BLASTX 7.6.2
Query= UN14877 /QuerySize=808
(807 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II ... 353 3e-095
gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subu... 347 1e-093
gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II ... 341 8e-092
gi|224056563|ref|XP_002298912.1| predicted protein [Populus tric... 339 4e-091
gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA... 337 2e-090
gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula] 335 4e-090
gi|225434800|ref|XP_002282298.1| PREDICTED: hypothetical protein... 330 2e-088
gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare ... 326 3e-087
gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II ... 323 3e-086
gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare ... 323 3e-086
gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japo... 322 5e-086
gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT... 301 9e-080
gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrel... 301 1e-079
gi|307105977|gb|EFN54224.1| hypothetical protein CHLNCDRAFT_3610... 209 6e-052
gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia] 208 1e-051
gi|198430459|ref|XP_002120172.1| PREDICTED: similar to DNA direc... 207 2e-051
gi|221102923|ref|XP_002157143.1| PREDICTED: similar to DNA direc... 206 5e-051
gi|321461059|gb|EFX72094.1| hypothetical protein DAPPUDRAFT_3085... 206 5e-051
gi|260787962|ref|XP_002589020.1| hypothetical protein BRAFLDRAFT... 203 2e-050
gi|17510349|ref|NP_491093.1| RNA Polymerase II (B) subunit famil... 201 9e-050
>gi|297796859|ref|XP_002866314.1| DNA-directed RNA polymerase II [Arabidopsis
lyrata subsp. lyrata]
Length = 176
Score = 353 bits (904), Expect = 3e-095
Identities = 173/176 (98%), Positives = 175/176 (99%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIES+GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESIGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT FVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 176
>gi|15237831|ref|NP_200726.1| DNA-directed RNA polymerase II subunit RPB7
[Arabidopsis thaliana]
Length = 176
Score = 347 bits (889), Expect = 1e-093
Identities = 169/176 (96%), Positives = 174/176 (98%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPRFFGRNL+ENLVSKLMKDVEGTCSGRHGFVVAITGI+++GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT FVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDAT IFCVGTIKDDFLGVINDPAAA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176
>gi|255558950|ref|XP_002520498.1| DNA-directed RNA polymerase II 19 kD
polypeptide rpb7, putative [Ricinus communis]
Length = 176
Score = 341 bits (874), Expect = 8e-092
Identities = 166/176 (94%), Positives = 172/176 (97%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPR+FGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT FVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
+GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDATEIFC+GTIKDDFLGVINDPA A
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPATA 176
>gi|224056563|ref|XP_002298912.1| predicted protein [Populus trichocarpa]
Length = 176
Score = 339 bits (868), Expect = 4e-091
Identities = 164/176 (93%), Positives = 171/176 (97%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPRFFGRNLREN+VSKLMKDVEGTCSGRHGFVVAITGIE++GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRFFGRNLRENIVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT FVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDATEIFC+GTIKDDFLGVINDPA A
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPANA 176
>gi|1173137|sp|P46279.1|RPB7_SOYBN RecName: Full=DNA-directed RNA polymerase II
subunit RPB7; Short=RNA polymerase II subunit B7
Length = 176
Score = 337 bits (862), Expect = 2e-090
Identities = 161/174 (92%), Positives = 171/174 (98%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIE++GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT FVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPA 593
+GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDATEIFC+GTIKDDFLGVINDPA
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174
>gi|217071674|gb|ACJ84197.1| unknown [Medicago truncatula]
Length = 176
Score = 335 bits (859), Expect = 4e-090
Identities = 160/174 (91%), Positives = 170/174 (97%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPR+FGRNLR+NLVSKLMKDVEGTCSGRHGFVVA+TGIE++GKG+IR
Sbjct: 1 MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGIIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT FVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPA 593
GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDATEIFC+GTIKDDFLGVINDPA
Sbjct: 121 TGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPA 174
>gi|225434800|ref|XP_002282298.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 176
Score = 330 bits (845), Expect = 2e-088
Identities = 159/176 (90%), Positives = 170/176 (96%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPR FGR+LR+NLV+KL+KDVEGTCSGRHGFVVAITGIE+VGKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRHFGRHLRDNLVAKLVKDVEGTCSGRHGFVVAITGIENVGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT FVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
+GDMPNYTTSDGSVKIQK+ EVRLKIIGTRVDATEIFC+GTIKDDFLGVINDP +
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPVTS 176
>gi|326496519|dbj|BAJ94721.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 236
Score = 326 bits (835), Expect = 3e-087
Identities = 157/182 (86%), Positives = 169/182 (92%)
Frame = +3
Query: 54 ERETRRMFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESV 233
E E MFFHIVLERN+QLHPR FG +LR+ LV+KLMKDVEGTCSGRHGFVVAITG+E +
Sbjct: 54 EEEEEEMFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDI 113
Query: 234 GKGLIRDGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIP 413
GKGLIR+GT FVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIP
Sbjct: 114 GKGLIREGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIP 173
Query: 414 DDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPA 593
DDMEFQ+GD+PNYTTSDGSVKIQKE EVRLKIIGTRVDATEIFC+GTIKDDFLGVI+DP
Sbjct: 174 DDMEFQSGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPG 233
Query: 594 AA 599
A
Sbjct: 234 GA 235
>gi|226500588|ref|NP_001149597.1| DNA-directed RNA polymerase II 19 kDa
polypeptide [Zea mays]
Length = 177
Score = 323 bits (826), Expect = 3e-086
Identities = 155/176 (88%), Positives = 168/176 (95%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPR FG +LR+ LVSKL+KDVEGTCSGRHGFVVAITG+E +GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
+GT +VTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
+GD+PNYTTSDGSVKIQKE EVRLKIIGTRVDATEIFC+GTIKDDFLGVI+DP AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176
>gi|326497319|dbj|BAK02244.1| predicted protein [Hordeum vulgare subsp.
vulgare]
Length = 177
Score = 323 bits (826), Expect = 3e-086
Identities = 155/176 (88%), Positives = 167/176 (94%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPR FG +LR+ LV+KLMKDVEGTCSGRHGFVVAITG+E +GKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVAKLMKDVEGTCSGRHGFVVAITGVEDIGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
+GT FVTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 EGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
+GD+PNYTTSDGSVKIQKE EVRLKIIGTRVDATEIFC+GTIKDDFLGVI+DP A
Sbjct: 121 SGDVPNYTTSDGSVKIQKESEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGGA 176
>gi|115463767|ref|NP_001055483.1| Os05g0400700 [Oryza sativa Japonica Group]
Length = 177
Score = 322 bits (824), Expect = 5e-086
Identities = 155/176 (88%), Positives = 168/176 (95%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHIVLERN+QLHPR FG +LR+ LVSKL+KDVEGTCSGRHGFVVAITG+E VGKGLIR
Sbjct: 1 MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
+GT +VTFPVKYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIPDDMEFQ
Sbjct: 61 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
+GD+PNYTTSDGSVKIQK+ EVRLKIIGTRVDATEIFC+GTIKDDFLGVI+DP AA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176
>gi|302754896|ref|XP_002960872.1| hypothetical protein SELMODRAFT_75793
[Selaginella moellendorffii]
Length = 177
Score = 301 bits (770), Expect = 9e-080
Identities = 142/177 (80%), Positives = 159/177 (89%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHI LERN+QLHPRFFG LR+ LV KL+ DVEGTCSGRHGFVVA+TG++++GKGLIR
Sbjct: 1 MFFHIRLERNLQLHPRFFGPQLRDKLVEKLIHDVEGTCSGRHGFVVAVTGVDTIGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT +VTFP+ YQCVVFRPFKGEILE VVTLVNKMGFFAEAGPVQIFVS HLIPDDM FQ
Sbjct: 61 DGTGYVTFPIHYQCVVFRPFKGEILEGVVTLVNKMGFFAEAGPVQIFVSNHLIPDDMSFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAAA 602
+GD+P Y TSD SV+IQK+ EVRLKI+GTRVDATEIFC+GTIKDDFLG+I DP A A
Sbjct: 121 SGDVPCYETSDSSVRIQKDSEVRLKIVGTRVDATEIFCIGTIKDDFLGLIGDPTAGA 177
>gi|168056096|ref|XP_001780058.1| predicted protein [Physcomitrella patens
subsp. patens]
Length = 177
Score = 301 bits (769), Expect = 1e-079
Identities = 140/176 (79%), Positives = 161/176 (91%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MFFHI L+RN+QLHPR FG +LR+ L++KL++DVEGTCSGRHGFVVA+T +E++G GLIR
Sbjct: 1 MFFHIYLDRNLQLHPRHFGPHLRDKLIAKLIQDVEGTCSGRHGFVVAVTAVETIGSGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
DGT FVTFPVKYQCVVFRPFKGEILE+VVT+VNKMGFFAEAGPVQIFVS HLIPDDM FQ
Sbjct: 61 DGTGFVTFPVKYQCVVFRPFKGEILESVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMAFQ 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDPAAA 599
+ D+PNY TSDGSV+IQK+ EVRLKI+GTRVDATEIFC+GTIKDDFLG+I DP A
Sbjct: 121 SDDVPNYKTSDGSVRIQKDSEVRLKIVGTRVDATEIFCIGTIKDDFLGLIGDPGGA 176
>gi|307105977|gb|EFN54224.1| hypothetical protein CHLNCDRAFT_36106 [Chlorella
variabilis]
Length = 174
Score = 209 bits (530), Expect = 6e-052
Identities = 93/173 (53%), Positives = 132/173 (76%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MF+ I L + +++HPRFFG LRE + +L ++VEGTC+GR+GF++++ G+ GKGLIR
Sbjct: 1 MFYLIELYKELEVHPRFFGPKLREEIERRLRQEVEGTCNGRYGFILSVMGVLDTGKGLIR 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
+G+ F +KY+C+ +PFKG++++ VVT VNKMGFFAEAGP+Q+FVS HLIP+ EF
Sbjct: 61 EGSGSAVFNLKYKCICMKPFKGQVMDVVVTSVNKMGFFAEAGPLQVFVSNHLIPEGFEFN 120
Query: 432 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVINDP 590
P Y T+DG KI EVRL+I+GTRVDA++IF VG+IK+D+LGV++ P
Sbjct: 121 TAHEPCYQTADGEQKIVPGSEVRLRIVGTRVDASDIFAVGSIKEDYLGVVSAP 173
>gi|111140005|gb|ABH06364.1| RNA polymerase II [Sorbus aucuparia]
Length = 110
Score = 208 bits (527), Expect = 1e-051
Identities = 99/110 (90%), Positives = 107/110 (97%)
Frame = +3
Query: 84 IVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIRDGTA 263
IVLERN+QLHPR FGRNLRENLVSKLMKDVEGTCSG+HGFVVAITGIE++GKG+IRDGT
Sbjct: 1 IVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGQHGFVVAITGIENIGKGMIRDGTG 60
Query: 264 FVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIP 413
FV+FP+KYQCVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQIFVS HLIP
Sbjct: 61 FVSFPMKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIP 110
>gi|198430459|ref|XP_002120172.1| PREDICTED: similar to DNA directed RNA
polymerase II polypeptide G [Ciona intestinalis]
Length = 172
Score = 207 bits (525), Expect = 2e-051
Identities = 94/172 (54%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MF+HI LE + LHPR+FG NL E + KL +VEGTC+G+HGFV+A+T I+++G GLI+
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLETVKQKLFTEVEGTCTGKHGFVIAVTTIDNIGDGLIQ 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
G FV +P+KY+ +VFRPFKGE+++AVVT VNK+G F E GP+ F+S+H IP DM+F
Sbjct: 61 PGRGFVLYPIKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPADMKFD 120
Query: 432 -AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVIN 584
P Y T D V IQ++ E+RLKI+GTRVDA +IF +G++ DD+LG+I+
Sbjct: 121 PESHPPCYKTDDEDVVIQQDDEIRLKIVGTRVDANDIFAIGSLMDDYLGLIS 172
>gi|221102923|ref|XP_002157143.1| PREDICTED: similar to DNA directed RNA
polymerase II polypeptide G [Hydra magnipapillata]
Length = 172
Score = 206 bits (522), Expect = 5e-051
Identities = 94/172 (54%), Positives = 127/172 (73%), Gaps = 1/172 (0%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MF+HI LE + LHPR+FG NL + + KL +VEGTC+G++GFV+A+T I+++G G I+
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLQTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGYIQ 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
FV +PVKY+ +VFRPFKGE+L+AVVT VNK G F E GP+ F+S+H IP DMEF
Sbjct: 61 PSRGFVVYPVKYKAIVFRPFKGEVLDAVVTQVNKAGLFTEVGPLSCFISRHSIPTDMEFD 120
Query: 432 AGDMPN-YTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVIN 584
P Y T D V IQ++ E+RLKI+GTRVDA +IF +GT+ DDFLG+++
Sbjct: 121 PNSSPPCYKTHDEEVVIQQDDEIRLKIVGTRVDANDIFAIGTLMDDFLGLVS 172
>gi|321461059|gb|EFX72094.1| hypothetical protein DAPPUDRAFT_308561 [Daphnia
pulex]
Length = 172
Score = 206 bits (522), Expect = 5e-051
Identities = 91/172 (52%), Positives = 129/172 (75%), Gaps = 1/172 (0%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MF+HI LE + LHPR+FG L E + KL +VEGTC+G++GFV+A+T I+++G G+I+
Sbjct: 1 MFYHIALEHEILLHPRYFGPQLMETVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGIIQ 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
G FV +PVKY+ +VFRPFKG++L+AVVT VNK+G F E GP+ F+S+H IP DM+F
Sbjct: 61 PGQGFVVYPVKYKAIVFRPFKGQVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSDMQFD 120
Query: 432 AGDMPN-YTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVIN 584
P Y T D V IQ++ E+R+KI+G RVDAT+IF +GT+ DD+LG+++
Sbjct: 121 PNSTPPCYKTQDEDVVIQQDDEIRIKIVGLRVDATDIFAIGTLMDDYLGLVS 172
>gi|260787962|ref|XP_002589020.1| hypothetical protein BRAFLDRAFT_124918
[Branchiostoma floridae]
Length = 172
Score = 203 bits (516), Expect = 2e-050
Identities = 91/172 (52%), Positives = 130/172 (75%), Gaps = 1/172 (0%)
Frame = +3
Query: 72 MFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKGLIR 251
MF+HI LE + LHPR+FG NL + KL +VEGTC+G++GFV+A+T I+++G G I+
Sbjct: 1 MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGVGAIQ 60
Query: 252 DGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 431
G FV +PVKY+ +VFRPFKGE+++AVVT VNK+G F E GP+ FVS+H IP DMEF
Sbjct: 61 PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEVGPMSCFVSRHSIPSDMEFD 120
Query: 432 A-GDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGVIN 584
+ P Y T+D V IQ++ E+R+KI+GTR+DA +IF +G++ DD+LG+++
Sbjct: 121 PNSNPPCYKTADEDVVIQQDDEIRIKIVGTRIDANDIFAIGSLMDDYLGLVS 172
>gi|17510349|ref|NP_491093.1| RNA Polymerase II (B) subunit family member
(rpb-7) [Caenorhabditis elegans]
Length = 197
Score = 201 bits (511), Expect = 9e-050
Identities = 90/173 (52%), Positives = 130/173 (75%), Gaps = 1/173 (0%)
Frame = +3
Query: 63 TRRMFFHIVLERNVQLHPRFFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIESVGKG 242
T RMFFH+ L+ V LHP++FG NL E + KL +VEGTC+G++GFV+A+T I+++G G
Sbjct: 21 TLRMFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGTCTGKYGFVIAVTTIDTIGHG 80
Query: 243 LIRDGTAFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDM 422
LI+ G FV +PV+Y+ +VFRPFKG++++ VVT VNK+G F + GP+ F+S+H IP DM
Sbjct: 81 LIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGIFCDIGPLSCFISRHCIPPDM 140
Query: 423 EFQA-GDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATEIFCVGTIKDDFLGV 578
EF + P Y T+D + I+ + E+R+K+IGTRVDA +IF +GT+ DDFLG+
Sbjct: 141 EFDPNSEKPCYKTNDEANVIRNDDEIRVKLIGTRVDANDIFAIGTLMDDFLGL 193
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,774,473,030,928
Number of Sequences: 15229318
Number of Extensions: 1774473030928
Number of Successful Extensions: 444405353
Number of sequences better than 0.0: 0
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