BLASTX 7.6.2
Query= UN13105 /QuerySize=1199
(1198 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 480 2e-133
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 473 3e-131
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 471 9e-131
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 336 5e-090
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 329 6e-088
gi|224069480|ref|XP_002326357.1| predicted protein [Populus tric... 317 2e-084
gi|224140195|ref|XP_002323470.1| predicted protein [Populus tric... 310 5e-082
gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucle... 309 6e-082
gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding... 305 1e-080
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 302 1e-079
gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucl... 298 2e-078
gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucle... 297 4e-078
gi|255639723|gb|ACU20155.1| unknown [Glycine max] 283 6e-074
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 220 4e-055
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 220 4e-055
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 218 1e-054
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 217 3e-054
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 480 bits (1235), Expect = 2e-133
Identities = 251/292 (85%), Positives = 263/292 (90%), Gaps = 10/292 (3%)
Frame = -3
Query: 1172 MAASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNSQSISLSVSA-----ASRFV 1008
MAASASSLALS+FNPKSLPF +SRPAS LPPSLSFKLNS S+S S++A ASRFV
Sbjct: 1 MAASASSLALSSFNPKSLPFCVSRPASVSLLPPSLSFKLNSDSVSFSIAAKWNSPASRFV 60
Query: 1007 RNVAVTDDFSVEEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNV 828
RNVA+T +F VEE+ F+DDA PQQ QSFSADLKLFVGNLPF+VDSAQLAQLFE AGNV
Sbjct: 61 RNVAITSEFEVEEDG--FADDAAPQQ-QSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF 648
EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAA QFNGYELDGR LRVNAGPPPPKRED F
Sbjct: 118 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKREDGF 177
Query: 647 SRGPRSSFGSSGSGYGGGG--GGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 474
SRGPRSSFGSSGSGYGGGG G GSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIY
Sbjct: 178 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARVIY 237
Query: 473 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
DRDSGRSKGFGFVTYNS+QEVQNAI +LNGADLDGRQIRVSEAEARPPRRQF
Sbjct: 238 DRDSGRSKGFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEAEARPPRRQF 289
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 473 bits (1216), Expect = 3e-131
Identities = 246/292 (84%), Positives = 264/292 (90%), Gaps = 10/292 (3%)
Frame = -3
Query: 1172 MAASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNSQSISLSVSA-----ASRFV 1008
MAASASSLALS+FNPKSLPF +SRPAS L PSLSFKLNS S+S S++A ASRFV
Sbjct: 1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFV 60
Query: 1007 RNVAVTDDFSVEEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNV 828
RNVA+T +F VEE+ F+D APP +EQSFSADLKLFVGNLPF+VDSAQLAQLFE AGNV
Sbjct: 61 RNVAITSEFEVEEDG--FADVAPP-KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF 648
EMVEVIYDK+TGRSRGFGFVTMSSVSEVEAA QQFNGYELDGR LRVNAGPPPPKRED F
Sbjct: 118 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 177
Query: 647 SRGPRSSFGSSGSGYGGGG--GGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 474
SRGPRSSFGSSGSGYGGGG G GSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIY
Sbjct: 178 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 237
Query: 473 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
DRDSGRSKGFGFVTY+S+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 238 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 471 bits (1212), Expect = 9e-131
Identities = 245/292 (83%), Positives = 263/292 (90%), Gaps = 10/292 (3%)
Frame = -3
Query: 1172 MAASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNSQSISLSVSA-----ASRFV 1008
MAASASSLALS+FNPKSLPF +SRPAS L PSLSFKLNS S+S S++A ASRF
Sbjct: 1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFA 60
Query: 1007 RNVAVTDDFSVEEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNV 828
RNVA+T +F VEE+ F+D APP +EQSFSADLKLFVGNLPF+VDSAQLAQLFE AGNV
Sbjct: 61 RNVAITSEFEVEEDG--FADVAPP-KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF 648
EMVEVIYDK+TGRSRGFGFVTMSSVSEVEAA QQFNGYELDGR LRVNAGPPPPKRED F
Sbjct: 118 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGF 177
Query: 647 SRGPRSSFGSSGSGYGGGG--GGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 474
SRGPRSSFGSSGSGYGGGG G GSGNRVYVGNLSWGVDDMALESLF EQGKV EARVIY
Sbjct: 178 SRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIY 237
Query: 473 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
DRDSGRSKGFGFVTY+S+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 238 DRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 336 bits (861), Expect = 5e-090
Identities = 193/296 (65%), Positives = 228/296 (77%), Gaps = 22/296 (7%)
Frame = -3
Query: 1166 ASASSLALSTFN-PKSLPFSISRPASTPF--LPPSL-SFKLNSQSISLSVSA------AS 1017
ASASSL L + + PK+L +IS+P S F LP S S KL+S SISLS S+ +S
Sbjct: 2 ASASSLVLPSLSLPKTL--AISKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSS 59
Query: 1016 RFVRNVAVTDDFSVEEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGA 837
RFVRNVAV+ D+ E+++ V SD+ P SFS DLKLFVGNLPF+VDSA LA LFE A
Sbjct: 60 RFVRNVAVSSDY--EQDEDVLSDEGEP----SFSPDLKLFVGNLPFNVDSAGLAGLFEQA 113
Query: 836 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRE 657
GNVEMVEVIYDK+TGRSRGFGFVTMS+V EVEAA QQFNGYEL+GR LRVN+GPPP +RE
Sbjct: 114 GNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRE 173
Query: 656 DSFSRGPRSSFGSSGSGYGGGGGG---GSGNRVYVGNLSWGVDDMALESLFGEQGKVAEA 486
+S RG S+F + + G GG S NR+YVGNLSWGVDD+ALE+LF EQGKV EA
Sbjct: 174 NSNFRGENSNFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEA 233
Query: 485 RVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
RVIYDR++GRS+GFGFVTYNSA+EV AI +L+G DL+GR IRV+ AEAR PRRQF
Sbjct: 234 RVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEAR-PRRQF 288
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 329 bits (843), Expect = 6e-088
Identities = 186/293 (63%), Positives = 218/293 (74%), Gaps = 39/293 (13%)
Frame = -3
Query: 1166 ASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNSQSISL--------------SV 1029
ASASSL L + NPK+L P P SLSFKL+++ IS+
Sbjct: 4 ASASSLVLPSLNPKTLSL------CNPNKPISLSFKLHAKPISIPSSLFSSFVPLQQQPY 57
Query: 1028 SAASRFVRNVAVTDDFSVEEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQL 849
S++SRFV +VA++ +F EE+ V SD E SFS DLKLFVGNLPF+VDSAQLA L
Sbjct: 58 SSSSRFVPSVAISSEFGQEED--VSSDG----DESSFSQDLKLFVGNLPFNVDSAQLAGL 111
Query: 848 FEGAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPP 669
FE AGNVEMVEVIYDKVTGRSRGFGFVTMSS+ EVEAA QQFNGYEL+GRALRVN+G PP
Sbjct: 112 FESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSG-PP 170
Query: 668 PKREDSFSRGPRSSFGSSGSGYGGGGGGG---SGNRVYVGNLSWGVDDMALESLFGEQGK 498
P+RE SFSR PR +GGGGGGG GNR+YVGNLSW VD++ALES F EQGK
Sbjct: 171 PQRESSFSRSPR---------FGGGGGGGESLEGNRLYVGNLSWSVDNLALESFFSEQGK 221
Query: 497 VAEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEA 339
V +A+V+YDR+SGRS+GFGFVTY+SA+EV+NAI +LNGA+LDGR IRVS AEA
Sbjct: 222 VVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRVSVAEA 274
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 317 bits (812), Expect = 2e-084
Identities = 179/290 (61%), Positives = 215/290 (74%), Gaps = 15/290 (5%)
Frame = -3
Query: 1169 AASASSLALSTFN-PKSLPFSISRPASTPFLPPSLSFKLNSQSISLSVS------AASRF 1011
A SASSL L + N P ++ S+P S FL S + + S+ LS +SRF
Sbjct: 3 ATSASSLVLPSLNHPNTIKSFYSKPTSLSFLSLSSTSSIKPASLFLSFQQKQQQPLSSRF 62
Query: 1010 VRNVAVTDDFSVEEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGN 831
+++VA++ +F EE+ VF D E SFS DL+LFVGNLPF+V+SAQLA LF+ AGN
Sbjct: 63 LKSVAISSEFGQEED--VFGDG----DEPSFSPDLQLFVGNLPFNVNSAQLADLFKSAGN 116
Query: 830 VEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDS 651
VEMVEV YDKVTGRSRGFGFVTMS++ EVEAA QQFNGYELDGR LRVN+G PPP+RE S
Sbjct: 117 VEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSG-PPPQRETS 175
Query: 650 FSRGP-RSSFGSSGSGYGGGGGGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 474
FSR P R + S G G GG S NRVYVGNLSW VDD ALESLF E+GKV +A+V+Y
Sbjct: 176 FSRLPQRENSFSRGPGARGGETFDSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVY 235
Query: 473 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRR 324
DRDSGRSKGFGFVTY+SA+EV++A+ +LNGA+LDGR IRVS AEA+P RR
Sbjct: 236 DRDSGRSKGFGFVTYSSAEEVEDAVDSLNGAELDGRAIRVSVAEAKPRRR 285
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 310 bits (792), Expect = 5e-082
Identities = 174/278 (62%), Positives = 206/278 (74%), Gaps = 24/278 (8%)
Frame = -3
Query: 1169 AASASSLALSTFN-PKSLPFSISRPASTPFLPPSLSFKLNSQSISLSVS-----AASRFV 1008
AASASSL L + N P ++ S+P S FL PS + L S+ LS +SRF+
Sbjct: 3 AASASSLVLPSLNHPNTIKSFYSKPNSLFFLSPSSTSSLKPVSLLLSFQHQQQPLSSRFL 62
Query: 1007 RNVAVTDDFSVEEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNV 828
+NVA++ +F EE+ F D EQSFS DLKLFVGNLPF+VDSA+LA LFE AGNV
Sbjct: 63 KNVAISSEFGQEED---FLSDG---DEQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNV 116
Query: 827 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF 648
EMVEVIYDKVTGRSRGFGFVTM+++ EVEAA +QFNGYELDGR LRVN GPPP K E SF
Sbjct: 117 EMVEVIYDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQK-ESSF 175
Query: 647 SRGPRSSFGSSGSGYGGGGGGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDR 468
SRGPR GG SGNRVYVGNLSW VD++ALE+LF E+G+V +A+V+YDR
Sbjct: 176 SRGPR-----------GGETFDSGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDR 224
Query: 467 DSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRV 354
DSGRS+GFGFVTY+SA+EV NAI +LNGA+LDGR IRV
Sbjct: 225 DSGRSRGFGFVTYSSAEEVDNAIDSLNGAELDGRAIRV 262
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP30; Flags: Precursor
Length = 279
Score = 309 bits (791), Expect = 6e-082
Identities = 179/288 (62%), Positives = 209/288 (72%), Gaps = 22/288 (7%)
Frame = -3
Query: 1166 ASASSLALSTFNPKS--LPFSISRPASTPF--LPPSLSFKLNSQSISLSVSAASRFVRNV 999
+SASSL + P++ LP S+ S F LPPS LN S S +SRFVR V
Sbjct: 3 SSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPS---SLNLSLSSPSSCFSSRFVRKV 59
Query: 998 AVTDDFSVEE-EDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNVEM 822
+ D +E+ EDG D ++E++FS DLK+FVGNL F DSA LA+LFE AGNVEM
Sbjct: 60 TLPDFDQIEDVEDG----DEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEM 115
Query: 821 VEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSR 642
VEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDGRALRVN+GPPP KRE+
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKREN---- 171
Query: 641 GPRSSFGSSGSGYGGGGGGG---SGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYD 471
SSF + S GG GGG S NRVYVGNL+WGVD ALE+LF EQGKV +A+V+YD
Sbjct: 172 ---SSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 228
Query: 470 RDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPR 327
RDSGRS+GFGFVTY+SA+EV NAI +L+G DL+GR IRVS AEARPPR
Sbjct: 229 RDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPR 276
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein
precursor [Solanum tuberosum]
Length = 289
Score = 305 bits (780), Expect = 1e-080
Identities = 171/289 (59%), Positives = 209/289 (72%), Gaps = 18/289 (6%)
Frame = -3
Query: 1166 ASASSLALSTFNPKSLPFSISRPASTPF--LPP-SLSFKLNSQSISLSVSAASRFVRNVA 996
+S+SSL + P++LP S+ S F LPP SL+ L+S S + +SRFVR V
Sbjct: 3 SSSSSLHFLSLTPQTLPKPTSQTTSISFFSLPPSSLNLSLSSSSTPRNFE-SSRFVRKVT 61
Query: 995 VTDDFSVE--------EEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEG 840
++D +E EE+G SD+ +E++ + DLK+FVGNLPF VDSA LA+LFE
Sbjct: 62 LSDFDQIEEVEAGDDDEEEGGLSDEGASYEERNANPDLKIFVGNLPFSVDSAALAELFER 121
Query: 839 AGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKR 660
AG+VEMVEVIYDK+TGRSRGFGFVTMSS VEAA QQFNGYE+DGRALRVN+GP PPKR
Sbjct: 122 AGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVNSGPAPPKR 181
Query: 659 EDSFSRGPRSSFGSSGSGYGGGGGGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARV 480
E+SF G SS+ G GGG S NRVYVGNL+W VD LE+LF EQGKV +A+V
Sbjct: 182 ENSF--GDNSSY----QGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKV 235
Query: 479 IYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARP 333
+YDRDSGRS+GFGFVTY+SA+EV +AI +L+G DL GR IRVS AEARP
Sbjct: 236 VYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRVSPAEARP 284
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 302 bits (771), Expect = 1e-079
Identities = 172/279 (61%), Positives = 202/279 (72%), Gaps = 22/279 (7%)
Frame = -3
Query: 1166 ASASSLALSTFNPKSLPF--SISRPASTPF--LPPSLSFKLNSQSISLSVSAASRFVRNV 999
+SASSL + P++LP S+ S F LPPS LN S S +SRFVR V
Sbjct: 3 SSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPS---SLNLSLSSSSSCFSSRFVRKV 59
Query: 998 AVTDDFSVEE-EDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNVEM 822
++D +E+ EDG D ++E++FS DLK+FVGNLPF DSA LA+LFE AGNVEM
Sbjct: 60 TLSDFDQIEDVEDG----DDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEM 115
Query: 821 VEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFSR 642
VEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDGRALRVN+GPPP KRE+S R
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFR 175
Query: 641 GPRSSFGSSGSGYGGGGGGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDS 462
G G GGG S NRVYVGNL+WGVD ALE+LF EQGKV +A+V+YDRDS
Sbjct: 176 G----------GSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDS 225
Query: 461 GRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEA 345
GRS+GFGFVTY+SA+EV NAI +L+G DL+GR IRVS A
Sbjct: 226 GRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 264
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B,
chloroplastic; AltName: Full=CP29B; Flags: Precursor
Length = 291
Score = 298 bits (761), Expect = 2e-078
Identities = 170/292 (58%), Positives = 205/292 (70%), Gaps = 17/292 (5%)
Frame = -3
Query: 1145 LSTFNPKSLPFSISRPASTPFLPPSLS---FKLNSQSISLSVSAASRFVRNV-AVTDDFS 978
+++ + SL F P + L P+ + F L S S++LS+S++S + ++ FS
Sbjct: 1 MASSSVSSLQFLFVTPQTPSSLKPNSTLSFFSLPSSSLNLSLSSSSTGLCSIKPFESSFS 60
Query: 977 VEEEDGVF---SDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNVEMVEVIY 807
F DD ++ FS DLKLFVGNLPF VDSA LA LFE AGNVEMVEVIY
Sbjct: 61 TRVALSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIY 120
Query: 806 DKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF---SRGP 636
DK+TGRSRGFGFVTMS+ EVEAAEQQFNGYE+DGRA+RVNAGP P KRE+S RG
Sbjct: 121 DKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGG 180
Query: 635 RSSFG---SSGSGYGGGGGG---GSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIY 474
SS+G S +GG GG S NRVYVGNLSWGVDD+AL+ LF EQG V +A+V+Y
Sbjct: 181 NSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVY 240
Query: 473 DRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
DRDSGRS+GFGFVTY+S++EV +AI +LNG DLDGR IRVS AE R PRRQF
Sbjct: 241 DRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER-PRRQF 291
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor
Length = 292
Score = 297 bits (758), Expect = 4e-078
Identities = 172/287 (59%), Positives = 200/287 (69%), Gaps = 26/287 (9%)
Frame = -3
Query: 1142 STFNPKSLPFSISRPASTPFLPPSLSFKLNSQSISLSVSA---ASRFVRNVAVTDDFSVE 972
S+ P S S P+S SL+ L+S SI S S S F VA++D +E
Sbjct: 20 SSLKPNSTLSFFSLPSS------SLNLSLSSSSIGHSASIKPFESSFSTRVALSDFDQLE 73
Query: 971 EEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNVEMVEVIYDKVTG 792
DD ++ FS DLKLFVGNLPF VDSA LA LFE AGNVE+VEVIYDK++G
Sbjct: 74 -------DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG 126
Query: 791 RSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSF---SRGPRSSFG 621
RSRGFGFVTMS+ EVEAAEQQFNGYE+DGRA+RVNAGP P KRE+S RG SS+G
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 186
Query: 620 ---SSGSGYGGGGGG---GSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSG 459
S +GG GG S NRVYVGNLSWGVDD+AL+ LF EQG V +A+V+YDRDSG
Sbjct: 187 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 246
Query: 458 RSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
RS+GFGFVTY+SA+EV +AI +LNG DLDGR IRVS AE R PRRQF
Sbjct: 247 RSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER-PRRQF 292
>gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 283 bits (722), Expect = 6e-074
Identities = 169/290 (58%), Positives = 204/290 (70%), Gaps = 24/290 (8%)
Frame = -3
Query: 1172 MAASASSLALSTFNPKSLPFSISRPASTP-FLPPSLSFKLNSQSISLS-------VSAAS 1017
M+ SA+SLAL T L +P +P SLS NS+ IS+S +S++S
Sbjct: 1 MSTSAASLALPT-----LTLRTRQPLCSPQCFSSSLSLTPNSKPISISAVFLKTTLSSSS 55
Query: 1016 RFVRNVAVTDDFSV-EEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEG 840
+ SV E+E+ F D P SFS DLKLFVGNLPF VDSA+LA+LFE
Sbjct: 56 PLSLSSRFVPHVSVLEQEEDTFGDGDGP----SFSRDLKLFVGNLPFSVDSARLAELFES 111
Query: 839 AGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKR 660
AGNVE+VEVIYDK TGRSRGFGFVTMSSV E EAA +QFNGYELDGR+LRVN+GPPP +
Sbjct: 112 AGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPARN 171
Query: 659 EDSFSRGPRSSFGSSGSGYGGGGGGGSGNRVYVGNLSWGVDDMALESLFGEQG-KVAEAR 483
E + PR GSS G GGG S NRV+VGNL+WGVDD+ALESLF EQG KV EAR
Sbjct: 172 ESA----PRFRGGSS-FGSRGGGPSDSENRVHVGNLAWGVDDVALESLFREQGKKVLEAR 226
Query: 482 VIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARP 333
VIYDR+SGRS+GFGFVT+ S EV++AI++L+G DL+GR IRVS A+++P
Sbjct: 227 VIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDLNGRAIRVSLADSKP 276
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 220 bits (560), Expect = 4e-055
Identities = 130/210 (61%), Positives = 148/210 (70%), Gaps = 10/210 (4%)
Frame = -3
Query: 1181 SSSMAASASSLALSTFNPKS---LPFSISRPASTPFLPPSLSFKLNSQSISLSVSAASRF 1011
SS A + SL L P S LP S+S + L F ++ S SRF
Sbjct: 6 SSLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVS--IFASSALKCSSPAEYPSRF 63
Query: 1010 VRNVAVTDDFSVEEEDGVFS--DDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGA 837
VRNVAV+ DF VEE+D +F+ DD+ P + SFS DLKLFVGNL F+VDSAQLAQLFE A
Sbjct: 64 VRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 836 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRE 657
GNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPPKRE
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKRE 182
Query: 656 DSFSRGPRS-SFGSS-GSGYGGGGGGGSGN 573
+SFSRGPRS +GS G GYG GGG G+
Sbjct: 183 ESFSRGPRSGGYGSERGGGYGSERGGGYGS 212
Score = 173 bits (437), Expect = 7e-041
Identities = 86/105 (81%), Positives = 91/105 (86%)
Frame = -3
Query: 632 SSFGSSGSGYGGGGGGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRS 453
S S GSG G G G GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSGRS
Sbjct: 230 SQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 289
Query: 452 KGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
KGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 290 KGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 334
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 220 bits (560), Expect = 4e-055
Identities = 130/210 (61%), Positives = 148/210 (70%), Gaps = 10/210 (4%)
Frame = -3
Query: 1181 SSSMAASASSLALSTFNPKS---LPFSISRPASTPFLPPSLSFKLNSQSISLSVSAASRF 1011
SS A + SL L P S LP S+S + L F ++ S SRF
Sbjct: 6 SSLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVS--IFASSALKCSSPAEYPSRF 63
Query: 1010 VRNVAVTDDFSVEEEDGVFS--DDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGA 837
VRNVAV+ DF VEE+D +F+ DD+ P + SFS DLKLFVGNL F+VDSAQLAQLFE A
Sbjct: 64 VRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 836 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRE 657
GNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPPKRE
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKRE 182
Query: 656 DSFSRGPRS-SFGSS-GSGYGGGGGGGSGN 573
+SFSRGPRS +GS G GYG GGG G+
Sbjct: 183 ESFSRGPRSGGYGSERGGGYGSERGGGYGS 212
Score = 173 bits (437), Expect = 7e-041
Identities = 86/105 (81%), Positives = 91/105 (86%)
Frame = -3
Query: 632 SSFGSSGSGYGGGGGGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRS 453
S S GSG G G G GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSGRS
Sbjct: 238 SQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 297
Query: 452 KGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
KGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 298 KGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 218 bits (555), Expect = 1e-054
Identities = 128/206 (62%), Positives = 146/206 (70%), Gaps = 10/206 (4%)
Frame = -3
Query: 1169 AASASSLALSTFNPKS---LPFSISRPASTPFLPPSLSFKLNSQSISLSVSAASRFVRNV 999
A + SL L P S LP S+S + L F ++ S SRFVRNV
Sbjct: 2 AFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVS--IFASSALKCSSPAEYPSRFVRNV 59
Query: 998 AVTDDFSVEEEDGVFS--DDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGAGNVE 825
AV+ DF VEE+D +F+ DD+ P + SFS DLKLFVGNL F+VDSAQLAQLFE AGNVE
Sbjct: 60 AVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVE 118
Query: 824 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKREDSFS 645
MVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPPKRE+SFS
Sbjct: 119 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 178
Query: 644 RGPRS-SFGSS-GSGYGGGGGGGSGN 573
RGPRS +GS G GYG GGG G+
Sbjct: 179 RGPRSGGYGSERGGGYGSERGGGYGS 204
Score = 173 bits (437), Expect = 7e-041
Identities = 86/105 (81%), Positives = 91/105 (86%)
Frame = -3
Query: 632 SSFGSSGSGYGGGGGGGSGNRVYVGNLSWGVDDMALESLFGEQGKVAEARVIYDRDSGRS 453
S S GSG G G G GSGNR+YVGNLSWGVDDMALE+LF EQGKV EARVIYDRDSGRS
Sbjct: 222 SQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 281
Query: 452 KGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 318
KGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARPPR QF
Sbjct: 282 KGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 326
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 217 bits (552), Expect = 3e-054
Identities = 128/210 (60%), Positives = 147/210 (70%), Gaps = 10/210 (4%)
Frame = -3
Query: 1181 SSSMAASASSLALSTFNPKS---LPFSISRPASTPFLPPSLSFKLNSQSISLSVSAASRF 1011
SS A + SL L P S LP S+S + + F ++ S RF
Sbjct: 6 SSLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHIVS--LFASSAVKCSSPAEYPLRF 63
Query: 1010 VRNVAVTDDFSVEEEDGVFS--DDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFEGA 837
VRNVAV+ DF VEE+D +F+ DD+ P + SFS DLKLFVGNL F+VDSAQLAQLFE A
Sbjct: 64 VRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 836 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGRALRVNAGPPPPKRE 657
GNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +GR LRVNAGPPPPKRE
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKRE 182
Query: 656 DSFSRGPRS-SFGSS-GSGYGGGGGGGSGN 573
+SFSRGPRS +GS G GYG GGG G+
Sbjct: 183 ESFSRGPRSGGYGSERGGGYGSERGGGYGS 212
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,572,628,988,984
Number of Sequences: 15229318
Number of Extensions: 1572628988984
Number of Successful Extensions: 405575147
Number of sequences better than 0.0: 0
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