BLASTX 7.6.2
Query= UN14111 /QuerySize=1004
(1003 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PR... 389 1e-108
TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nu... 148 9e-036
TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucle... 147 1e-035
TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucle... 147 1e-035
TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucle... 109 3e-024
>TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA
binding / nucleic acid binding / nucleotide binding |
chr2:19517229-19518686 FORWARD
Length = 251
Score = 389 bits (999), Expect = 1e-108
Identities = 196/252 (77%), Positives = 214/252 (84%), Gaps = 10/252 (3%)
Frame = +1
Query: 67 ANKAGSEVSSPNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWV 246
AN+ G SPNQTIYINNLNEKVKLDELKKSLNAVFSQ+GKI+E+LAFKT KHKGQAWV
Sbjct: 6 ANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWV 65
Query: 247 VFDNPESASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEK-GGK 423
VFDN ESAS AI+KMN FPFYDK MRIQ+AKTKSDV+AKADGTFVPREKRKRHEEK GGK
Sbjct: 66 VFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGK 125
Query: 424 KKKEQHHDNTRMPIP---PYPGVYGSAPPLSQVPYPGGGGGGGGVKSNLPEAPAPPNNIL 594
KKK+QHHD+T+M +P YPGVYG+APPLSQVPYP GG+K N+PEAPAPPNNIL
Sbjct: 126 KKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYP------GGMKPNMPEAPAPPNNIL 179
Query: 595 FVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGLEGFTIH 774
FVQ+LPH+TTP LQ LF Y GFKEVRM+ AKPGIAFVEFADEMQST AM GL+GF I
Sbjct: 180 FVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ 239
Query: 775 QTPMHITYAKK* 810
Q M ITYAKK*
Sbjct: 240 QNQMLITYAKK* 251
>TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nuclear
ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide
binding | chr2:12905557-12907434 REVERSE
Length = 233
Score = 148 bits (371), Expect = 9e-036
Identities = 65/119 (54%), Positives = 94/119 (78%)
Frame = +1
Query: 97 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 276
PNQ+IYI NLNE++K +ELK+SL +FSQ+G+I++V+A KT K +GQAWV F +A +
Sbjct: 8 PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGH 67
Query: 277 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNT 453
A+ +M FPFYDKPMR+Q+AK KSD +AKA+GTFVP++K+++ EEK +K+++ NT
Sbjct: 68 AVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNT 126
Score = 99 bits (244), Expect = 5e-021
Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Frame = +1
Query: 577 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 756
PPNNILF+Q+LPH+TT LQ LF Y GFKE+RM+ AKPGIAFVE+ D++Q++ AM L
Sbjct: 155 PPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPL 214
Query: 757 EGFTI-HQTPMHITYAKK* 810
+GF I Q PM I++AKK*
Sbjct: 215 QGFKITPQNPMVISFAKK* 233
>TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 230
Score = 147 bits (370), Expect = 1e-035
Identities = 68/125 (54%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Frame = +1
Query: 97 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 276
PNQ+IYI ++NEK+K +ELK+SL +FSQ+G++++V+A KT K +GQAWVVF +ASN
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASN 67
Query: 277 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 456
A+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H + T+
Sbjct: 68 AVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEETQ 124
Query: 457 MPIPP 471
P P
Sbjct: 125 QPSMP 129
Score = 92 bits (228), Expect = 4e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +1
Query: 577 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 756
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 211
Query: 757 EGFTI-HQTPMHITYAKK* 810
+GF I Q PM +++AKK*
Sbjct: 212 QGFKITPQNPMVVSFAKK* 230
>TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 229
Score = 147 bits (370), Expect = 1e-035
Identities = 68/125 (54%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Frame = +1
Query: 97 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 276
PNQ+IYI ++NEK+K +ELK+SL +FSQ+G++++V+A KT K +GQAWVVF +ASN
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASN 67
Query: 277 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 456
A+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H + T+
Sbjct: 68 AVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEETQ 124
Query: 457 MPIPP 471
P P
Sbjct: 125 QPSMP 129
Score = 92 bits (228), Expect = 4e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +1
Query: 577 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 756
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 151 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 210
Query: 757 EGFTI-HQTPMHITYAKK* 810
+GF I Q PM +++AKK*
Sbjct: 211 QGFKITPQNPMVVSFAKK* 229
>TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135982-2137533
FORWARD
Length = 201
Score = 109 bits (272), Expect = 3e-024
Identities = 50/97 (51%), Positives = 73/97 (75%), Gaps = 3/97 (3%)
Frame = +1
Query: 181 QYGKIVEVLAFKTLKHKGQAWVVFDNPESASNAISKMNGFPFYDKPMRIQFAKTKSDVIA 360
++G++++V+A KT K +GQAWVVF +ASNA+ +M FPFYDKPMRIQ+AK+KSD +
Sbjct: 7 KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66
Query: 361 KADGTFVPREKRKRHEEKGGKKKKEQHHDNTRMPIPP 471
KA+G+FVP+EK+ + EEK +K+ H + T+ P P
Sbjct: 67 KAEGSFVPKEKKMKQEEKVERKR---HAEETQQPSMP 100
Score = 92 bits (228), Expect = 4e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +1
Query: 577 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 756
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 123 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 182
Query: 757 EGFTI-HQTPMHITYAKK* 810
+GF I Q PM +++AKK*
Sbjct: 183 QGFKITPQNPMVVSFAKK* 201
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,430,683,274
Number of Sequences: 33410
Number of Extensions: 7430683274
Number of Successful Extensions: 253939996
Number of sequences better than 0.0: 0
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