BLASTX 7.6.2
Query= UN13965 /QuerySize=1348
(1347 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotei... 389 3e-108
TAIR9_protein||AT4G09040.1 | Symbols: | RNA recognition motif (... 164 2e-040
TAIR9_protein||AT4G09040.2 | Symbols: | RNA recognition motif (... 144 1e-034
TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA b... 126 6e-029
TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotei... 117 2e-026
TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotei... 116 3e-026
TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotei... 114 2e-025
TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRB... 113 4e-025
TAIR9_protein||AT2G35420.1 | Symbols: | zinc finger (C3HC4-type... 88 1e-017
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 78 1e-014
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 70 2e-012
TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding /... 62 6e-010
TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANG... 60 3e-009
TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 58 1e-008
TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 58 1e-008
TAIR9_protein||AT1G54080.1 | Symbols: UBP1A | oligouridylate-bin... 56 5e-008
TAIR9_protein||AT1G54080.2 | Symbols: UBP1A | oligouridylate-bin... 54 2e-007
TAIR9_protein||AT3G14100.1 | Symbols: | oligouridylate-binding ... 54 2e-007
>TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative | chr2:14898341-14899590
FORWARD
Length = 309
Score = 389 bits (997), Expect = 3e-108
Identities = 220/315 (69%), Positives = 250/315 (79%), Gaps = 13/315 (4%)
Frame = +3
Query: 24 MAVLEAALSILSFSSSSSSSSSSSSSKPHLFSRQTKPISLSIRTPTNLSPVSPL-SIPLR 200
MAVLEA+LSI SFSSSSSSS SK S K +LS+R P+NLSPV L S
Sbjct: 1 MAVLEASLSIFSFSSSSSSSKPYLFSKR---SSSLKLTALSLRIPSNLSPVFSLRSGSDN 57
Query: 201 ARRLVSVFSSVAEEETSL-----TDEKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFG 365
+RRLVSV SVAE+ETS +EKTEE TQ +NLKRKLFVFNLPWSMSVNDIS LFG
Sbjct: 58 SRRLVSVLCSVAEKETSADEETSQEEKTEE-TQNSNLKRKLFVFNLPWSMSVNDISELFG 116
Query: 366 QCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKP 545
QCGTV +VEII+QKDGKNRGFAFVTM+SGEEAQ+A++KFD+FQVSGRII V+FAR+FKKP
Sbjct: 117 QCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKP 176
Query: 546 -PKPLPPSASSSPGETRHKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRAS 722
PK S +PG+TRHKLYVSNLAWKARSTHLRE FTAADFN VSARVVFADP GR+S
Sbjct: 177 TPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSS 236
Query: 723 GYGFVSFLTREEAEDAISKLDGKELMGRPISLKFSLRSAGESEDSNTIQDNNTSEEEPEV 902
GYGFVSF TREEAE+AI+KL+GKE+MGRPI+LKFSLRSA ESED ++++ NN SE+ V
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASEDGDTV 296
Query: 903 ASDTTEASEEKTVE* 947
T SEE VE*
Sbjct: 297 EDKNT--SEENIVE* 309
>TAIR9_protein||AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795075-5797315 REVERSE
Length = 305
Score = 164 bits (413), Expect = 2e-040
Identities = 98/271 (36%), Positives = 153/271 (56%), Gaps = 10/271 (3%)
Frame = +3
Query: 138 SLSIRTPT----NLSPVSPLSIPLRARRLVSVFSSVAEE---ETSLTDEKTEETTQTTNL 296
SLS+ TP+ + P SIP ++R L S FS+ +E E+S + E +
Sbjct: 33 SLSLSTPSLCRLHRHATFPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEIS 92
Query: 297 KRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVE 476
K +L N+PW+ + DI +LF + G+V+ +E+ K +NRG F+ M+S EEA +A++
Sbjct: 93 KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 152
Query: 477 KFDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGETRHKLYVSNLAWKARSTHLREFF 656
+S + GR ++V++A+ KK K P + SP T L+V+NLA++AR+ HL+EFF
Sbjct: 153 SLESCEYEGRRLKVDYAKTKKK--KTYAPRETPSPVPT-FNLFVANLAFEARAKHLKEFF 209
Query: 657 TAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPISLKFSLRS 836
A N+VS V+F + R+SGYGFVSF T+++AE A+ + GK+ +GRPI L S +
Sbjct: 210 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQF 269
Query: 837 AGESEDSNTIQDNNTSEEEPEVASDTTEASE 929
+EEEP + T+ E
Sbjct: 270 VKLQAKEGLQPPEEEAEEEPSQSETMTQEHE 300
>TAIR9_protein||AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795075-5797193 REVERSE
Length = 245
Score = 144 bits (363), Expect = 1e-034
Identities = 80/211 (37%), Positives = 125/211 (59%), Gaps = 3/211 (1%)
Frame = +3
Query: 297 KRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVE 476
K +L N+PW+ + DI +LF + G+V+ +E+ K +NRG F+ M+S EEA +A++
Sbjct: 33 KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92
Query: 477 KFDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGETRHKLYVSNLAWKARSTHLREFF 656
+S + GR ++V++A+ KK K P + SP T L+V+NLA++AR+ HL+EFF
Sbjct: 93 SLESCEYEGRRLKVDYAKTKKK--KTYAPRETPSPVPT-FNLFVANLAFEARAKHLKEFF 149
Query: 657 TAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPISLKFSLRS 836
A N+VS V+F + R+SGYGFVSF T+++AE A+ + GK+ +GRPI L S +
Sbjct: 150 DADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQF 209
Query: 837 AGESEDSNTIQDNNTSEEEPEVASDTTEASE 929
+EEEP + T+ E
Sbjct: 210 VKLQAKEGLQPPEEEAEEEPSQSETMTQEHE 240
>TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 330
Score = 126 bits (314), Expect = 6e-029
Identities = 75/238 (31%), Positives = 135/238 (56%), Gaps = 12/238 (5%)
Frame = +3
Query: 237 EEETSLTDEKTEE---TTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQK 407
EEE +E+ EE TTQ + + +L+V NLP++++ +++S +FG+ GTV+ V+I+ K
Sbjct: 92 EEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDK 151
Query: 408 -DGKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSA----S 572
++RGF FVTM S EEA+ A++ F+S Q+ GR ++VNF + + + +
Sbjct: 152 VTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNN 211
Query: 573 SSPGETRHKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRASGYGFVSFLTR 752
S ++ HK+Y NL W S L++ F ++ A+V++ GR+ G+GF+SF +
Sbjct: 212 RSYVDSPHKVYAGNLGWNLTSQGLKDAF-GDQPGVLGAKVIYERNTGRSRGFGFISFESA 270
Query: 753 EEAEDAISKLDGKELMGRPISLKFSLRSAGESEDSNTIQDNNTSE---EEPEVASDTT 917
E + A++ ++G E+ GR + L + + ++++ T E E EV S+ +
Sbjct: 271 ENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLSNVS 328
>TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr1:22093678-22094540
REVERSE
Length = 259
Score = 117 bits (292), Expect = 2e-026
Identities = 79/222 (35%), Positives = 114/222 (51%), Gaps = 13/222 (5%)
Frame = +3
Query: 162 NLSPVSPLSIPLRA----RRLVSVFSSVAEEETSLTDEKTEETTQTTNLKRKLFVFNLPW 329
N S PL I R+ R++S +V EE D + + KL+ NLP+
Sbjct: 35 NFSTPKPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPY 94
Query: 330 SMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGR 506
++ ++ + VE++ +D G++RGFAFVTMS+ E+ ++ D + GR
Sbjct: 95 NVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGR 154
Query: 507 IIRVNFARKFKKPPKPLPPSASSSPGETRHKLYVSNLAWKARSTHLREFFTAADFNLVSA 686
++VNFA K K +PL P ET HKL+V NL+W S L F ++V A
Sbjct: 155 ALKVNFADKPKPNKEPLYP-------ETEHKLFVGNLSWTVTSESLAGAFRECG-DVVGA 206
Query: 687 RVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPI 812
RVVF GR+ GYGFV + ++ E E A+ LDG EL GR I
Sbjct: 207 RVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 248
Score = 68 bits (165), Expect = 1e-011
Identities = 42/101 (41%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Frame = +3
Query: 525 ARKFKKPPKPLPPSASSSPGETRHKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFAD 704
A K KP P P ET HKL+V NL+W S L F ++V ARVVF
Sbjct: 155 ALKVNFADKPKPNKEPLYP-ETEHKLFVGNLSWTVTSESLAGAFRECG-DVVGARVVFDG 212
Query: 705 PGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPISLKFS 827
GR+ GYGFV + ++ E E A+ LDG EL GR I + +
Sbjct: 213 DTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLA 253
Score = 67 bits (162), Expect = 2e-011
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 297 KRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAV 473
+ KLFV NL W+++ ++ F +CG V+ ++ D G++RG+ FV SS E ++A+
Sbjct: 176 EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Query: 474 EKFDSFQVSGRIIRVNFAR 530
E D F++ GR IRVN A+
Sbjct: 236 ESLDGFELEGRAIRVNLAQ 254
>TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr2:15634980-15636331
REVERSE
Length = 290
Score = 116 bits (290), Expect = 3e-026
Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 40/288 (13%)
Frame = +3
Query: 27 AVLEAALSILSFSSSS-----SSSSSSSSSKPHL-FSRQTKPISLSIRTPTNLSPVSPLS 188
A ++L++ SF+ S S +S S P L F + +S SI N SP S
Sbjct: 2 AASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWN-SPAS--- 57
Query: 189 IPLRARRLVSVFSSVAEEETSLTDEKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQ 368
R R V++ S EE D + Q+ + KLFV NLP+++ ++ LF
Sbjct: 58 ---RFARNVAITSEFEVEEDGFADVAPPK-EQSFSADLKLFVGNLPFNVDSAQLAQLFES 113
Query: 369 CGTVLSVEIIKQK-DGKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKP 545
G V VE+I K G++RGF FVTMSS E ++A ++F+ +++ GR +RVN P
Sbjct: 114 AGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAG-----P 168
Query: 546 PKPL--------PPSASSSPGE-----------TRHKLYVSNLAWKARSTHLREFFTAAD 668
P P P S+ S G + +++YV NL+W L F+
Sbjct: 169 PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQG 228
Query: 669 FNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPI 812
+V ARV++ GR+ G+GFV++ + +E ++AI LDG +L GR I
Sbjct: 229 -KVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQI 275
>TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative / RNA-binding protein
1/2/3, putative / RNA-binding protein cp31, putative |
chr5:20452677-20453965 REVERSE
Length = 290
Score = 114 bits (283), Expect = 2e-025
Identities = 70/173 (40%), Positives = 96/173 (55%), Gaps = 7/173 (4%)
Frame = +3
Query: 303 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAVEK 479
KLFV NLP+ + ++ LF Q GTV E+I +D ++RGF FVTMS+ EEA+ AVEK
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 480 FDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGETRHKLYVSNLAWKARSTHLREFFT 659
F+SF+V+GR + VN + P+ P + ++YV NL W S L F+
Sbjct: 174 FNSFEVNGRRLTVN-----RAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFS 228
Query: 660 AADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPISL 818
+V ARVV GR+ G+GFV E AI+ LDG+ L GR I +
Sbjct: 229 EHG-KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280
>TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding |
chr4:12766223-12767952 REVERSE
Length = 330
Score = 113 bits (281), Expect = 4e-025
Identities = 67/171 (39%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Frame = +3
Query: 303 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAVEK 479
KLFV NL + ++ ++ LF Q GTV E+I ++ ++RGF FVTMSS +EA++AVEK
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 480 FDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGETRHKLYVSNLAWKARSTHLREFFT 659
F+ + ++GR++ VN K P+ P + E ++YV NL W + L + F+
Sbjct: 211 FNRYDLNGRLLTVN-----KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFS 265
Query: 660 AADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPI 812
+V ARVV+ GR+ G+GFV+ +E +AIS LDG+ L GR I
Sbjct: 266 EHG-KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 315
>TAIR9_protein||AT2G35420.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr2:14899715-14900479 REVERSE
Length = 255
Score = 88 bits (217), Expect = 1e-017
Identities = 49/74 (66%), Positives = 52/74 (70%), Gaps = 7/74 (9%)
Frame = -1
Query: 1311 EENTPTTTTTSSSKRLPEASSAWRFSRSYSTGQFMGKTRDVTMKIKGRHYQTGSCASFDE 1132
EEN P T SSKRL EA SAWRFSRS+STG FM KT D +K K RHYQTGSC SFDE
Sbjct: 176 EENPP---TAGSSKRLIEA-SAWRFSRSHSTGHFMVKTTDANVKSKRRHYQTGSCVSFDE 231
Query: 1131 LTRYDEATGYGMAW 1090
LTRY+ G G W
Sbjct: 232 LTRYE---GAGWQW 242
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 78 bits (191), Expect = 1e-014
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 7/196 (3%)
Frame = +3
Query: 261 EKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVT 440
E+ + T ++V NLP + +++ FG+ G + S +++ + G +R F FV
Sbjct: 216 ERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 441 MSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGETRHK-----LY 605
E A SAVEK + + ++ V A+K + + L K LY
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 606 VSNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLD 785
+ NL L+E F +++ V++ V +P G + G+GFV++ EEA A+S+++
Sbjct: 336 LKNLDDSVDDEKLKEMF--SEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 786 GKELMGRPISLKFSLR 833
GK + +P+ + + R
Sbjct: 394 GKMIGRKPLYIALAQR 409
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 70 bits (171), Expect = 2e-012
Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 7/181 (3%)
Frame = +3
Query: 306 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 485
++V NLP ++ +++ FG+ G + S ++K + G +R F FV S E A AVEK +
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 486 SFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGETRHK-----LYVSNLAWKARSTHLRE 650
+ ++ V A+K + L K LY+ NL L+E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 651 FFTAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPISLKFSL 830
F +++ V++ V + G + G+GFV++ EEA A+ +++GK + +P+ + +
Sbjct: 347 MF--SEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
Query: 831 R 833
R
Sbjct: 405 R 405
>TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 62 bits (150), Expect = 6e-010
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Frame = +3
Query: 303 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQK-DGKNRGFAFVTMSSGEEAQSAVEK 479
KLFV NL +++ ++ LF G V VE+I K G++RGF FVTMS+ E ++A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 480 FDSFQVSGRIIRVNFARKFKKPPKP 554
F+ ++ GR +RVN PP P
Sbjct: 160 FNGYEFEGRPLRVNAG-----PPPP 179
>TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANGAP1 (RAN
GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding
| chr3:6404270-6407822 REVERSE
Length = 637
Score = 60 bits (144), Expect = 3e-009
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 13/214 (6%)
Frame = +3
Query: 234 AEEETSLTDEKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDG 413
AE++++ KT T QT + LF NL + ++ +DI N F + G V+ V + DG
Sbjct: 363 AEQKSNAKQPKT-PTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDG 421
Query: 414 KNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGETR 593
+G+ + +S EEAQ A+E + + GR +R++ A + P P G
Sbjct: 422 SFKGYGHIEFASPEEAQKALE-MNGKLLLGRDVRLDLANERGTPRNSNP--GRKGEGSQS 478
Query: 594 HKLYV----SNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRASGYGFVSFLTREEA 761
+YV S+L LR F+ + V G + G+ ++ +
Sbjct: 479 RTIYVRGFSSSLGEDEIKKELRSHFSKCG-EVTRVHVPTDRETGASRGFAYIDLTS---G 534
Query: 762 EDAISKLDGKELMGRPISLKFSL-RSAGESEDSN 860
D +L G E+ G I ++ S R + E SN
Sbjct: 535 FDEALQLSGSEIGGGNIHVEESRPRDSDEGRSSN 568
>TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 58 bits (139), Expect = 1e-008
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +3
Query: 597 KLYVSNLAWKARSTHLREFFTAADFNLVSARVVFAD-PGGRASGYGFVSFLTREEAEDAI 773
KL+V L+W + L++ FT+ F V+ V AD GR+ G+GFVSF + A +AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTS--FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 774 SKLDGKELMGRPISLKFSLRSAGESEDS 857
++DGKEL GR I + + + S
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSS 121
>TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 58 bits (139), Expect = 1e-008
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +3
Query: 597 KLYVSNLAWKARSTHLREFFTAADFNLVSARVVFAD-PGGRASGYGFVSFLTREEAEDAI 773
KL+V L+W + L++ FT+ F V+ V AD GR+ G+GFVSF + A +AI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTS--FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 774 SKLDGKELMGRPISLKFSLRSAGESEDS 857
++DGKEL GR I + + + S
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSS 121
>TAIR9_protein||AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 427
Score = 56 bits (133), Expect = 5e-008
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 5/161 (3%)
Frame = +3
Query: 471 VEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGET--RHKLYVSNLAWKARSTHL 644
V FD S I+ +N F +P K A+ +T ++V +L+ + L
Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAAL 164
Query: 645 REFFTAADFNLVS-ARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPISLK 821
+ F+A FN S ARV++ GR+ G+GFVSF +++A+ AI++++GK + R I
Sbjct: 165 FDSFSA--FNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCN 222
Query: 822 FSLRSAGESEDSNTIQDNNTSEEEPEVASDTTEASEEKTVE 944
++ + A ED ++ + E + D E S E E
Sbjct: 223 WATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPE 263
>TAIR9_protein||AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 431
Score = 54 bits (129), Expect = 2e-007
Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Frame = +3
Query: 471 VEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGET--RHKLYVSNLAWKARSTHL 644
V FD S I+ +N F +P K A+ +T ++V +L+ + L
Sbjct: 105 VHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAAL 164
Query: 645 REFFTAADFNLVS-----ARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRP 809
+ F+A FN S ARV++ GR+ G+GFVSF +++A+ AI++++GK + R
Sbjct: 165 FDSFSA--FNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQ 222
Query: 810 ISLKFSLRSAGESEDSNTIQDNNTSEEEPEVASDTTEASEEKTVE 944
I ++ + A ED ++ + E + D E S E E
Sbjct: 223 IRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPE 267
>TAIR9_protein||AT3G14100.1 | Symbols: | oligouridylate-binding protein,
putative | chr3:4673027-4675950 FORWARD
Length = 428
Score = 54 bits (128), Expect = 2e-007
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Frame = +3
Query: 471 VEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSASSSPGET--RHKLYVSNLAWKARSTHL 644
V FD + I+ +N F +P K A+ +T ++V +L+ + L
Sbjct: 101 VHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATL 160
Query: 645 REFFTAADFNLVSARVVFADPGGRASGYGFVSFLTREEAEDAISKLDGKELMGRPISLKF 824
+ F+ + ARV++ GR+ G+GFVSF +++A+ AI++++GK L R I +
Sbjct: 161 YQSFSVFS-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNW 219
Query: 825 SLRSAGESEDSNTIQDNNTSEEEPEVASDTTEASEEKTVE 944
+ + A +D + + E + D E E+T E
Sbjct: 220 ATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPE 259
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,338,858,454
Number of Sequences: 33410
Number of Extensions: 7338858454
Number of Successful Extensions: 248633092
Number of sequences better than 0.0: 0
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