BLASTX 7.6.2
Query= UN16493 /QuerySize=1379
(1378 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROP... 743 8e-215
TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLA... 203 3e-052
>TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA
BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035
FORWARD
Length = 379
Score = 743 bits (1917), Expect = 8e-215
Identities = 366/379 (96%), Positives = 373/379 (98%)
Frame = +2
Query: 86 MAKMMMMQQSQPSLSLLTSSLSDFNGAKLNLQVQYKRKVQQPKGALYVSASSEKKILIMG 265
MAKMMM+QQ QPS SLLTSSLSDFNGAKL+LQVQYKRKV QPKGALYVSASSEKKILIMG
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMG 60
Query: 266 GTRFIGIFLSRLLVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 445
GTRFIG+FLSR+LVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD
Sbjct: 61 GTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 446 FVKSSLSAEGFDVVYDINGREAEEVEPIIEALPKLEQYIYCSSAGVYLKSDVLPHCEVDA 625
FVKSSLSAEGFDVVYDINGREAEEVEPI+EALPKLEQYIYCSSAGVYLKSD+LPHCE DA
Sbjct: 121 FVKSSLSAEGFDVVYDINGREAEEVEPILEALPKLEQYIYCSSAGVYLKSDILPHCEEDA 180
Query: 626 VDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNS 805
VDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNS
Sbjct: 181 VDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNS 240
Query: 806 GIQISQLGHVKDLATAFLAVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV 985
GIQISQLGHVKDLATAFL VLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV
Sbjct: 241 GIQISQLGHVKDLATAFLNVLGNEKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIV 300
Query: 986 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVDGLTDSYNLDFGRGTFRK 1165
HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLV+GLTDSYNLDFGRGTFRK
Sbjct: 301 HYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRK 360
Query: 1166 EADFTTDDMILSKKLVLQ* 1222
EADFTTDDMILSKKLVLQ*
Sbjct: 361 EADFTTDDMILSKKLVLQ* 379
>TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP
BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding |
chr3:23327006-23328620 REVERSE
Length = 407
Score = 203 bits (515), Expect = 3e-052
Identities = 133/397 (33%), Positives = 206/397 (51%), Gaps = 21/397 (5%)
Frame = +2
Query: 38 SNKTFSSVCSESEPISMAKMMMMQQSQPSLSLLTSSLSDFNGAKLNLQVQYKRKVQQPKG 217
S+KT S + + P S+ + + S SL +SS S + + L ++ R++ K
Sbjct: 12 SSKTTSPISNLLIPPSLHRFSLPSSSSSFSSLSSSSSS--SSSLLTFSLRTSRRLSPQKF 69
Query: 218 ALYVSASSEKKILIM-----GGTRFIGIFLSRLLVKEGHQVTLFTRG--KSPIAKQLPGE 376
+ S+ EKK +++ GG IG + ++ L+ GH VT+ T G S K+ P
Sbjct: 70 TVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDESSEKMKKPPFN 129
Query: 377 SDQDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPIIEALPK--L 550
+ K + G+ + V + + E FDVV D NG++ + V P+++ +
Sbjct: 130 RFSEIVSGGGKTVW--GNPAN---VANVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGV 184
Query: 551 EQYIYCSSAGVYLKSDVLPHCEVDAVDPKSRHKGKLETESLLQSKGVNWTSIRPVYIYGP 730
+Q+++ SSAG+Y ++ PH E DAV + H + E L NW S RP Y+ G
Sbjct: 185 KQFLFISSAGIYKSTEQPPHVEGDAVKADAGH---VVVEKYLAETFGNWASFRPQYMIGS 241
Query: 731 LNYNPVEEWFFHRLKAGRPIPVPNSGIQISQLGHVKDLATAFLAVLGN-EKASREIFNIS 907
N EEWFF R+ R +P+P SG+Q++ + HV+DL++ + + N E AS IFN
Sbjct: 242 GNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFNCV 301
Query: 908 GEKYVTFDGLAKACAKAGGFPEPEIVHYNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLG 1087
++ VT DG+AK CA A G EIVHY+PK KKAF FR+ HF+A AK +LG
Sbjct: 302 SDRAVTLDGMAKLCAAAAG-KTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLLG 360
Query: 1088 WKPEFDLVDGLTDSYNLDFGRGTFRKEADFTTDDMIL 1198
W+ + +L + L + + G +KE F DD IL
Sbjct: 361 WESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKIL 397
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,775,572,671
Number of Sequences: 33410
Number of Extensions: 8775572671
Number of Successful Extensions: 306414901
Number of sequences better than 0.0: 0
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