BLASTX 7.6.2
Query= UN16244 /QuerySize=2015
(2014 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G34750.1 | Symbols: | RNA polymerase I specif... 574 1e-163
TAIR9_protein||AT1G30590.1 | Symbols: | RNA polymerase I specif... 503 2e-142
TAIR9_protein||AT2G39240.1 | Symbols: | RNA polymerase I transc... 379 4e-105
>TAIR9_protein||AT2G34750.1 | Symbols: | RNA polymerase I specific
transcription initiation factor RRN3 family protein |
chr2:14660449-14663792 REVERSE
Length = 614
Score = 574 bits (1477), Expect = 1e-163
Identities = 286/353 (81%), Positives = 312/353 (88%), Gaps = 4/353 (1%)
Frame = -3
Query: 1376 QDQVVVTYVENLLKLESSSIGQVGGNMIFMMVMERLRDLDLEIDWDDIPQDDSSRGMFDM 1197
+D +V YVE+LLKLE+SSIGQVGG+MI MVMERLRDLDLEI+WDDIPQDDSSRGMFDM
Sbjct: 198 KDHSIVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDSSRGMFDM 257
Query: 1196 ELEDG----MNEGDELPAGSVNQDTSSGKIAFESLDKLMVTSFDHLESCQDAGRLDQVFE 1029
ELED MN+GDELP G + QDTS G I + LDKLMV +F+HLESCQ+ GRLDQVFE
Sbjct: 258 ELEDAAEGTMNDGDELPVGPLKQDTSDGSIVSKLLDKLMVVAFEHLESCQNDGRLDQVFE 317
Query: 1028 KLFESFENFILNTYKSKVSQFLMFYACSLDPENCGVKFGSKLLDIFLSSNKPRPTRMSAV 849
LF+SFENFILNTYKSK +QFL+FYACSLDPENCGVKF SKL++IFLSSNK TRMSAV
Sbjct: 318 SLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGVKFASKLVEIFLSSNKHVATRMSAV 377
Query: 848 AYLASYLARGKFLPVSYVASMLKRLVDECADYCRICNDDTRPEAHQLFYSGCQAIMYVLC 669
AYLAS+LARGKFLPVS+VASMLKRL+DEC YCR CNDDTRPEAHQ+F+SGCQAIMYVLC
Sbjct: 378 AYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDTRPEAHQIFFSGCQAIMYVLC 437
Query: 668 FRMRSILDVPRFRSELIPLESILMHKLNPLMVCLPSVVAEFLKQAKAVGLFVVSDSFIFD 489
FRMRSILDVPRFRS+L PLESILMHKLNPLMVCLPSVVAEFL+QAK GLF+VSDSFIFD
Sbjct: 438 FRMRSILDVPRFRSQLTPLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFIVSDSFIFD 497
Query: 488 DLLESELSRAFGGRERLDTFFPFDPYLLKRSNSVISPNFIYWSTVMNQDDDDD 330
DLLESELSRAFGG ERLDTFFPFDP LLK SNS ISPNFIYWS V D+DD
Sbjct: 498 DLLESELSRAFGGFERLDTFFPFDPCLLKSSNSFISPNFIYWSMVKATYDEDD 550
Score = 230 bits (586), Expect = 3e-060
Identities = 121/198 (61%), Positives = 148/198 (74%), Gaps = 6/198 (3%)
Frame = -1
Query: 1954 MGAAEVFTDPSSLYD----VGNNDSCDTETVQGVRNALASAQNGESDRFDQLVETI--QI 1793
MGA E+ +DPSSL V N D DT+ VQ VR AL S + G+SD + ++V + I
Sbjct: 1 MGAVELMSDPSSLCTVENYVDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDI 60
Query: 1792 NDRSDAAAAAELNTLLKALSGSVACIDITHHQKLLSAIFGMSLWNQRPLIMDALVGLLIS 1613
+ D A+L T+LKALSG+VACID+ HHQKLLSA+F M LW+ RP +MDALV L+IS
Sbjct: 61 KEFKDPDVVAQLETVLKALSGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVIS 120
Query: 1612 LAATSGKYLDSCLHMLVRHFVPPPWVINRLSQSRVSTQKGEVLSRVHEALLEISLLVPLA 1433
LA TSGKYLDSCL+MLV +FVPPPWV+N LS SR+ +K +VLSRVH ALL+IS+LVPL
Sbjct: 121 LAVTSGKYLDSCLNMLVSNFVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLT 180
Query: 1432 PSRLFPMLSQQMPKMNKK 1379
PSRL PML QQMPKM+KK
Sbjct: 181 PSRLVPMLFQQMPKMHKK 198
Score = 104 bits (258), Expect = 3e-022
Identities = 49/64 (76%), Positives = 59/64 (92%), Gaps = 2/64 (3%)
Frame = -2
Query: 327 DDAEIIVNGDEESDEEEEEEGDLDYAMDKMSITPKHSFKNKMERDRLMKMPSMIRPSTSP 148
+DAE+IVNGDE+SD E++E DLDYA++KMSITPKHSFKNKMERDRL++MPS IRPSTSP
Sbjct: 553 NDAEVIVNGDEDSD--EDDEADLDYALNKMSITPKHSFKNKMERDRLLRMPSRIRPSTSP 610
Query: 147 QSL* 136
+SL*
Sbjct: 611 ESL* 614
>TAIR9_protein||AT1G30590.1 | Symbols: | RNA polymerase I specific
transcription initiation factor RRN3 family protein |
chr1:10835976-10839524 REVERSE
Length = 605
Score = 503 bits (1294), Expect = 2e-142
Identities = 258/366 (70%), Positives = 302/366 (82%), Gaps = 14/366 (3%)
Frame = -3
Query: 1397 AQNEQK--DQDQVVVTYVENLLKLESSSIGQVGGNMIFMMVMERLRDLDLEIDWDDIPQD 1224
AQN +K +D +VTYV+NLL+LE+SSIG+V G++I MMVMER+ DLDL D
Sbjct: 181 AQNMRKIDKKDPSIVTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDLVSGC-----D 235
Query: 1223 DSSRGMFDMELEDG----MNEGDELPAGSVNQDTSSGKIAFESLDKLMVTSFDHLESCQD 1056
DS+ GMFDMELED MNEGDE P G++ Q+TS G + E LDKLMV F HLESCQ+
Sbjct: 236 DSNGGMFDMELEDAVESTMNEGDEFPVGALKQNTSGGNVVSELLDKLMVLFFHHLESCQN 295
Query: 1055 AGRLDQVFEKLFESFENFILNTYKSKVSQFLMFYACSLDPENCGVKFGSKLLDIFLSSNK 876
+ RLD+VFE LF+SFEN+ILNTYK+K SQFLMFYACSLDPENCGV+F SKLLDI+LSSN
Sbjct: 296 SDRLDEVFEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFASKLLDIYLSSNT 355
Query: 875 PRPTRMSAVAYLASYLARGKFLPVSYVASMLKRLVDECADYCRICNDDTRPEAHQLFYSG 696
R TRMSAVAYLASYL+RGKFLP S+VASMLKRLVDECA+YC CNDD +PEAHQ+FYSG
Sbjct: 356 CRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCGTCNDDVKPEAHQVFYSG 415
Query: 695 CQAIMYVLCFRMRSILDVPRFRSELIPLESILMHKLNPLMVCLPSVVAEFLKQAKAVGLF 516
CQAI+YVLCFRMRSI+++PRF+S+ LESIL HKLNPL+VCLPSVV+EFLKQAKA GLF
Sbjct: 416 CQAILYVLCFRMRSIVEIPRFQSQFRSLESILSHKLNPLLVCLPSVVSEFLKQAKAGGLF 475
Query: 515 VVSDSFIFDDLLESELSRAFGGRERLDTFFPFDPYLLKRSNSVISPNFIYWS---TVMNQ 345
+VS+SFIFDDL ESELSRAFGG ERLDTFFPFDP LLK S+S ISPNF +WS T +
Sbjct: 476 IVSESFIFDDLHESELSRAFGGFERLDTFFPFDPCLLKMSSSYISPNFNFWSMVKTTYGE 535
Query: 344 DDDDDV 327
D D+++
Sbjct: 536 DGDEEL 541
Score = 159 bits (402), Expect = 6e-039
Identities = 95/194 (48%), Positives = 131/194 (67%), Gaps = 6/194 (3%)
Frame = -1
Query: 1954 MGAAEVFTDPSSLYDVGNNDSCDTETVQGVRNALASAQNGESDRFDQLVETIQINDRSDA 1775
MGA E + P + + N + DT+ V VR ALAS QNG++D + QL + + + +D
Sbjct: 1 MGAEEFPSVPFNSNAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADF 60
Query: 1774 AAAAELNTLLKALSGSVACIDITHHQKLLSAIFGMSLW--NQRPLIMDALVGLLISLAAT 1601
A A+L T+LK+LS SVA ID+ HH+ LL A MSLW + RP +MDALV L+ISLAAT
Sbjct: 61 DAVAQLETVLKSLSVSVAWIDLVHHKDLLEA---MSLWYHSHRPSVMDALVDLIISLAAT 117
Query: 1600 SGKYLDSCLHMLVRHFVPPPWVINRLSQSRVSTQKGEVLSRVHEALLEISLLVPLAPSRL 1421
SGKYLD CL+MLVR+F P + +++SQ+++ + EV RVH AL +IS L+PLAP L
Sbjct: 118 SGKYLDPCLNMLVRNFSQPTFK-HKVSQTQLVKKMQEVHPRVHAALHKISYLIPLAPWNL 176
Query: 1420 FPMLSQQMPKMNKK 1379
+L+Q M K++KK
Sbjct: 177 VSILAQNMRKIDKK 190
Score = 69 bits (167), Expect = 1e-011
Identities = 36/61 (59%), Positives = 45/61 (73%), Gaps = 4/61 (6%)
Frame = -2
Query: 330 CDDAEIIVNGDEESDEEEEEEGDLDYAMDKMSITPKHSFKNKMERDRLMKMPSMIRPSTS 151
CD E+IVNGD +S EE +++ +LD M+ MS TPKHSF E +RL+KMPS IRPSTS
Sbjct: 542 CD--EVIVNGDADSAEEPDDDVELDSEMNTMSTTPKHSFMR--ETERLLKMPSRIRPSTS 597
Query: 150 P 148
P
Sbjct: 598 P 598
>TAIR9_protein||AT2G39240.1 | Symbols: | RNA polymerase I transcription factor/
binding | chr2:16384786-16387827 REVERSE
Length = 574
Score = 379 bits (972), Expect = 4e-105
Identities = 196/295 (66%), Positives = 229/295 (77%), Gaps = 8/295 (2%)
Frame = -3
Query: 1202 DMELEDGMNEGDELPAGSVNQDTS-SGKIAFESLDKLMVTSFDHLESCQDAGRLDQVFEK 1026
++E +D + L + D + G + + LD LMV SF+HL+SCQDAGRLD+VFE
Sbjct: 231 EIECDDNLQNDSSLAMFDMELDVAVEGTLVSKLLDDLMVESFNHLKSCQDAGRLDEVFEN 290
Query: 1025 LFESFENFILNTYKSKVSQFLMFYACSLDPENCGVKFGSKLLDIFLSSNKPRPTRMSAVA 846
LFESFEN ILNT K K SQFLMFYACSLDPENCGVKF SKLL+ FLSSN + TR +AV
Sbjct: 291 LFESFENLILNTQKLKFSQFLMFYACSLDPENCGVKFASKLLEKFLSSNNNQVTRTNAVT 350
Query: 845 YLASYLARGKFLPVSYVASMLKRLVDECADYCRICNDDTRPEAHQLFYSGCQAIMYVLCF 666
YLASYLAR FL S+VASMLKRLVDECADYCR CNDD RPE HQ+FYSGCQAI+YVLCF
Sbjct: 351 YLASYLARANFLSASFVASMLKRLVDECADYCRTCNDDARPEVHQVFYSGCQAILYVLCF 410
Query: 665 RMRSILDVPRFRSELIPLESILMHKLNPLMVCLPSVVAEFLKQAKAVGLFVVSDSFIFDD 486
RMRSIL+VP F+S+L PLES+L HKL+PL VCL SVV+EFL QAKA GLF+VSD+FIFDD
Sbjct: 411 RMRSILEVPHFQSQLTPLESVLSHKLDPLRVCLSSVVSEFLIQAKACGLFIVSDAFIFDD 470
Query: 485 LLESELSRAFGGRERLDTFFPFDPYLLKRSNSVISPNFIYWSTVMNQDDDDDVTM 321
L ESELSRA GG FFPF P+LL++SNS+ISP+FI S V + +VT+
Sbjct: 471 LSESELSRALGG------FFPF-PWLLEKSNSLISPHFIKRSEVKKTYEQAEVTV 518
Score = 77 bits (189), Expect = 3e-014
Identities = 39/80 (48%), Positives = 50/80 (62%)
Frame = -1
Query: 1780 DAAAAAELNTLLKALSGSVACIDITHHQKLLSAIFGMSLWNQRPLIMDALVGLLISLAAT 1601
D A+ TLLK LS SVAC+D HH LL I G +W+ +P ++ AL+ L+ISLA T
Sbjct: 62 DVDVVAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYALLDLIISLATT 121
Query: 1600 SGKYLDSCLHMLVRHFVPPP 1541
SGK+L SCL LV + P
Sbjct: 122 SGKHLSSCLDTLVSNLRSQP 141
Score = 74 bits (180), Expect = 3e-013
Identities = 47/79 (59%), Positives = 55/79 (69%), Gaps = 5/79 (6%)
Frame = -3
Query: 1409 LPADAQN----EQKDQDQVVVTYVENLLKLESSS-IGQVGGNMIFMMVMERLRDLDLEID 1245
LP AQ+ K + QVVV YV+NLLKLE+SS IG+V G I MMVM R RDLD EI+
Sbjct: 174 LPILAQSMPSVHDKARLQVVVPYVKNLLKLENSSIIGKVVGKDILMMVMGRFRDLDSEIE 233
Query: 1244 WDDIPQDDSSRGMFDMELE 1188
DD Q+DSS MFDMEL+
Sbjct: 234 CDDNLQNDSSLAMFDMELD 252
Score = 64 bits (154), Expect = 3e-010
Identities = 31/61 (50%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Frame = -2
Query: 327 DDAEIIVNGDEESDEEEEEEGDLDYAMDKMSITPKHSFKNKMERDRLMKMPSMIRPSTSP 148
+ AE+ V GD +++E+ +++ D D M+KMSITPKHS + E +RL+KMPS I PSTSP
Sbjct: 512 EQAEVTVYGDTDNEEDSDDDVDPDNEMNKMSITPKHSVMH--ETERLLKMPSRISPSTSP 569
Query: 147 Q 145
+
Sbjct: 570 R 570
Score = 52 bits (124), Expect = 1e-006
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Frame = -1
Query: 1537 VINRLSQSR-VSTQKGEVLSRVHEALLEISLLVPLAPSRLFPMLSQQMPKMNKKTR 1373
V N SQ R + + EVLSRVH AL +IS LVPLAPS L P+L+Q MP ++ K R
Sbjct: 134 VSNLRSQPRKLDNKMLEVLSRVHAALHKISYLVPLAPSILLPILAQSMPSVHDKAR 189
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,509,398,703
Number of Sequences: 33410
Number of Extensions: 8509398703
Number of Successful Extensions: 303585988
Number of sequences better than 0.0: 0
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