BLASTX 7.6.2
Query= UN16560 /QuerySize=643
(642 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G39550.1 | Symbols: VIM3, ORTH1 | VIM3 (VARIAN... 161 4e-040
TAIR9_protein||AT1G57800.1 | Symbols: VIM5, ORTH3 | VIM5 (VARIAN... 161 5e-040
TAIR9_protein||AT1G66040.1 | Symbols: VIM4, ORTH4 | VIM4 (VARIAN... 159 1e-039
TAIR9_protein||AT1G66050.1 | Symbols: VIM2, ORTH5 | VIM2 (VARIAN... 159 1e-039
TAIR9_protein||AT1G57820.1 | Symbols: VIM1, ORTH2 | VIM1 (VARIAN... 158 5e-039
TAIR9_protein||AT1G57820.2 | Symbols: VIM1, ORTH2 | VIM1 (VARIAN... 158 5e-039
TAIR9_protein||AT5G03710.1 | Symbols: | unknown protein | chr5:... 67 6e-012
>TAIR9_protein||AT5G39550.1 | Symbols: VIM3, ORTH1 | VIM3 (VARIANT IN
METHYLATION 3); methyl-CpG binding / methyl-CpNpG binding /
methyl-CpNpN binding / protein binding / ubiquitin-protein ligase/ zinc
ion binding | chr5:15837408-15840503 REVERSE
Length = 618
Score = 161 bits (406), Expect = 4e-040
Identities = 75/123 (60%), Positives = 92/123 (74%), Gaps = 6/123 (4%)
Frame = -2
Query: 623 KFLKEFGCQICREVMSSPVTTPCAHNFCKECLTGKFAGITQVRQRSRGGRTLRAQKNVMK 444
+ LKEF CQICREV+S PVTTPCAHNFCK CL KFAGITQ+R+RS GGR LRA+KN+M
Sbjct: 488 RLLKEFSCQICREVLSLPVTTPCAHNFCKACLEAKFAGITQLRERSNGGRKLRAKKNIMT 547
Query: 443 CPCCPNDISDFLQNPQVNRELMDVIEEVKKKKELEEREDEVKSENSAEEEEDQEEEEEEE 264
CPCC D+S+FLQNPQVNRE+M++IE KK E+E + S EEEE+ E ++
Sbjct: 548 CPCCTTDLSEFLQNPQVNREMMEIIENFKKS------EEEADASISEEEEEESEPPTKKI 601
Query: 263 EED 255
+ D
Sbjct: 602 KMD 604
>TAIR9_protein||AT1G57800.1 | Symbols: VIM5, ORTH3 | VIM5 (VARIANT IN
METHYLATION 5); protein binding / zinc ion binding |
chr1:21408747-21412283 REVERSE
Length = 661
Score = 161 bits (405), Expect = 5e-040
Identities = 74/131 (56%), Positives = 100/131 (76%), Gaps = 2/131 (1%)
Frame = -2
Query: 629 RDKFLKEFGCQICREVMSSPVTTPCAHNFCKECLTGKFAGITQVRQRSRGGRTLRAQKNV 450
R + LKEF CQIC++VM++PVTTPCAHNFCK CL KFAG VR+R GGR LR+QK+V
Sbjct: 519 RARLLKEFKCQICQKVMTNPVTTPCAHNFCKACLESKFAGTALVRERGSGGRKLRSQKSV 578
Query: 449 MKCPCCPNDISDFLQNPQVNRELMDVIEEVKKKKELEERE--DEVKSENSAEEEEDQEEE 276
MKCPCCP DI++F+QNPQVNRE+ +VIE++KK++E E + DE + ++ EEED E+
Sbjct: 579 MKCPCCPTDIAEFVQNPQVNREVAEVIEKLKKQEEEENAKSLDEGQCSGTSHEEEDDEQP 638
Query: 275 EEEEEEDEEEE 243
++ + D + E
Sbjct: 639 KKRIKLDTDAE 649
>TAIR9_protein||AT1G66040.1 | Symbols: VIM4, ORTH4 | VIM4 (VARIANT IN
METHYLATION 4); protein binding / zinc ion binding |
chr1:24583820-24586681 REVERSE
Length = 623
Score = 159 bits (402), Expect = 1e-039
Identities = 73/115 (63%), Positives = 89/115 (77%), Gaps = 3/115 (2%)
Frame = -2
Query: 623 KFLKEFGCQICREVMSSPVTTPCAHNFCKECLTGKFAGITQVRQRSRGGRTLRAQKNVMK 444
+ LKEF CQICR+V+S PVTTPCAHNFCK CL KFAGITQ+R RS G R LRA+KN+M
Sbjct: 491 RLLKEFSCQICRKVLSLPVTTPCAHNFCKACLEAKFAGITQLRDRSNGVRKLRAKKNIMT 550
Query: 443 CPCCPNDISDFLQNPQVNRELMDVIEEVKKKKELEEREDEVKSENSAEEEEDQEE 279
CPCC D+S+FLQNPQVNRE+M++IE KK EE + +S N +EEEE++ E
Sbjct: 551 CPCCTTDLSEFLQNPQVNREMMEIIENFKKS---EEEAEVAESSNISEEEEEESE 602
>TAIR9_protein||AT1G66050.1 | Symbols: VIM2, ORTH5 | VIM2 (VARIANT IN
METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion
binding | chr1:24589534-24592616 FORWARD
Length = 624
Score = 159 bits (402), Expect = 1e-039
Identities = 74/117 (63%), Positives = 89/117 (76%), Gaps = 4/117 (3%)
Frame = -2
Query: 623 KFLKEFGCQICREVMSSPVTTPCAHNFCKECLTGKFAGITQVRQRSRGGRTLRAQKNVMK 444
+ LKEF CQICR+V+S PVTTPCAHNFCK CL KFAGITQ+R RS G R LRA+KN+M
Sbjct: 491 RLLKEFSCQICRKVLSLPVTTPCAHNFCKACLEAKFAGITQLRDRSNGVRKLRAKKNIMT 550
Query: 443 CPCCPNDISDFLQNPQVNRELMDVIEEVKKKKELEEREDEVKSENSAEEEEDQEEEE 273
CPCC D+S+FLQNPQVNRE+M++IE KK +E E EV ++ EEE +EE E
Sbjct: 551 CPCCTTDLSEFLQNPQVNREMMEIIENFKKSEE----EAEVAESSNISEEEGEEESE 603
>TAIR9_protein||AT1G57820.1 | Symbols: VIM1, ORTH2 | VIM1 (VARIANT IN
METHYLATION 1); DNA binding / chromatin binding / double-stranded
methylated DNA binding / histone binding / methyl-CpG binding /
methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase
| chr1:21414342-21417902 REVERSE
Length = 646
Score = 158 bits (397), Expect = 5e-039
Identities = 74/122 (60%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
Frame = -2
Query: 629 RDKFLKEFGCQICREVMSSPVTTPCAHNFCKECLTGKFAGITQVRQRSRGGRTLRAQKNV 450
R + LKEF CQIC++V++ PVTTPCAHNFCK CL KFAG T VR+RS GGRTLR++KNV
Sbjct: 509 RARLLKEFKCQICQQVLTLPVTTPCAHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNV 568
Query: 449 MKCPCCPNDISDFLQNPQVNRELMDVIEEVKKKKE-LEEREDEVKSENSAEEEEDQEEEE 273
+ CPCCP DISDFLQNPQVNRE+ +VIE++K ++E E EDE + E S E+ E+
Sbjct: 569 LNCPCCPTDISDFLQNPQVNREVAEVIEKLKTQEEDTAELEDEDEGECSGTTPEEDSEQP 628
Query: 272 EE 267
++
Sbjct: 629 KK 630
>TAIR9_protein||AT1G57820.2 | Symbols: VIM1, ORTH2 | VIM1 (VARIANT IN
METHYLATION 1); DNA binding / chromatin binding / double-stranded
methylated DNA binding / histone binding / methyl-CpG binding /
methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase
| chr1:21414342-21417902 REVERSE
Length = 643
Score = 158 bits (397), Expect = 5e-039
Identities = 74/122 (60%), Positives = 94/122 (77%), Gaps = 1/122 (0%)
Frame = -2
Query: 629 RDKFLKEFGCQICREVMSSPVTTPCAHNFCKECLTGKFAGITQVRQRSRGGRTLRAQKNV 450
R + LKEF CQIC++V++ PVTTPCAHNFCK CL KFAG T VR+RS GGRTLR++KNV
Sbjct: 506 RARLLKEFKCQICQQVLTLPVTTPCAHNFCKACLEAKFAGKTLVRERSTGGRTLRSRKNV 565
Query: 449 MKCPCCPNDISDFLQNPQVNRELMDVIEEVKKKKE-LEEREDEVKSENSAEEEEDQEEEE 273
+ CPCCP DISDFLQNPQVNRE+ +VIE++K ++E E EDE + E S E+ E+
Sbjct: 566 LNCPCCPTDISDFLQNPQVNREVAEVIEKLKTQEEDTAELEDEDEGECSGTTPEEDSEQP 625
Query: 272 EE 267
++
Sbjct: 626 KK 627
>TAIR9_protein||AT5G03710.1 | Symbols: | unknown protein | chr5:971107-971627
FORWARD
Length = 82
Score = 67 bits (163), Expect = 6e-012
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = -2
Query: 368 EEVKKKKELEEREDEVKSENSAEEEEDQEEEEEEEEEDEEEEEEEESEVHVSEDE 204
EE ++++E EE E+E + E EEEE++EEEEEEEEE+EEEEEEEE E E+E
Sbjct: 6 EEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE 60
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,775,572,671
Number of Sequences: 33410
Number of Extensions: 8775572671
Number of Successful Extensions: 306414901
Number of sequences better than 0.0: 0
|
