (6%)
 Frame = +3

Query:  39 KHQNDHMDEEGDDFKTPLPLEKKKKRKKTTTTKKTTTTTIETGSIDITSVKTISEKPDRI 218
           + +ND+ +EE +DF TP  L+KK+++ K   T+  T    E        V  ++E+PDRI
Sbjct:   4 EEKNDYRNEE-EDFNTPQQLQKKQRKGKKIATE--TEDENEEDKRVTLKVTQVAERPDRI 60

Query: 219 SPIVAYFASGYDP------SSKSKEAPPKVTVYKNA--SKKRTEVVVSPPGSNVEFVGSS 374
           SPIVAYF++GYDP      + K     PKVTVYK+   SKKR +VVVSPPG+ VEFVG++
Sbjct:  61 SPIVAYFSTGYDPCKVDPKTGKRVHETPKVTVYKHKDDSKKRIQVVVSPPGARVEFVGTN 120

Query: 375 HAGGQVARQTCVYTLGVLDKETQTLRILPIAHQKVLRLETRVKAKETVDSEGGEGASNTE 554
           + G Q A QT  Y +GV ++E +TLRILP+AH K++RLE RVKA+ET + E    A   E
Sbjct: 121 YTGEQAAMQTNTYRVGVFNREAKTLRILPVAHNKIIRLEPRVKAQETNEEEASGSAVVKE 180

Query: 555 AGEEEEADPRRRTFWTKRAILDDKKRSARVLRDD 656
              EE     R  + TK+A+  DKK+ A  + DD
Sbjct: 181 L--EELKTGERDRYNTKKAVTRDKKKRALYMGDD 212

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,805,268,470
Number of Sequences: 33410
Number of Extensions: 6805268470
Number of Successful Extensions: 232615960
Number of sequences better than 0.0: 0