BLASTX 7.6.2
Query= UN12973 /QuerySize=1294
(1293 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Or... 74 2e-012
sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Tr... 64 3e-009
sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio... 62 1e-008
sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 O... 61 1e-008
sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Ar... 61 1e-008
sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=T... 60 3e-008
sp|Q54PM6|Y8605_DICDI Uncharacterized protein DDB_G0284459 OS=Di... 60 4e-008
sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=... 59 5e-008
sp|Q04750|TOP1_MOUSE DNA topoisomerase 1 OS=Mus musculus GN=Top1... 57 2e-007
sp|P19426|NELFE_MOUSE Negative elongation factor E OS=Mus muscul... 57 3e-007
sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=A... 57 3e-007
sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=... 56 6e-007
sp|Q0V898|NELFE_BOVIN Negative elongation factor E OS=Bos taurus... 54 2e-006
sp|Q54WE5|PRP4B_DICDI Serine/threonine-protein kinase prpf4B OS=... 54 3e-006
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa
subsp. japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 74 bits (181), Expect = 2e-012
Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 7/90 (7%)
Frame = +1
Query: 679 PKSKRGSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGD 858
P+ K ++KD+ ++H DR++D R+ + K + KDR K++D+DRDR K+++ HH
Sbjct: 31 PRDKDREREKDKDRERHRDRDRDRGRDRDRDKDKEKDRDKERDRDRDRDKDRDRHH---- 86
Query: 859 HFKKHHDKKRKHDGDEDLNDVHRHKKNKHR 948
+HH ++R+H D +D HR + ++ R
Sbjct: 87 ---RHHRERREHRDRSDDHDRHRSRDSERR 113
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 64 bits (153), Expect = 3e-009
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Frame = +1
Query: 697 SKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDHFKKHH 876
SK +DR +K +D+E+ DR+ + + R + R +D DKDRDR K+++ H ++HH
Sbjct: 31 SKSRDRDREKDKDKERHRDRDRDRGRDRDRGRDRDLDKDRDRDKDRDRH-------QRHH 83
Query: 877 DKKRKHDGDEDLNDVHRHKKNKHRSSK 957
KR+H D +D HR + ++ R +
Sbjct: 84 RDKREHRDRPDDHDRHRSRDSERRRDR 110
Score = 59 bits (141), Expect = 7e-008
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +1
Query: 697 SKDKDRKHKKHEDREKDIDREHKKHKHRHKDR--SKDKDKDRDRKKEKNGHHDSGDHFKK 870
S+D+DR+ K ++R +D DR+ + + R +DR KD+D+D+DR + + H D +H +
Sbjct: 33 SRDRDREKDKDKERHRDRDRDRGRDRDRGRDRDLDKDRDRDKDRDRHQRHHRDKREHRDR 92
Query: 871 --HHDKKRKHDGDEDLNDVHRHKKNKHRS 951
HD+ R D E D R +HRS
Sbjct: 93 PDDHDRHRSRD-SERRRDRERDGHRRHRS 120
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1
PE=2 SV=1
Length = 629
Score = 62 bits (148), Expect = 1e-008
Identities = 26/78 (33%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +1
Query: 682 KSKRGSKDKDRKHKKHEDREKD--IDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSG 855
+ + +KD+DR K DREKD ++E ++ K R++++ +++DKDRD+KKE+ H D
Sbjct: 204 RERERTKDRDRDKDKSRDREKDKTREKEREREKDRNREKERERDKDRDKKKERESHKDRE 263
Query: 856 DHFKKHHDKKRKHDGDED 909
+ +K+R+ + D++
Sbjct: 264 RDKDREREKRREKEKDKE 281
>sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 OS=Homo sapiens
GN=SFRS12 PE=1 SV=1
Length = 508
Score = 61 bits (147), Expect = 1e-008
Identities = 28/89 (31%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +1
Query: 700 KDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDHFKKHHD 879
K K+++ K +DREK+ +RE ++ K + + ++KD+DK+R++ +EK+ D +K H+
Sbjct: 267 KIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHE 326
Query: 880 KKRKHDGDEDLNDVHRHKKNKHRSSKLDE 966
K R D +++ ++ K RS ++DE
Sbjct: 327 KDR--DKEKEKEQDKEKEREKDRSKEIDE 353
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis
thaliana GN=U2AF65B PE=2 SV=2
Length = 589
Score = 61 bits (147), Expect = 1e-008
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Frame = +1
Query: 655 EKGAPTIPPKSKRGSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEK 834
+K + I K +DKD K DREKD DRE K R +DR K +D+DRDR++ K
Sbjct: 43 KKDSSKISEKDNENGRDKD--GNKDRDREKDRDRE----KSRDRDREKSRDRDRDRERSK 96
Query: 835 NGHHDSGDHFKKHHDKKRKHDGDEDLNDVHRHKKNKHRSSK 957
+ D H +H D+ R+ D D H++++ R +
Sbjct: 97 DRQRDR-HHRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRR 136
>sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1
Length = 767
Score = 60 bits (144), Expect = 3e-008
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Frame = +1
Query: 724 KHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDHFKKHHDKKRKHDGD 903
KH+D+ HK +HRHK+ KDKDKDR++ K N H + K +K + DG
Sbjct: 23 KHKDK-------HKDREHRHKEHKKDKDKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGS 75
Query: 904 EDLN-DVHRHK-KNKHRSSKLDEMGAVRV 984
D + D H+ + K K + K+ G ++
Sbjct: 76 SDKHKDKHKDRDKEKRKEEKIRAAGDAKI 104
>sp|Q54PM6|Y8605_DICDI Uncharacterized protein DDB_G0284459 OS=Dictyostelium
discoideum GN=DDB_G0284459 PE=4 SV=1
Length = 1224
Score = 60 bits (143), Expect = 4e-008
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Frame = +1
Query: 691 RGSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSG---DH 861
RG D+DR DR++D DR+ + + R +DR D+D+DRDR ++++ D G D
Sbjct: 828 RGEGDRDRDRSGRSDRDRDRDRDRDRDRDRDRDRGNDRDRDRDRDRDRDRGRDRGSDRDR 887
Query: 862 FKKHHDKKRKHDGDEDLNDVHRHKKNKHRSSKLD 963
+K + + + + N+ + + N + ++K D
Sbjct: 888 DRKDSNSNNNSNNNNNNNNNNNNNNNNNNNNKKD 921
>sp|B2RY56|RBM25_MOUSE RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1
SV=1
Length = 841
Score = 59 bits (142), Expect = 5e-008
Identities = 26/98 (26%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
Frame = +1
Query: 682 KSKRGSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDH 861
+ + +D+DR ++ DRE+D DR+ ++ R+KDRS+ ++K RDR++E+ +
Sbjct: 345 RERERDRDRDRTKERDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERER--- 401
Query: 862 FKKHHDKKRKHDGDEDLNDVHRHKKNKHRSSKLDEMGA 975
++ +++R+ + + + +K+K R + DE A
Sbjct: 402 -EREREREREREREREREREREREKDKKRDREEDEEDA 438
Score = 54 bits (127), Expect = 3e-006
Identities = 21/89 (23%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Frame = +1
Query: 682 KSKRGSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDH 861
+ + ++++R+ +K +RE++ DR+ + K R +DR +D+D+DR+R ++N D
Sbjct: 327 REREREREREREKEKERERERERDRDRDRTKERDRDRERDRDRDRERSSDRN--KDRSRS 384
Query: 862 FKKHHDKKRKHDGDEDLNDVHRHKKNKHR 948
+K D++R+ + + + ++ + R
Sbjct: 385 REKSRDRERERERERERERERERERERER 413
>sp|Q04750|TOP1_MOUSE DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2
Length = 767
Score = 57 bits (137), Expect = 2e-007
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Frame = +1
Query: 724 KHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDHFKKHHDK---KRKH 894
KH+D+ HK +HRHK+ KDKDKDR++ K N H D KKH +K K K
Sbjct: 23 KHKDK-------HKDREHRHKEHKKDKDKDREKSKHSNSEHK--DSEKKHKEKEKTKHKD 73
Query: 895 DGDEDLNDVHRHK-KNKHRSSKLDEMGAVRV 984
E D H+ + K + + K+ G ++
Sbjct: 74 GSSEKHKDKHKDRDKERRKEEKIRAAGDAKI 104
>sp|P19426|NELFE_MOUSE Negative elongation factor E OS=Mus musculus GN=Rdbp PE=1
SV=2
Length = 375
Score = 57 bits (136), Expect = 3e-007
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Frame = +1
Query: 676 PPKSKRGSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSG 855
PP+ S+ +DR H + DR++D +R+ + + R +DR KDKD+DRDR ++K D
Sbjct: 182 PPR----SRSRDRSHDRSRDRDRDKERDRDRDRDRDRDRDKDKDRDRDRDRDKERDRDR- 236
Query: 856 DHFKKHHDKKRKHDGDEDLNDVHRHKKNKHRSSKL 960
+ D++R +G +D ++ + + L
Sbjct: 237 ---DRDRDRERDREGPFRRSDSFPERRAPRKGNTL 268
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis
thaliana GN=RH21 PE=2 SV=1
Length = 733
Score = 57 bits (136), Expect = 3e-007
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Frame = +1
Query: 697 SKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDHFKKHH 876
++DKDR + DRE+D DRE + + R +DR +D+D+DRDR++E++ D + ++
Sbjct: 71 NRDKDRDRDRDRDRERDRDRE--RDRGRDRDRDRDRDRDRDRERERDRERDRRERDREPD 128
Query: 877 DKKRKHDGDEDLNDVHRHKKNK----HRSSKLDEMGAVRVGG 990
+ R+ + +E++ + + K + +LD + +GG
Sbjct: 129 RRNREKEREEEVKAREKARVEKLVEREKEKELDAIKEQYLGG 170
>sp|P49756|RBM25_HUMAN RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1
SV=3
Length = 843
Score = 56 bits (133), Expect = 6e-007
Identities = 20/89 (22%), Positives = 52/89 (58%)
Frame = +1
Query: 682 KSKRGSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDH 861
+ + ++++R+ +K +RE++ DR+ + K R +DR +++D+DRDR++ + + D
Sbjct: 325 REREREREREREKEKERERERERDRDRDRTKERDRDRDRERDRDRDRERSSDRNKDRSRS 384
Query: 862 FKKHHDKKRKHDGDEDLNDVHRHKKNKHR 948
+K D++R+ + + + ++ + R
Sbjct: 385 REKSRDRERERERERERERERERERERER 413
>sp|Q0V898|NELFE_BOVIN Negative elongation factor E OS=Bos taurus GN=RDBP PE=2
SV=1
Length = 374
Score = 54 bits (129), Expect = 2e-006
Identities = 22/73 (30%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +1
Query: 676 PPKSKR--GSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHD 849
PP+S+ S++++R + DRE+D +R+ + + R +DR +D+D+DRDR++++ G
Sbjct: 182 PPRSRSRDRSRERNRDRDRDRDRERDRERDRDRDRDRERDRDRDRDRDRDRERDREGPFR 241
Query: 850 SGDHFKKHHDKKR 888
D F + ++
Sbjct: 242 RSDSFPERRAPRK 254
>sp|Q54WE5|PRP4B_DICDI Serine/threonine-protein kinase prpf4B OS=Dictyostelium
discoideum GN=prpf4B PE=3 SV=1
Length = 811
Score = 54 bits (127), Expect = 3e-006
Identities = 24/92 (26%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Frame = +1
Query: 685 SKRGSKDKDRKHKKHEDREKDIDREHKKHKHRHKDRSKDKDKDRDRKKEKNGHHDSGDHF 864
S+ G +++DR ++ DR++D DR+ + + R +DR +D+D+DRDR ++++ D
Sbjct: 103 SRDGDRERDRDRERDRDRDRDRDRDRDRDRDRERDRDRDRDRDRDRDRDRD--RDRERER 160
Query: 865 KKHHDKKRKHDGDEDLND-VHRHKKNKHRSSK 957
++ D+ + G + ++ +R ++ R S+
Sbjct: 161 ERDRDRNSQERGSRNSHERDYRDNRDYSRDSR 192
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,796,540,212
Number of Sequences: 518415
Number of Extensions: 51796540212
Number of Successful Extensions: 358348623
Number of sequences better than 0.0: 0
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