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TAIR blast output of UN13380


BLASTX 7.6.2

Query= UN13380 /QuerySize=1405
        (1404 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42...    597   7e-171
TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42...    597   7e-171
TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA b...    555   2e-158
TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42...    437   1e-122
TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; D...    136   4e-032
TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, N...     84   2e-016
TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; D...     65   1e-010

>TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
        DNA-directed RNA polymerase/ protein dimerization |
        chr1:22398078-22400155 REVERSE

          Length = 376

 Score =  597 bits (1538), Expect = 7e-171
 Identities = 301/375 (80%), Positives = 330/375 (88%), Gaps = 4/375 (1%)
 Frame = -2

Query: 1304 MVTEEDKIFAKNFYIDDLPDVPAGLPPHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSS- 1128
            MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q R VVSK +A   T   IYSG+YVSS 
Sbjct:    1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTR-VVSKNNAPAHTASAIYSGTYVSST 59

Query: 1127 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 948
              D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct:   60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119

Query:  947 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV 768
            AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E DQ NEKNTIVFKLHVKCPK + RL V
Sbjct:  120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179

Query:  767 LTNELQWLPNGSEFIKESGDSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKL 588
            LT++L+WLPNGSE ++ES     TSKPKTYTSFSCSQDSLPEFA+NPITP  LDILI+KL
Sbjct:  180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237

Query:  587 SPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVF 408
            +PGQEIELEAHA+KGIGKTHAKWSPVGTAWYRM PEVVL GEVEDE AERLV  CP NVF
Sbjct:  238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVF 297

Query:  407 DIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVKDHFIFKIESTGSLPPDVL 228
            DIEDMG G+KRATVAQPR CTLCKEC+RD DLVD VDL SVK+HFIF IESTGSLPP+VL
Sbjct:  298 DIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVL 357

Query:  227 FTEAVKILEDKCERV 183
            FTEAVKILE KCE +
Sbjct:  358 FTEAVKILEAKCEAI 372

>TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
        DNA-directed RNA polymerase/ protein dimerization |
        chr1:22398078-22400155 REVERSE

          Length = 376

 Score =  597 bits (1538), Expect = 7e-171
 Identities = 301/375 (80%), Positives = 330/375 (88%), Gaps = 4/375 (1%)
 Frame = -2

Query: 1304 MVTEEDKIFAKNFYIDDLPDVPAGLPPHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSS- 1128
            MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q R VVSK +A   T   IYSG+YVSS 
Sbjct:    1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTR-VVSKNNAPAHTASAIYSGTYVSST 59

Query: 1127 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 948
              D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct:   60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119

Query:  947 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV 768
            AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E DQ NEKNTIVFKLHVKCPK + RL V
Sbjct:  120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179

Query:  767 LTNELQWLPNGSEFIKESGDSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKL 588
            LT++L+WLPNGSE ++ES     TSKPKTYTSFSCSQDSLPEFA+NPITP  LDILI+KL
Sbjct:  180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237

Query:  587 SPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVF 408
            +PGQEIELEAHA+KGIGKTHAKWSPVGTAWYRM PEVVL GEVEDE AERLV  CP NVF
Sbjct:  238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVF 297

Query:  407 DIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVKDHFIFKIESTGSLPPDVL 228
            DIEDMG G+KRATVAQPR CTLCKEC+RD DLVD VDL SVK+HFIF IESTGSLPP+VL
Sbjct:  298 DIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVL 357

Query:  227 FTEAVKILEDKCERV 183
            FTEAVKILE KCE +
Sbjct:  358 FTEAVKILEAKCEAI 372

>TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA binding /
        DNA-directed RNA polymerase/ protein dimerization |
        chr1:22331225-22333370 FORWARD

          Length = 386

 Score =  555 bits (1430), Expect = 2e-158
 Identities = 283/382 (74%), Positives = 322/382 (84%), Gaps = 4/382 (1%)
 Frame = -2

Query: 1307 RMVTEEDKIFAKNFYIDDLPDVPAGLPPHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSS 1128
            R+VT+E+K  AKNF I DLPDVP GLPPHL+L++ R VV KKD+++  T + +SG+Y S 
Sbjct:    8 RIVTDEEKREAKNFNIFDLPDVPTGLPPHLELQRTR-VVCKKDSNIHPTAITFSGAYSSM 66

Query: 1127 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 948
            GVDN+V+L NF EDFKVDVIS TETDM FDMIG+ A  ANAFRRIL+AE+PSMAIEKV +
Sbjct:   67 GVDNSVRLENFSEDFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYV 126

Query:  947 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV 768
            A NTS+I DEVLAHR+GLIPIAADPRLFEYL+E DQPNEKNTIVFKLHVKC KG  R  V
Sbjct:  127 ANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKV 186

Query:  767 LTNELQWLPNGSEFIKESGDSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKL 588
            LT+EL+WLPNGSE IKESG ST+T  PKTYTSF+ SQDS PEFA+NPI P+  DILI+KL
Sbjct:  187 LTSELKWLPNGSELIKESGGSTTT--PKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKL 244

Query:  587 SPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVF 408
             PGQEIELEAHA+KGIGKTHAKWSPV TAWYRMLPEVVLL E E + AE LVK CP  VF
Sbjct:  245 GPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVF 304

Query:  407 DIEDMGNGRKRATVAQPRNCTLCKECIRDH-DLVDLVDLRSVKDHFIFKIESTGSLPPDV 231
            DIEDMG GRKRATVA+PR+C+LC+ECIRD  +  D VDLR VK+HFIF IESTGS PP+V
Sbjct:  305 DIEDMGQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEV 364

Query:  230 LFTEAVKILEDKCERVIADLS* 165
            LF EAVKILEDKCERVI++LS*
Sbjct:  365 LFNEAVKILEDKCERVISELS* 386

>TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
        DNA-directed RNA polymerase/ protein dimerization |
        chr1:22398588-22400155 REVERSE

          Length = 303

 Score =  437 bits (1122), Expect = 1e-122
 Identities = 221/277 (79%), Positives = 245/277 (88%), Gaps = 4/277 (1%)
 Frame = -2

Query: 1304 MVTEEDKIFAKNFYIDDLPDVPAGLPPHLKLKQNRAVVSKKDASVDTTDVIYSGSYVSS- 1128
            MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q R VVSK +A   T   IYSG+YVSS 
Sbjct:    1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTR-VVSKNNAPAHTASAIYSGTYVSST 59

Query: 1127 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 948
              D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct:   60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119

Query:  947 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTETDQPNEKNTIVFKLHVKCPKGQSRLHV 768
            AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E DQ NEKNTIVFKLHVKCPK + RL V
Sbjct:  120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179

Query:  767 LTNELQWLPNGSEFIKESGDSTSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKL 588
            LT++L+WLPNGSE ++ES     TSKPKTYTSFSCSQDSLPEFA+NPITP  LDILI+KL
Sbjct:  180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237

Query:  587 SPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEV 477
            +PGQEIELEAHA+KGIGKTHAKWSPVGTAWYRM PEV
Sbjct:  238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEV 274

>TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
        DNA-directed RNA polymerase/ protein dimerization |
        chr2:6713022-6714386 FORWARD

          Length = 320

 Score =  136 bits (341), Expect = 4e-032
 Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 40/301 (13%)
 Frame = -2

Query: 1046 EFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRL 867
            +F++   D + ANA RR++I+EVP+MAI  V I  N+S++ DE +A R+ LIP+ ++  +
Sbjct:   23 KFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAM 82

Query:  866 FEYLTET------DQPNEKNTIVFKLHVKCPKGQSRLHVLTNELQWLPNGSEFIKESGDS 705
                 +       D+  E  ++ F L  KC   Q+ L V + +L            S D 
Sbjct:   83 SMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQT-LDVTSRDLY-----------SADP 130

Query:  704 TSTSKPKTYTSFSCSQDSLPEFADNPITPSHLDILISKLSPGQEIELEAHAIKGIGKTHA 525
            T T  P  +TS S + DS            H  I+I+KL  GQE++L+A A KGIGK HA
Sbjct:  131 TVT--PVDFTSNSSTSDS----------SEHKGIIIAKLRRGQELKLKALARKGIGKDHA 178

Query:  524 KWSPVGTAWYRMLPEVV----LLGEVEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQP 357
            KWSP  T  Y   P+++    ++  + DE+   L+++ P  VF I+ +     +  V  P
Sbjct:  179 KWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTG---QVVVVDP 235

Query:  356 RNCTLCKECIRDHDLV---DLVDLRSVKDHFIFKIESTGSLPPDVLFTEAVKILEDKCER 186
               T  +E I+  + +    L+++    D F+F +ESTG+L    L   A+ IL+ K + 
Sbjct:  236 EAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDA 295

Query:  185 V 183
            +
Sbjct:  296 I 296

>TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A |
        NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization
        | chr2:6733661-6735482 FORWARD

          Length = 320

 Score =  84 bits (206), Expect = 2e-016
 Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
 Frame = -2

Query: 614 HLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVV----LLGEVEDEK 447
           H  I+I KL  GQE++L A A KGIGK HAKWSP  T  +   P+++    ++  + DE+
Sbjct: 149 HKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEE 208

Query: 446 AERLVKTCPMNVFDIEDMGNGRKRATVAQPRNCTLCKECIRDHDLV---DLVDLRSVKDH 276
              L+++ P  VF ++ +    ++  V  P   T  +E I+  + +    L+++    D 
Sbjct: 209 KIDLIESSPTKVFGMDPV---TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDS 265

Query: 275 FIFKIESTGSLPPDVLFTEAVKILEDKCERV 183
           FIF +ESTG++    L   A+ +L+ K + V
Sbjct: 266 FIFTVESTGAVKASQLVLNAIDLLKQKLDAV 296


 Score =  63 bits (152), Expect = 4e-010
 Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
 Frame = -2

Query: 1103 GNFYEDF-KVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLI 927
            G  Y+ F K+ +    +   +F++   D + ANA RR++I+EVP++AI+ V I  N+S++
Sbjct:    3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62

Query:  926 VDEVLAHRIGLIPIAADPRLFEYLT------ETDQPNEKNTIVFKLHVKCPKGQSRLHVL 765
             DE +AHR+GLIP+ ++  +    +      + D   E  ++ F+L  KC   Q+ L V 
Sbjct:   63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQT-LDVT 121

Query:  764 TNEL 753
            + +L
Sbjct:  122 SRDL 125

>TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
        DNA-directed RNA polymerase/ protein dimerization |
        chr2:6713022-6713918 FORWARD

          Length = 236

 Score =  65 bits (156), Expect = 1e-010
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
 Frame = -2

Query: 644 EFADNPIT---PSHLDILISKLSPGQEIELEAHAIKGIGKTHAKWSPVGTAWYRMLPEVV 474
           +F  N  T     H  I+I+KL  GQE++L+A A KGIGK HAKWSP  T  Y   P+++
Sbjct: 136 DFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDII 195

Query: 473 ----LLGEVEDEKAERLVKTCPMNVFDIE 399
               ++  + DE+   L+++ P  VF I+
Sbjct: 196 INEEMMNTLTDEEKIDLIESSPTKVFGID 224

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,031,614,975
Number of Sequences: 33410
Number of Extensions: 7031614975
Number of Successful Extensions: 243238164
Number of sequences better than 0.0: 0