BLASTX 7.6.2
Query= UN16249 /QuerySize=1010
(1009 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PR... 389 2e-108
TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nu... 148 9e-036
TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucle... 147 1e-035
TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucle... 147 1e-035
TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucle... 109 3e-024
>TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA
binding / nucleic acid binding / nucleotide binding |
chr2:19517229-19518686 FORWARD
Length = 251
Score = 389 bits (997), Expect = 2e-108
Identities = 195/251 (77%), Positives = 214/251 (85%), Gaps = 9/251 (3%)
Frame = -1
Query: 970 ANKAGSEVSSPNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWV 791
AN+ G SPNQTIYINNLNEKVKLDELKKSLNAVFSQ+GKI+E+LAFKT KHKGQAWV
Sbjct: 6 ANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWV 65
Query: 790 VFDNPESASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEK-GGK 614
VFDN ESAS AI+KMN FPFYDK MRIQ+AKTKSDV+AKADGTFVPREKRKRHEEK GGK
Sbjct: 66 VFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGK 125
Query: 613 KKKEQHHDNTRMPIP---PYPGVYGSAPPLSQVPYPGGGGGGGVKSNLPEAPAPPNNILF 443
KKK+QHHD+T+M +P YPGVYG+APPLSQVPYP GG+K N+PEAPAPPNNILF
Sbjct: 126 KKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYP-----GGMKPNMPEAPAPPNNILF 180
Query: 442 VQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFSDEMQSTAAMHGLEGFTIHQ 263
VQ+LPH+TTP LQ LF Y GFKEVRM+ AKPGIAFVEF+DEMQST AM GL+GF I Q
Sbjct: 181 VQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQQ 240
Query: 262 TPMHITYAKK* 230
M ITYAKK*
Sbjct: 241 NQMLITYAKK* 251
>TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nuclear
ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide
binding | chr2:12905557-12907434 REVERSE
Length = 233
Score = 148 bits (371), Expect = 9e-036
Identities = 65/119 (54%), Positives = 94/119 (78%)
Frame = -1
Query: 940 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 761
PNQ+IYI NLNE++K +ELK+SL +FSQ+G+I++V+A KT K +GQAWV F +A +
Sbjct: 8 PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGH 67
Query: 760 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNT 584
A+ +M FPFYDKPMR+Q+AK KSD +AKA+GTFVP++K+++ EEK +K+++ NT
Sbjct: 68 AVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNT 126
Score = 99 bits (245), Expect = 4e-021
Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Frame = -1
Query: 463 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFSDEMQSTAAMHGL 284
PPNNILF+Q+LPH+TT LQ LF Y GFKE+RM+ AKPGIAFVE+ D++Q++ AM L
Sbjct: 155 PPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPL 214
Query: 283 EGFTI-HQTPMHITYAKK* 230
+GF I Q PM I++AKK*
Sbjct: 215 QGFKITPQNPMVISFAKK* 233
>TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 230
Score = 147 bits (370), Expect = 1e-035
Identities = 68/125 (54%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Frame = -1
Query: 940 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 761
PNQ+IYI ++NEK+K +ELK+SL +FSQ+G++++V+A KT K +GQAWVVF +ASN
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASN 67
Query: 760 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 581
A+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H + T+
Sbjct: 68 AVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEETQ 124
Query: 580 MPIPP 566
P P
Sbjct: 125 QPSMP 129
Score = 93 bits (229), Expect = 3e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = -1
Query: 463 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFSDEMQSTAAMHGL 284
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 211
Query: 283 EGFTI-HQTPMHITYAKK* 230
+GF I Q PM +++AKK*
Sbjct: 212 QGFKITPQNPMVVSFAKK* 230
>TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 229
Score = 147 bits (370), Expect = 1e-035
Identities = 68/125 (54%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Frame = -1
Query: 940 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 761
PNQ+IYI ++NEK+K +ELK+SL +FSQ+G++++V+A KT K +GQAWVVF +ASN
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASN 67
Query: 760 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 581
A+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H + T+
Sbjct: 68 AVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEETQ 124
Query: 580 MPIPP 566
P P
Sbjct: 125 QPSMP 129
Score = 93 bits (229), Expect = 3e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = -1
Query: 463 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFSDEMQSTAAMHGL 284
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 151 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 210
Query: 283 EGFTI-HQTPMHITYAKK* 230
+GF I Q PM +++AKK*
Sbjct: 211 QGFKITPQNPMVVSFAKK* 229
>TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135982-2137533
FORWARD
Length = 201
Score = 109 bits (272), Expect = 3e-024
Identities = 50/97 (51%), Positives = 73/97 (75%), Gaps = 3/97 (3%)
Frame = -1
Query: 856 QYGKIVEVLAFKTLKHKGQAWVVFDNPESASNAISKMNGFPFYDKPMRIQFAKTKSDVIA 677
++G++++V+A KT K +GQAWVVF +ASNA+ +M FPFYDKPMRIQ+AK+KSD +
Sbjct: 7 KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66
Query: 676 KADGTFVPREKRKRHEEKGGKKKKEQHHDNTRMPIPP 566
KA+G+FVP+EK+ + EEK +K+ H + T+ P P
Sbjct: 67 KAEGSFVPKEKKMKQEEKVERKR---HAEETQQPSMP 100
Score = 93 bits (229), Expect = 3e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = -1
Query: 463 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFSDEMQSTAAMHGL 284
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 123 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 182
Query: 283 EGFTI-HQTPMHITYAKK* 230
+GF I Q PM +++AKK*
Sbjct: 183 QGFKITPQNPMVVSFAKK* 201
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,555,687,411
Number of Sequences: 33410
Number of Extensions: 8555687411
Number of Successful Extensions: 306270863
Number of sequences better than 0.0: 0
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