BLASTX 7.6.2
Query= UN13380 /QuerySize=1405
(1404 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III sub... 154 1e-036
sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III sub... 153 4e-036
sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III sub... 151 1e-035
sp|P52432|RPAC1_MOUSE DNA-directed RNA polymerases I and III sub... 147 3e-034
sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III sub... 140 3e-032
sp|P07703|RPAC1_YEAST DNA-directed RNA polymerases I and III sub... 130 3e-029
sp|O26144|RPOD_METTH DNA-directed RNA polymerase subunit D OS=Me... 70 3e-011
sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3... 69 1e-010
sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3... 68 2e-010
sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3... 67 2e-010
sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3... 65 1e-009
sp|O59303|RPOD_PYRHO DNA-directed RNA polymerase subunit D OS=Py... 64 3e-009
sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB... 63 4e-009
sp|P0CG28|RPOD_METAC DNA-directed RNA polymerase subunit D OS=Me... 63 4e-009
>sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III subunit RPAC1
OS=Schizosaccharomyces pombe GN=rpc40 PE=2 SV=1
Length = 348
Score = 154 bits (389), Expect = 1e-036
Identities = 75/157 (47%), Positives = 108/157 (68%)
Frame = -2
Query: 641 FADNPITPSHLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGE 462
FADNPI + DI+++KL PGQEI+LEAHAI GIG+ HAK+SPV TA YR+LP + +L
Sbjct: 186 FADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSP 245
Query: 461 VEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVK 282
+E E A + K P V ++E+ +G+K+A VA R T+ +EC+R + D V L V+
Sbjct: 246 IEGEDAVKFQKCFPKGVIELEEGPDGKKQARVADVRKDTVSRECLRHPEFADKVQLGRVR 305
Query: 281 DHFIFKIESTGSLPPDVLFTEAVKILEDKCERVIADL 171
DH++F +ESTG + PDVLF +++ +L+ KC V + L
Sbjct: 306 DHYLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSL 342
Score = 106 bits (263), Expect = 5e-022
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 7/134 (5%)
Frame = -2
Query: 1181 DASVDTTDVIYSGSYVSSGVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAF 1002
D D V + G Y DN L F ++ KV + S + M F++ GIDA+ ANAF
Sbjct: 16 DRVTDVGSVDFPGYYFDE--DNIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANAF 73
Query: 1001 RRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRLFEYLT-----ETDQP 837
RRILIAE+P++A E V I NTS+I DEVL+HRIGL+PI+ADP +F++ +
Sbjct: 74 RRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEATH 133
Query: 836 NEKNTIVFKLHVKC 795
+ +T+VF L+ KC
Sbjct: 134 TDYDTVVFSLNKKC 147
>sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III subunit RPAC1
OS=Bos taurus GN=POLR1C PE=2 SV=1
Length = 346
Score = 153 bits (385), Expect = 4e-036
Identities = 79/157 (50%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Frame = -2
Query: 641 FADNPITPSHLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGE 462
F + I P H DILI++L PGQEI+L H +KGIGK HAK+SPV TA YR+LP++ LL
Sbjct: 185 FPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEP 244
Query: 461 VEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVK 282
VE E AE L + V +++++ G+K A VA PR T +E R+ L +V L V+
Sbjct: 245 VEGEAAEELSRCFSPGVIEVQEI-QGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVR 303
Query: 281 DHFIFKIESTGSLPPDVLFTEAVKILEDKCERVIADL 171
DHFIF +ESTG LPPDVL +EA+K+L KC+R + +L
Sbjct: 304 DHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
Score = 137 bits (343), Expect = 3e-031
Identities = 71/130 (54%), Positives = 96/130 (73%), Gaps = 5/130 (3%)
Frame = -2
Query: 1175 SVDTTDVIYSGSYVSSGVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRR 996
+V TTD + G+Y SG D+ F ++F+VDV+ E +EFDM+GIDAA ANAFRR
Sbjct: 23 NVHTTD--FPGNY--SGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRR 78
Query: 995 ILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQ-PNEKNTI 819
IL+AEVP+MA+EKVL+ NTS++ DE+LAHR+GLIPI ADPRLFEY + D+ E +T+
Sbjct: 79 ILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEGGTEIDTL 138
Query: 818 VFKLHVKCPK 789
F+L V+C +
Sbjct: 139 QFRLQVRCTR 148
>sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III subunit RPAC1
OS=Homo sapiens GN=POLR1C PE=1 SV=1
Length = 346
Score = 151 bits (380), Expect = 1e-035
Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Frame = -2
Query: 641 FADNPITPSHLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGE 462
F + I P H DILI++L PGQEI+L H +KGIGK HAK+SPV TA YR+LP++ LL
Sbjct: 185 FPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEP 244
Query: 461 VEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVK 282
VE E AE L + V +++++ G+K A VA PR T +E R+ L +V L V+
Sbjct: 245 VEGEAAEELSRCFSPGVIEVQEV-QGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVR 303
Query: 281 DHFIFKIESTGSLPPDVLFTEAVKILEDKCERVIADL 171
DH+IF +ESTG LPPDVL +EA+K+L KC R + +L
Sbjct: 304 DHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
Score = 137 bits (344), Expect = 2e-031
Identities = 71/130 (54%), Positives = 96/130 (73%), Gaps = 5/130 (3%)
Frame = -2
Query: 1175 SVDTTDVIYSGSYVSSGVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRR 996
+V TTD + G+Y SG D+ F ++F+VDV+ E +EFDM+GIDAA ANAFRR
Sbjct: 23 NVHTTD--FPGNY--SGYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRR 78
Query: 995 ILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQP-NEKNTI 819
IL+AEVP+MA+EKVL+ NTS++ DE+LAHR+GLIPI ADPRLFEY + D+ E +T+
Sbjct: 79 ILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQGDEEGTEIDTL 138
Query: 818 VFKLHVKCPK 789
F+L V+C +
Sbjct: 139 QFRLQVRCTR 148
>sp|P52432|RPAC1_MOUSE DNA-directed RNA polymerases I and III subunit RPAC1
OS=Mus musculus GN=Polr1e PE=1 SV=2
Length = 346
Score = 147 bits (369), Expect = 3e-034
Identities = 79/157 (50%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Frame = -2
Query: 641 FADNPITPSHLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGE 462
F + I P H DILI++L PGQEI+L H +KGIGK HAK+SPV TA YR+LP + LL
Sbjct: 185 FPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEP 244
Query: 461 VEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVK 282
VE E AE L + V ++E++ G+K A VA R T +E R L V L V+
Sbjct: 245 VEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANARLDTFSREIFRHEKLKKAVRLARVR 303
Query: 281 DHFIFKIESTGSLPPDVLFTEAVKILEDKCERVIADL 171
DH+IF +ESTG LPPDVL +EA+KIL KC R + +L
Sbjct: 304 DHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
Score = 130 bits (326), Expect = 3e-029
Identities = 67/130 (51%), Positives = 94/130 (72%), Gaps = 5/130 (3%)
Frame = -2
Query: 1175 SVDTTDVIYSGSYVSSGVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRR 996
+V TTD + G+Y +G D+ F ++F+V V+ E +EFDM+GIDAA ANAFRR
Sbjct: 23 NVHTTD--FPGNY--AGYDDAWDQNRFEKNFRVGVVQMDEDTLEFDMVGIDAAIANAFRR 78
Query: 995 ILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTE-TDQPNEKNTI 819
IL+A VP+MA+EKVL+ NTS++ DE+LAHR+GLIPI ADPRLFEY + ++ E +T+
Sbjct: 79 ILLARVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNQGEEEGTEIDTL 138
Query: 818 VFKLHVKCPK 789
F+L V+C +
Sbjct: 139 QFRLQVRCTR 148
>sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III subunit rpac1
OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1
Length = 345
Score = 140 bits (351), Expect = 3e-032
Identities = 73/176 (41%), Positives = 104/176 (59%), Gaps = 5/176 (2%)
Frame = -2
Query: 710 DSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKLSPGQEIELEAHAIKGIGKT 531
+ T+ SK + ++ P D P P DI I KL PGQ I+++ + K IG+
Sbjct: 166 NETALSKHLIWVPTQDQEEMFPNEEDRP-RPMEDDIPIMKLRPGQVIDIQCYCEKNIGRE 224
Query: 530 HAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQPRN 351
H KWSPV TA YR+ P + + ++ +KA +L++ CP VFDIED G + A+P +
Sbjct: 225 HIKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIEDSG----QVVAARPLD 280
Query: 350 CTLCKECIRDHDLVDLVDLRSVKDHFIFKIESTGSLPPDVLFTEAVKILEDKCERV 183
CT+C+ECIRD + V + V+DHFIF IESTG+L +F EA+KI +KC V
Sbjct: 281 CTMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIEKCNIV 336
Score = 136 bits (341), Expect = 5e-031
Identities = 69/167 (41%), Positives = 105/167 (62%), Gaps = 6/167 (3%)
Frame = -2
Query: 1226 PHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSSGVDNTVKLGNFYEDFKVDVISCTETDM 1047
P+L+ K+ + ++ + YSG+Y S G DN+ L F E+FK++++S + ++
Sbjct: 13 PNLENKRTKVTLTNSGVE-NARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANEL 71
Query: 1046 EFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRL 867
F+MIGIDA ANA RRI+I+E+P+MAIEKV I NTS++ DEVLAHR+G+IPI DPR
Sbjct: 72 VFEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHRLGMIPIKVDPRK 131
Query: 866 FEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV-----LTNELQWLP 741
F + + ++T++F+L VKC K + L+ L W+P
Sbjct: 132 FNFKLPNKEYTAEDTLIFQLKVKCEKDSVTGKIINETALSKHLIWVP 178
>sp|P07703|RPAC1_YEAST DNA-directed RNA polymerases I and III subunit RPAC1
OS=Saccharomyces cerevisiae GN=RPC40 PE=1 SV=1
Length = 335
Score = 130 bits (326), Expect = 3e-029
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 3/151 (1%)
Frame = -2
Query: 641 FADNPITPSHLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGE 462
FAD P+ P+ DIL++KL PGQEI L+AH I GIG HAK+SPV TA YR+LP++ +L
Sbjct: 179 FADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQP 238
Query: 461 VEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVK 282
++ E A R K P V I++ G A V R T+ +E +R + D V L V+
Sbjct: 239 IKGESARRFQKCFPPGVIGIDE---GSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVR 295
Query: 281 DHFIFKIESTGSLPPDVLFTEAVKILEDKCE 189
+HFIF +ES G++ P+ +F ++V+IL++K E
Sbjct: 296 NHFIFNVESAGAMTPEEIFFKSVRILKNKAE 326
Score = 103 bits (256), Expect = 4e-021
Identities = 56/131 (42%), Positives = 82/131 (62%), Gaps = 6/131 (4%)
Frame = -2
Query: 1169 DTTDVIYSGSYVSSGVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRIL 990
+TT + G S +N + F +DF+V++ S + FD+I ID + ANAFRRI+
Sbjct: 14 NTTSTDFPG--FSKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIM 71
Query: 989 IAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRLFEY----LTETDQPNEKNT 822
I+EVPS+A E V NTS+I DEVLAHRIGL+P+ DP + + L + ++ ++NT
Sbjct: 72 ISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDEKFTDENT 131
Query: 821 IVFKLHVKCPK 789
IV L+VKC +
Sbjct: 132 IVLSLNVKCTR 142
>sp|O26144|RPOD_METTH DNA-directed RNA polymerase subunit D OS=Methanobacterium
thermoautotrophicum GN=rpoD PE=3 SV=1
Length = 264
Score = 70 bits (171), Expect = 3e-011
Identities = 35/69 (50%), Positives = 47/69 (68%)
Frame = -2
Query: 1061 TETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIA 882
T+T+M F + G+ F NA RRI + EVP +AIE V + N + + DEVLAHR+GL+P+A
Sbjct: 9 TDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRLGLVPLA 68
Query: 881 ADPRLFEYL 855
ADP E L
Sbjct: 69 ADPEFAESL 77
>sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3 OS=Mus
musculus GN=Polr2c PE=2 SV=1
Length = 275
Score = 69 bits (166), Expect = 1e-010
Identities = 42/113 (37%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Frame = -2
Query: 1079 VDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRI 900
V + TE +++F + D A AN+ RR+ IAEVP +AI+ V I N+S++ DE +AHR+
Sbjct: 9 VRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDEFIAHRL 68
Query: 899 GLIPIAADPRLFEYLTETDQPNE----KNTIVFKLHVKCPKGQSRLHVLTNEL 753
GLIP+ +D + + D E + ++ F L V+C + Q+R HV + +L
Sbjct: 69 GLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL 120
>sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus
GN=POLR2C PE=2 SV=1
Length = 275
Score = 68 bits (164), Expect = 2e-010
Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Frame = -2
Query: 1079 VDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRI 900
V + T+ +++F + D A AN+ RR+ IAEVP +AI+ V I N+S++ DE +AHR+
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 899 GLIPIAADPRLFEYLTETDQPNE----KNTIVFKLHVKCPKGQSRLHVLTNEL 753
GLIP+ +D + + D E + ++ F L V+C + Q+R HV + +L
Sbjct: 69 GLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL 120
>sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3 OS=Homo
sapiens GN=POLR2C PE=1 SV=2
Length = 275
Score = 67 bits (163), Expect = 2e-010
Identities = 41/113 (36%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Frame = -2
Query: 1079 VDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRI 900
V + T+ +++F + D A AN+ RR+ IAEVP +AI+ V I N+S++ DE +AHR+
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 899 GLIPIAADPRLFEYLTETDQPNE----KNTIVFKLHVKCPKGQSRLHVLTNEL 753
GLIP+ +D + + D E + ++ F L V+C + Q+R HV + +L
Sbjct: 69 GLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTR-HVTSRDL 120
>sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3
OS=Saccharomyces cerevisiae GN=RPB3 PE=1 SV=2
Length = 318
Score = 65 bits (157), Expect = 1e-009
Identities = 29/76 (38%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = -2
Query: 1082 KVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHR 903
+V + ++ +++F + +D A AN+ RR++IAE+P++AI+ V + NT+++ DE +AHR
Sbjct: 7 QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66
Query: 902 IGLIPI-AADPRLFEY 858
+GLIP+ + D EY
Sbjct: 67 LGLIPLQSMDIEQLEY 82
>sp|O59303|RPOD_PYRHO DNA-directed RNA polymerase subunit D OS=Pyrococcus
horikoshii GN=rpoD PE=3 SV=2
Length = 259
Score = 64 bits (153), Expect = 3e-009
Identities = 28/74 (37%), Positives = 46/74 (62%)
Frame = -2
Query: 1082 KVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHR 903
K+ ++ TE + F + G+ AFANA RR ++ EVP+ A+++V N S + DE++AHR
Sbjct: 3 KIKILKKTEDSITFILEGVSVAFANALRRTILGEVPTFAVDEVEFYENDSALFDEIIAHR 62
Query: 902 IGLIPIAADPRLFE 861
+ +IP+ FE
Sbjct: 63 LAMIPLKTPTDRFE 76
>sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A
OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1
Length = 319
Score = 63 bits (152), Expect = 4e-009
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Frame = -2
Query: 1103 GNFYEDF-KVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLI 927
G Y+ F K+ + + +F++ D + ANA RR++I+EVP++AI+ V I N+S++
Sbjct: 3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62
Query: 926 VDEVLAHRIGLIPIAADPRLFEYLT------ETDQPNEKNTIVFKLHVKCPKGQSRLHVL 765
DE +AHR+GLIP+ ++ + + + D E ++ F+L KC Q+ L V
Sbjct: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQT-LDVT 121
Query: 764 TNEL 753
+ +L
Sbjct: 122 SRDL 125
>sp|P0CG28|RPOD_METAC DNA-directed RNA polymerase subunit D OS=Methanosarcina
acetivorans GN=rpoD PE=3 SV=1
Length = 266
Score = 63 bits (152), Expect = 4e-009
Identities = 31/80 (38%), Positives = 50/80 (62%)
Frame = -2
Query: 1082 KVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHR 903
+VD++ ++ +F + + AFAN RR ++A+VP++AIE V + NTS++ DE LA R
Sbjct: 4 EVDILELSDRSAKFVLSNVSTAFANGIRRAMVADVPTLAIEYVNLYDNTSVLYDEQLALR 63
Query: 902 IGLIPIAADPRLFEYLTETD 843
+ LIP+A D + E D
Sbjct: 64 LSLIPLATDIETYLPQAECD 83
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,759,707,213
Number of Sequences: 518415
Number of Extensions: 54759707213
Number of Successful Extensions: 366332288
Number of sequences better than 0.0: 0
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