BLASTX 7.6.2
Query= UN14021 /QuerySize=912
(911 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G03130.1 | Symbols: | transcription coactivat... 158 6e-039
TAIR9_protein||AT3G21480.1 | Symbols: | FUNCTIONS IN: molecular... 115 6e-026
TAIR9_protein||AT4G03120.1 | Symbols: | proline-rich family pro... 101 7e-022
TAIR9_protein||AT1G61080.1 | Symbols: | proline-rich family pro... 62 4e-010
TAIR9_protein||AT4G13340.1 | Symbols: | leucine-rich repeat fam... 56 2e-008
TAIR9_protein||AT3G22800.1 | Symbols: | leucine-rich repeat fam... 54 2e-007
TAIR9_protein||AT4G20440.1 | Symbols: smB | smB (small nuclear r... 49 5e-006
TAIR9_protein||AT4G20440.2 | Symbols: smB | smB (small nuclear r... 49 5e-006
TAIR9_protein||AT4G20440.3 | Symbols: smB | smB (small nuclear r... 49 5e-006
TAIR9_protein||AT4G20440.4 | Symbols: | smB (small nuclear ribo... 49 5e-006
>TAIR9_protein||AT4G03130.1 | Symbols: | transcription coactivator |
chr4:1387781-1390646 REVERSE
Length = 767
Score = 158 bits (398), Expect = 6e-039
Identities = 76/100 (76%), Positives = 88/100 (88%)
Frame = +1
Query: 10 TSLARAKQHPLLKGLNVCITPNIKPDRGMIAHLVKLTQGQVVEISEIIAAANRKIPDDLL 189
TSLARAKQHPLLKG VCITP+IKP RGMI LVK+TQGQVVE SEIIAA +R P+D+L
Sbjct: 656 TSLARAKQHPLLKGFKVCITPSIKPSRGMITDLVKMTQGQVVEASEIIAAEDRNFPEDVL 715
Query: 190 IISCEDDRDLCLPFIDQGAEIYTAELLLNGIVIQKLEYDR 309
I+SC++DRD CLPF++QGA I+T+ELLLNGIVIQKLEY R
Sbjct: 716 ILSCKEDRDFCLPFVNQGAVIFTSELLLNGIVIQKLEYAR 755
>TAIR9_protein||AT3G21480.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357);
BEST Arabidopsis thaliana protein match is: transcription coactivator
(TAIR:AT4G03130.1); Has 489 Blast hits to 455 proteins in 115 species:
Archae - 2; Bacteria - 37; Metazoa - 270; Fungi - 30; Plants - 45;
Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). |
chr3:7567730-7571990 FORWARD
Length = 1042
Score = 115 bits (286), Expect = 6e-026
Identities = 56/107 (52%), Positives = 78/107 (72%)
Frame = +1
Query: 1 SMRTSLARAKQHPLLKGLNVCITPNIKPDRGMIAHLVKLTQGQVVEISEIIAAANRKIPD 180
+M SLARA+Q PLL+G V ITPN KP I LVK G VE + + K+P+
Sbjct: 910 NMGVSLARARQFPLLQGRRVFITPNTKPALNTITTLVKAVHGLPVERLGRSSLSEDKVPE 969
Query: 181 DLLIISCEDDRDLCLPFIDQGAEIYTAELLLNGIVIQKLEYDRHCLF 321
+LL++SCE+DR +C+PF+++GAE+Y++ELLLNGIV Q+LEY+R+ LF
Sbjct: 970 NLLVLSCEEDRAICIPFLERGAEVYSSELLLNGIVTQRLEYERYRLF 1016
>TAIR9_protein||AT4G03120.1 | Symbols: | proline-rich family protein |
chr4:1385747-1387331 FORWARD
Length = 208
Score = 101 bits (251), Expect = 7e-022
Identities = 54/88 (61%), Positives = 56/88 (63%), Gaps = 13/88 (14%)
Frame = -3
Query: 777 MPPPGVPQMMAPPGGPLPPP-----PPQNGILRPPGLAPIPGQGGAPPPNYSGLPPPPPY 613
M PPG P P G L PP P Q G PPG+APIPGQGG PPPNY+GLPPPPPY
Sbjct: 119 MAPPGAPLPPPPQNGILRPPGMAPIPGQGG--GPPGMAPIPGQGGGPPPNYNGLPPPPPY 176
Query: 612 HTNQAAAPPSVGF-----NNQNPGAESP 544
HTN AAPPS F NN NP AESP
Sbjct: 177 HTN-PAAPPSGNFNNPNLNNPNPSAESP 203
Score = 101 bits (250), Expect = 9e-022
Identities = 52/82 (63%), Positives = 55/82 (67%), Gaps = 12/82 (14%)
Frame = -3
Query: 783 GYMPPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPP-----PNYSGLPPPP 619
GYMPPPGVPQMMAPPG PL PPPPQNGILRPPG+APIPGQGG PP P G PPP
Sbjct: 108 GYMPPPGVPQMMAPPGAPL-PPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPP- 165
Query: 618 PYHTNQAAAPPSVGFNNQNPGA 553
N PP ++ NP A
Sbjct: 166 ----NYNGLPPPPPYHT-NPAA 182
>TAIR9_protein||AT1G61080.1 | Symbols: | proline-rich family protein |
chr1:22493194-22497019 REVERSE
Length = 908
Score = 62 bits (149), Expect = 4e-010
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Frame = -3
Query: 774 PPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPPP-------NYSGLPPPPP 616
PPP P + P PPPPP + PP P PG APPP + PPPPP
Sbjct: 509 PPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPP 568
Query: 615 YHTNQAAAPPSVGFNNQNPGAESP 544
N+A +PP + N G P
Sbjct: 569 PMQNRAPSPPPMPMGNSGSGGPPP 592
>TAIR9_protein||AT4G13340.1 | Symbols: | leucine-rich repeat family protein /
extensin family protein | chr4:7758610-7760892 FORWARD
Length = 761
Score = 56 bits (134), Expect = 2e-008
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = -3
Query: 774 PPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYSGLPPPPPYHTNQAA 595
PPP P + +PP P PPPPP PP P P PPP YS PPPPP
Sbjct: 456 PPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPP-----PPPVYSPPPPPPPPPPPPVY 510
Query: 594 APPSVGFNNQNPGAESP 544
+PP + P SP
Sbjct: 511 SPPPPPVYSSPPPPPSP 527
>TAIR9_protein||AT3G22800.1 | Symbols: | leucine-rich repeat family protein /
extensin family protein | chr3:8063063-8064475 REVERSE
Length = 471
Score = 54 bits (127), Expect = 2e-007
Identities = 28/65 (43%), Positives = 30/65 (46%)
Frame = -3
Query: 774 PPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYSGLPPPPPYHTNQAA 595
PPP P PP P PPPPP PP + P P PP Y PPPPPY
Sbjct: 379 PPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPPPP 438
Query: 594 APPSV 580
+PP V
Sbjct: 439 SPPYV 443
>TAIR9_protein||AT4G20440.1 | Symbols: smB | smB (small nuclear
ribonucleoprotein associated protein B) | chr4:11022843-11023616
REVERSE
Length = 258
Score = 49 bits (114), Expect = 5e-006
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -3
Query: 759 PQMMAP----PGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYSGLPPPPPYHTNQAAA 592
PQ+ AP P G + PPPP G P G P P G PPP PPPP Y
Sbjct: 151 PQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210
Query: 591 PP 586
PP
Sbjct: 211 PP 212
>TAIR9_protein||AT4G20440.2 | Symbols: smB | smB (small nuclear
ribonucleoprotein associated protein B) | chr4:11022843-11023616
REVERSE
Length = 258
Score = 49 bits (114), Expect = 5e-006
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -3
Query: 759 PQMMAP----PGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYSGLPPPPPYHTNQAAA 592
PQ+ AP P G + PPPP G P G P P G PPP PPPP Y
Sbjct: 151 PQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210
Query: 591 PP 586
PP
Sbjct: 211 PP 212
>TAIR9_protein||AT4G20440.3 | Symbols: smB | smB (small nuclear
ribonucleoprotein associated protein B) | chr4:11022843-11023616
REVERSE
Length = 258
Score = 49 bits (114), Expect = 5e-006
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -3
Query: 759 PQMMAP----PGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYSGLPPPPPYHTNQAAA 592
PQ+ AP P G + PPPP G P G P P G PPP PPPP Y
Sbjct: 151 PQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210
Query: 591 PP 586
PP
Sbjct: 211 PP 212
>TAIR9_protein||AT4G20440.4 | Symbols: | smB (small nuclear ribonucleoprotein
associated protein B) | chr4:11022843-11023616 REVERSE
Length = 258
Score = 49 bits (114), Expect = 5e-006
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = -3
Query: 759 PQMMAP----PGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYSGLPPPPPYHTNQAAA 592
PQ+ AP P G + PPPP G P G P P G PPP PPPP Y
Sbjct: 151 PQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210
Query: 591 PP 586
PP
Sbjct: 211 PP 212
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,338,858,454
Number of Sequences: 33410
Number of Extensions: 7338858454
Number of Successful Extensions: 248633092
Number of sequences better than 0.0: 0
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