BLASTX 7.6.2
Query= UN13380 /QuerySize=1405
(1404 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 597 7e-171
TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 597 7e-171
TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA b... 555 2e-158
TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 437 1e-122
TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; D... 136 4e-032
TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, N... 84 2e-016
TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; D... 65 1e-010
>TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 597 bits (1538), Expect = 7e-171
Identities = 301/375 (80%), Positives = 330/375 (88%), Gaps = 4/375 (1%)
Frame = -2
Query: 1304 MVTEEDKIFAKNFYIDDLPDVPAGLPPHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSS- 1128
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q R VVSK +A T IYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTR-VVSKNNAPAHTASAIYSGTYVSST 59
Query: 1127 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 948
D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 947 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV 768
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E DQ NEKNTIVFKLHVKCPK + RL V
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179
Query: 767 LTNELQWLPNGSEFIKESGDSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKL 588
LT++L+WLPNGSE ++ES TSKPKTYTSFSCSQDSLPEFA+NPITP LDILI+KL
Sbjct: 180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237
Query: 587 SPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVF 408
+PGQEIELEAHA+KGIGKTHAKWSPVGTAWYRM PEVVL GEVEDE AERLV CP NVF
Sbjct: 238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVF 297
Query: 407 DIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVKDHFIFKIESTGSLPPDVL 228
DIEDMG G+KRATVAQPR CTLCKEC+RD DLVD VDL SVK+HFIF IESTGSLPP+VL
Sbjct: 298 DIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVL 357
Query: 227 FTEAVKILEDKCERV 183
FTEAVKILE KCE +
Sbjct: 358 FTEAVKILEAKCEAI 372
>TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 597 bits (1538), Expect = 7e-171
Identities = 301/375 (80%), Positives = 330/375 (88%), Gaps = 4/375 (1%)
Frame = -2
Query: 1304 MVTEEDKIFAKNFYIDDLPDVPAGLPPHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSS- 1128
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q R VVSK +A T IYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTR-VVSKNNAPAHTASAIYSGTYVSST 59
Query: 1127 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 948
D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 947 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV 768
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E DQ NEKNTIVFKLHVKCPK + RL V
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179
Query: 767 LTNELQWLPNGSEFIKESGDSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKL 588
LT++L+WLPNGSE ++ES TSKPKTYTSFSCSQDSLPEFA+NPITP LDILI+KL
Sbjct: 180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237
Query: 587 SPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVF 408
+PGQEIELEAHA+KGIGKTHAKWSPVGTAWYRM PEVVL GEVEDE AERLV CP NVF
Sbjct: 238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVF 297
Query: 407 DIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVKDHFIFKIESTGSLPPDVL 228
DIEDMG G+KRATVAQPR CTLCKEC+RD DLVD VDL SVK+HFIF IESTGSLPP+VL
Sbjct: 298 DIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVL 357
Query: 227 FTEAVKILEDKCERV 183
FTEAVKILE KCE +
Sbjct: 358 FTEAVKILEAKCEAI 372
>TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22331225-22333370 FORWARD
Length = 386
Score = 555 bits (1430), Expect = 2e-158
Identities = 283/382 (74%), Positives = 322/382 (84%), Gaps = 4/382 (1%)
Frame = -2
Query: 1307 RMVTEEDKIFAKNFYIDDLPDVPAGLPPHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSS 1128
R+VT+E+K AKNF I DLPDVP GLPPHL+L++ R VV KKD+++ T + +SG+Y S
Sbjct: 8 RIVTDEEKREAKNFNIFDLPDVPTGLPPHLELQRTR-VVCKKDSNIHPTAITFSGAYSSM 66
Query: 1127 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 948
GVDN+V+L NF EDFKVDVIS TETDM FDMIG+ A ANAFRRIL+AE+PSMAIEKV +
Sbjct: 67 GVDNSVRLENFSEDFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYV 126
Query: 947 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV 768
A NTS+I DEVLAHR+GLIPIAADPRLFEYL+E DQPNEKNTIVFKLHVKC KG R V
Sbjct: 127 ANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKV 186
Query: 767 LTNELQWLPNGSEFIKESGDSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKL 588
LT+EL+WLPNGSE IKESG ST+T PKTYTSF+ SQDS PEFA+NPI P+ DILI+KL
Sbjct: 187 LTSELKWLPNGSELIKESGGSTTT--PKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKL 244
Query: 587 SPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVF 408
PGQEIELEAHA+KGIGKTHAKWSPV TAWYRMLPEVVLL E E + AE LVK CP VF
Sbjct: 245 GPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVF 304
Query: 407 DIEDMGNGRKRATVAQPRNCTLCKECIRDH-DLVDLVDLRSVKDHFIFKIESTGSLPPDV 231
DIEDMG GRKRATVA+PR+C+LC+ECIRD + D VDLR VK+HFIF IESTGS PP+V
Sbjct: 305 DIEDMGQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEV 364
Query: 230 LFTEAVKILEDKCERVIADLS* 165
LF EAVKILEDKCERVI++LS*
Sbjct: 365 LFNEAVKILEDKCERVISELS* 386
>TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398588-22400155 REVERSE
Length = 303
Score = 437 bits (1122), Expect = 1e-122
Identities = 221/277 (79%), Positives = 245/277 (88%), Gaps = 4/277 (1%)
Frame = -2
Query: 1304 MVTEEDKIFAKNFYIDDLPDVPAGLPPHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSS- 1128
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q R VVSK +A T IYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTR-VVSKNNAPAHTASAIYSGTYVSST 59
Query: 1127 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 948
D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 947 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV 768
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E DQ NEKNTIVFKLHVKCPK + RL V
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179
Query: 767 LTNELQWLPNGSEFIKESGDSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKL 588
LT++L+WLPNGSE ++ES TSKPKTYTSFSCSQDSLPEFA+NPITP LDILI+KL
Sbjct: 180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237
Query: 587 SPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEV 477
+PGQEIELEAHA+KGIGKTHAKWSPVGTAWYRM PEV
Sbjct: 238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEV 274
>TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr2:6713022-6714386 FORWARD
Length = 320
Score = 136 bits (341), Expect = 4e-032
Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 40/301 (13%)
Frame = -2
Query: 1046 EFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRL 867
+F++ D + ANA RR++I+EVP+MAI V I N+S++ DE +A R+ LIP+ ++ +
Sbjct: 23 KFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAM 82
Query: 866 FEYLTET------DQPNEKNTIVFKLHVKCPKGQSRLHVLTNELQWLPNGSEFIKESGDS 705
+ D+ E ++ F L KC Q+ L V + +L S D
Sbjct: 83 SMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQT-LDVTSRDLY-----------SADP 130
Query: 704 TSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKLSPGQEIELEAHAIKGIGKTHA 525
T T P +TS S + DS H I+I+KL GQE++L+A A KGIGK HA
Sbjct: 131 TVT--PVDFTSNSSTSDS----------SEHKGIIIAKLRRGQELKLKALARKGIGKDHA 178
Query: 524 KWSPVGTAWYRMLPEVV----LLGEVEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQP 357
KWSP T Y P+++ ++ + DE+ L+++ P VF I+ + + V P
Sbjct: 179 KWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTG---QVVVVDP 235
Query: 356 RNCTLCKECIRDHDLV---DLVDLRSVKDHFIFKIESTGSLPPDVLFTEAVKILEDKCER 186
T +E I+ + + L+++ D F+F +ESTG+L L A+ IL+ K +
Sbjct: 236 EAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDA 295
Query: 185 V 183
+
Sbjct: 296 I 296
>TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A |
NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization
| chr2:6733661-6735482 FORWARD
Length = 320
Score = 84 bits (206), Expect = 2e-016
Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Frame = -2
Query: 614 HLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVV----LLGEVEDEK 447
H I+I KL GQE++L A A KGIGK HAKWSP T + P+++ ++ + DE+
Sbjct: 149 HKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEE 208
Query: 446 AERLVKTCPMNVFDIEDMGNGRKRATVAQPRNCTLCKECIRDHDLV---DLVDLRSVKDH 276
L+++ P VF ++ + ++ V P T +E I+ + + L+++ D
Sbjct: 209 KIDLIESSPTKVFGMDPV---TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDS 265
Query: 275 FIFKIESTGSLPPDVLFTEAVKILEDKCERV 183
FIF +ESTG++ L A+ +L+ K + V
Sbjct: 266 FIFTVESTGAVKASQLVLNAIDLLKQKLDAV 296
Score = 63 bits (152), Expect = 4e-010
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Frame = -2
Query: 1103 GNFYEDF-KVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLI 927
G Y+ F K+ + + +F++ D + ANA RR++I+EVP++AI+ V I N+S++
Sbjct: 3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62
Query: 926 VDEVLAHRIGLIPIAADPRLFEYLT------ETDQPNEKNTIVFKLHVKCPKGQSRLHVL 765
DE +AHR+GLIP+ ++ + + + D E ++ F+L KC Q+ L V
Sbjct: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQT-LDVT 121
Query: 764 TNEL 753
+ +L
Sbjct: 122 SRDL 125
>TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr2:6713022-6713918 FORWARD
Length = 236
Score = 65 bits (156), Expect = 1e-010
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Frame = -2
Query: 644 EFADNPIT---PSHLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVV 474
+F N T H I+I+KL GQE++L+A A KGIGK HAKWSP T Y P+++
Sbjct: 136 DFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDII 195
Query: 473 ----LLGEVEDEKAERLVKTCPMNVFDIE 399
++ + DE+ L+++ P VF I+
Sbjct: 196 INEEMMNTLTDEEKIDLIESSPTKVFGID 224
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,031,614,975
Number of Sequences: 33410
Number of Extensions: 7031614975
Number of Successful Extensions: 243238164
Number of sequences better than 0.0: 0
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