BLASTX 7.6.2
Query= UN14839 /QuerySize=1031
(1030 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll... 492 2e-139
TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll... 398 3e-111
TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll... 309 3e-084
TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll... 303 1e-082
TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll... 151 7e-037
TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVE... 151 9e-037
TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB... 144 1e-034
TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB... 144 1e-034
TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1... 144 1e-034
TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment bin... 141 9e-034
TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment bin... 141 9e-034
TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT... 133 2e-031
TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light h... 127 1e-029
TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; ... 97 1e-020
TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; ... 97 1e-020
TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; ... 92 4e-019
TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; ... 92 4e-019
TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | ... 90 2e-018
TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; ch... 90 2e-018
>TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 242
Score = 492 bits (1265), Expect = 2e-139
Identities = 234/242 (96%), Positives = 237/242 (97%)
Frame = +3
Query: 90 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVALPNAGNVGRVRMAAHWMPGEPRPAYLDG 269
MASNSLMSCGIAAVYPSLLSSSKSKFVSAGV LPNAGNVGR+RMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 270 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 449
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 450 VPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 629
+PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 180
Query: 630 PKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNIGDVVIPF 809
PKK EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH NIGD+VIPF
Sbjct: 181 PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPF 240
Query: 810 N* 815
N*
Sbjct: 241 N* 242
>TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339881-20340922 REVERSE
Length = 214
Score = 398 bits (1022), Expect = 3e-111
Identities = 190/196 (96%), Positives = 193/196 (98%)
Frame = +3
Query: 90 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVALPNAGNVGRVRMAAHWMPGEPRPAYLDG 269
MASNSLMSCGIAAVYPSLLSSSKSKFVSAGV LPNAGNVGR+RMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 270 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 449
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 450 VPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 629
+PGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKD 180
Query: 630 PKKFEELKVKEIKNGR 677
PKK EELKVKEIKNG+
Sbjct: 181 PKKLEELKVKEIKNGK 196
>TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 208
Score = 309 bits (789), Expect = 3e-084
Identities = 147/151 (97%), Positives = 149/151 (98%)
Frame = +3
Query: 90 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVALPNAGNVGRVRMAAHWMPGEPRPAYLDG 269
MASNSLMSCGIAAVYPSLLSSSKSKFVSAGV LPNAGNVGR+RMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 270 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 449
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 450 VPGGQATYLGNPVPWGTLPTILAIEFLAIAF 542
+PGGQATYLGNPVPWGTLPTILAIEFLAIAF
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLAIAF 151
Score = 118 bits (294), Expect = 8e-027
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +3
Query: 645 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNIGDVVIPFN* 815
ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH NIGD+VIPFN*
Sbjct: 152 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPFN* 208
>TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339961-20340922 REVERSE
Length = 165
Score = 303 bits (775), Expect = 1e-082
Identities = 144/148 (97%), Positives = 146/148 (98%)
Frame = +3
Query: 90 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVALPNAGNVGRVRMAAHWMPGEPRPAYLDG 269
MASNSLMSCGIAAVYPSLLSSSKSKFVSAGV LPNAGNVGR+RMAAHWMPGEPRPAYLDG
Sbjct: 1 MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAGNVGRIRMAAHWMPGEPRPAYLDG 60
Query: 270 SAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 449
SAPGDFGFDPLGLGEVP NLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA
Sbjct: 61 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 120
Query: 450 VPGGQATYLGNPVPWGTLPTILAIEFLA 533
+PGGQATYLGNPVPWGTLPTILAIEFLA
Sbjct: 121 LPGGQATYLGNPVPWGTLPTILAIEFLA 148
>TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll binding |
chr3:22745736-22747032 FORWARD
Length = 258
Score = 151 bits (381), Expect = 7e-037
Identities = 104/263 (39%), Positives = 133/263 (50%), Gaps = 43/263 (16%)
Frame = +3
Query: 90 MASNSLMSCGIAAV-YPSLLSSS----KSKFVSAGVALPNAGNVGRVRMAAH------WM 236
MAS+ S IAA+ PS L K K V+ P+A VR A W
Sbjct: 1 MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDAS----VRAVAADPDRPIWF 56
Query: 237 PGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGY 416
PG P +LDGS PGDFGFDPLGL P++L+ ++E++HCRWAML GI +PE L
Sbjct: 57 PGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTK 116
Query: 417 GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKD 572
+ W G+ Y + T+ +E + I + E +R S+ D
Sbjct: 117 IGILNTPSW--YTAGEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTD 168
Query: 573 P---------EKKKYPGGA-FDPLGY-SKDPKKFEELKVKEIKNGRLALLAFVGFCVQQS 719
P YPGG FDPLG+ S P K +EL+ KEIKNGRLA+LA +G Q
Sbjct: 169 PVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH- 227
Query: 720 AYPGTGPLENLATHLADPWHKNI 788
Y GTGP++NL HLADP H I
Sbjct: 228 IYTGTGPIDNLFAHLADPGHATI 250
>TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX
OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408200-6409496
FORWARD
Length = 281
Score = 151 bits (380), Expect = 9e-037
Identities = 85/192 (44%), Positives = 115/192 (59%), Gaps = 12/192 (6%)
Frame = +3
Query: 252 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 422
P YL+G GD+G+DP GLG+ PEN +Y+ ELIH RWAML G ++PEAL YG
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 423 -----WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR-SMEKDPEKK 584
W K + G Y G +P + ++A E + + E+ R + D E K
Sbjct: 142 GPEAVWFKTGA-LLLDGNTLNYFGKNIPINLVLAVVA-EVVLLGGAEYYRITNGLDFEDK 199
Query: 585 KYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 764
+PGG FDPLG +KDP++ LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL
Sbjct: 200 LHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHL 258
Query: 765 ADPWHKNIGDVV 800
+DP+ N+ V+
Sbjct: 259 SDPFGNNLLTVI 270
>TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL
A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-10473246
REVERSE
Length = 268
Score = 144 bits (361), Expect = 1e-034
Identities = 87/191 (45%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Frame = +3
Query: 252 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 410
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 411 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 575
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 576 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 752
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 753 ATHLADPWHKN 785
A HLADP + N
Sbjct: 245 ADHLADPVNNN 255
>TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL
A/B-BINDING PROTEIN 2); chlorophyll binding | chr1:10475089-10475892
REVERSE
Length = 268
Score = 144 bits (361), Expect = 1e-034
Identities = 87/191 (45%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Frame = +3
Query: 252 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 410
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 411 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 575
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 576 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 752
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 753 ATHLADPWHKN 785
A HLADP + N
Sbjct: 245 ADHLADPVNNN 255
>TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1
(CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding |
chr1:10478071-10478874 FORWARD
Length = 268
Score = 144 bits (361), Expect = 1e-034
Identities = 87/191 (45%), Positives = 107/191 (56%), Gaps = 15/191 (7%)
Frame = +3
Query: 252 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL------- 410
P+YL G PGD+G+D GL PE R +E E+IH RWAML G + PE L
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 411 GYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEKDP--- 575
G W KA GG YLGNP V ++ I A + + + VE R P
Sbjct: 127 GEAVWFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGE 185
Query: 576 -EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 752
E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V Q+ G GP+ENL
Sbjct: 186 AEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENL 244
Query: 753 ATHLADPWHKN 785
A HLADP + N
Sbjct: 245 ADHLADPVNNN 255
>TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 141 bits (354), Expect = 9e-034
Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Frame = +3
Query: 225 AHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPE 404
A W+PG P YLDG+ GD+GFDPLGLGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 405 AL---GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME--- 566
L G N E AV + + T++ ++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 567 -----------------KDPEKKKYPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLA 692
+ + YPGG +PLG +KD + + K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 216
Query: 693 FVGFCVQQSAYPGTGPLENLATHLADPWHKNI 788
+GF VQ S TGP++NL HL++PWHK I
Sbjct: 217 MLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 247
>TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 141 bits (354), Expect = 9e-034
Identities = 85/212 (40%), Positives = 118/212 (55%), Gaps = 35/212 (16%)
Frame = +3
Query: 225 AHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPE 404
A W+PG P YLDG+ GD+GFDPLGLGE PE+L+ Y ++EL+H R+AML V GIL +
Sbjct: 47 ATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTD 106
Query: 405 AL---GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME--- 566
L G N E AV + + T++ ++FL + F E +R M+
Sbjct: 107 LLRTTGIRNLPVWYEAGAV----------KFDFASTKTLIVVQFLLMGFAETKRYMDFVS 156
Query: 567 -----------------KDPEKKKYPGG-AFDPLGYSKDPKKFEELKVKEIKNGRLALLA 692
+ + YPGG +PLG +KD + + K+KEIKNGRLA++A
Sbjct: 157 PGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMA 216
Query: 693 FVGFCVQQSAYPGTGPLENLATHLADPWHKNI 788
+GF VQ S TGP++NL HL++PWHK I
Sbjct: 217 MLGFFVQASV-THTGPIDNLVEHLSNPWHKTI 247
>TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING
CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding |
chr3:17493622-17494773 REVERSE
Length = 252
Score = 133 bits (333), Expect = 2e-031
Identities = 80/193 (41%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
Frame = +3
Query: 231 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 410
W+PG P YL GS GD GFDPLGL E PENL+ + ++EL++ RWAML V G+L+PE
Sbjct: 57 WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116
Query: 411 GYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTIL--AIEFLAIAFVEHQRSMEKDPEKK 584
+ EW G+ Y + + IL +E +++ S+ +DP K
Sbjct: 117 TKIGIINVPEW--YDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 174
Query: 585 KY--PGGAFDPLGYSKDPKKF---EELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 749
+Y P G G +P F +E K KE+ NGRLA+LAF+GF VQ + G GP EN
Sbjct: 175 QYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFEN 233
Query: 750 LATHLADPWHKNI 788
L HL+DPWH I
Sbjct: 234 LLQHLSDPWHNTI 246
>TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light harvesting
complex PSII); chlorophyll binding | chr2:16745884-16747190 FORWARD
Length = 277
Score = 127 bits (319), Expect = 1e-029
Identities = 68/144 (47%), Positives = 98/144 (68%), Gaps = 4/144 (2%)
Frame = +3
Query: 327 LERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWGTLP 506
++R++E ELIH RWAML G + EAL W A + V G ++YLG P+P+ +L
Sbjct: 134 IQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEG--SSYLGQPLPF-SLT 190
Query: 507 TILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLAL 686
T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K + LK+ EIK+ RLA+
Sbjct: 191 TLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAM 250
Query: 687 LAFVGFCVQQSAYPGTGPLENLAT 758
+AF+ F + Q+A+ G GP+ LAT
Sbjct: 251 VAFLIFAL-QAAFTGKGPVSFLAT 273
>TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll
binding | chr2:14524818-14525618 FORWARD
Length = 267
Score = 97 bits (240), Expect = 1e-020
Identities = 65/144 (45%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Frame = +3
Query: 372 MLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFV 545
+LA G+ EA+ W KA GG YLGNP V ++ I A + + + V
Sbjct: 117 LLARNGVKFGEAV----WFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAV 171
Query: 546 EHQRSMEKDP----EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 713
E R P E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 172 EGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV- 230
Query: 714 QSAYPGTGPLENLATHLADPWHKN 785
Q+ G GPLENLA HLADP + N
Sbjct: 231 QAIVTGKGPLENLADHLADPVNNN 254
>TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll
binding | chr2:14522716-14523513 REVERSE
Length = 266
Score = 97 bits (240), Expect = 1e-020
Identities = 65/144 (45%), Positives = 81/144 (56%), Gaps = 12/144 (8%)
Frame = +3
Query: 372 MLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFV 545
+LA G+ EA+ W KA GG YLGNP V ++ I A + + + V
Sbjct: 116 LLARNGVKFGEAV----WFKAGSQIFSDGG-LDYLGNPSLVHAQSILAIWATQVILMGAV 170
Query: 546 EHQRSMEKDP----EKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 713
E R P E YPGG+FDPLG + DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 171 EGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV- 229
Query: 714 QSAYPGTGPLENLATHLADPWHKN 785
Q+ G GPLENLA HLADP + N
Sbjct: 230 QAIVTGKGPLENLADHLADPVNNN 253
>TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll
binding | chr2:1823449-1824331 REVERSE
Length = 266
Score = 92 bits (228), Expect = 4e-019
Identities = 61/144 (42%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Frame = +3
Query: 384 PGILVPEALGYGN--WVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEH 551
P IL + +G W KA GG YLGNP + ++ I A++ + + F+E
Sbjct: 115 PEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEG 173
Query: 552 QR------SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 713
R DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 174 YRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV- 229
Query: 714 QSAYPGTGPLENLATHLADPWHKN 785
Q+ G GP+ENL HLADP N
Sbjct: 230 QAIVTGKGPIENLFDHLADPVANN 253
>TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll
binding | chr2:1799436-1800329 REVERSE
Length = 266
Score = 92 bits (228), Expect = 4e-019
Identities = 61/144 (42%), Positives = 79/144 (54%), Gaps = 15/144 (10%)
Frame = +3
Query: 384 PGILVPEALGYGN--WVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEH 551
P IL + +G W KA GG YLGNP + ++ I A++ + + F+E
Sbjct: 115 PEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWAVQVVLMGFIEG 173
Query: 552 QR------SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 713
R DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 174 YRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV- 229
Query: 714 QSAYPGTGPLENLATHLADPWHKN 785
Q+ G GP+ENL HLADP N
Sbjct: 230 QAIVTGKGPIENLFDHLADPVANN 253
>TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3;
chlorophyll binding | chr3:10256002-10256921 FORWARD
Length = 267
Score = 90 bits (222), Expect = 2e-018
Identities = 60/144 (41%), Positives = 78/144 (54%), Gaps = 15/144 (10%)
Frame = +3
Query: 384 PGILVPEALGYGN--WVKAQEWAAVPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEH 551
P IL + +G W KA GG YLGNP + ++ I A + + + F+E
Sbjct: 116 PEILSKNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFIEG 174
Query: 552 QR------SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQ 713
R DP YPGGAFDPL ++DP+ F ELKVKE+KNGRLA+ + GF V
Sbjct: 175 YRIGGGPLGEGLDP---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV- 230
Query: 714 QSAYPGTGPLENLATHLADPWHKN 785
Q+ G GP+ENL H+ADP N
Sbjct: 231 QAIVTGKGPIENLFDHIADPVANN 254
>TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; chlorophyll
binding | chr1:6612806-6613799 FORWARD
Length = 271
Score = 90 bits (221), Expect = 2e-018
Identities = 39/71 (54%), Positives = 50/71 (70%)
Frame = +3
Query: 231 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL 410
W PG P +LDGS PGDFGFDPLGLG P+ L+ + ++ELIH RWAMLAV GI++PE L
Sbjct: 68 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECL 127
Query: 411 GYGNWVKAQEW 443
+++ W
Sbjct: 128 ERLGFIENFSW 138
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,739,053,950
Number of Sequences: 33410
Number of Extensions: 7739053950
Number of Successful Extensions: 259342262
Number of sequences better than 0.0: 0
|
