BLASTX 7.6.2
Query= UN16640 /QuerySize=1178
(1177 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2... 68 1e-010
sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.0... 67 2e-010
sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=... 61 2e-008
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=... 60 4e-008
sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=... 60 4e-008
sp|P27476|NSR1_YEAST Nuclear localization sequence-binding prote... 56 5e-007
sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing prot... 55 7e-007
sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic ... 54 1e-006
sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau ... 53 4e-006
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau ... 53 4e-006
sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing prot... 53 4e-006
sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing prot... 52 6e-006
sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing prot... 52 7e-006
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660
OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1
Length = 609
Score = 68 bits (164), Expect = 1e-010
Identities = 48/190 (25%), Positives = 92/190 (48%), Gaps = 12/190 (6%)
Frame = +1
Query: 238 TRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGLVFIEMASPEDAASALQA 417
T L +N+ + + +R F + G +V + ++ + RG F+ +PEDA A +
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 418 LESYEYEGRRLKVAYAKAKKKKTYAPR--------EKPTPVPTFNLFVANLAFEARAKHL 573
+ ++ + L V A+ K ++ R E+ N++V N+ + L
Sbjct: 261 VNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEEL 320
Query: 574 KEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMADAALLEFQGKDFMGRP--IRL 747
++ F + G + ST+++ E +S G+GFV F T + A A+ F G+ F G+P + +
Sbjct: 321 RKHF-SQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAI 378
Query: 748 ARSKQFVKLQ 777
A+ K+ K+Q
Sbjct: 379 AQKKEDRKMQ 388
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe GN=SPBC1861.04c PE=2 SV=1
Length = 1014
Score = 67 bits (162), Expect = 2e-010
Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 19/214 (8%)
Frame = +1
Query: 238 TRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGLVFIEMASPEDAASALQA 417
T L N P T DI LF +GNVVDV + NR +++M P++A +ALQ
Sbjct: 666 TNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQL 725
Query: 418 LESYEYEGRRLKVAYAKAKKK-----KTYAPREKPTPVPTFNLFVANLAFEARAKHLKEF 582
+ E ++V + ++ Y RE L+V N+ F+ K ++ F
Sbjct: 726 HKKLLEEKYPIQVFISDPLRRTPRSGAVYEGRE---------LYVTNIDFKVNEKDVETF 776
Query: 583 FDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIRLARSKQ 762
F D G V S + N + G+G+V T + A+ A L GK R + + SK
Sbjct: 777 F-RDYGQVESVRIPKRFNQHK--GFGYVVMTTNQDAENA-LSAAGKQLGNRVLNVVLSKP 832
Query: 763 FVKLQAKEGLQPPDEEELSESETMTQEDEIPAPE 864
L+ K + D L++S T+ +++ P+
Sbjct: 833 RESLE-KTRVSSNDNRTLAKSFETTESNKMSTPK 865
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1
SV=1
Length = 530
Score = 61 bits (146), Expect = 2e-008
Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 8/231 (3%)
Frame = +1
Query: 136 LHLSKPRNLTSCFSATTQEPILES-SSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKHG 312
+ LS+ R+ + + P+ E + + EE + + P D+ F G
Sbjct: 118 IKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVG 177
Query: 313 NVVDVEM-SMHKKERNRGLVFIEMASPEDAASALQALESYEYEGRRLKVAYAKAKKKKTY 489
V DV M S R+RG+ ++E A+ L G + V ++A+K +
Sbjct: 178 KVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQASQAEKNRAA 236
Query: 490 APR---EKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYG 660
A +K + P L+V +L F L+ F+ G + S +++ RS GYG
Sbjct: 237 AMANNLQKGSAGP-MRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYG 294
Query: 661 FVSFKTKKMADAALLEFQGKDFMGRPIRLARSKQFVKLQAKEGLQPPDEEE 813
F++F + A AL + G + GRP+++ + + DE E
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELE 345
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1
SV=2
Length = 530
Score = 60 bits (143), Expect = 4e-008
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 8/231 (3%)
Frame = +1
Query: 136 LHLSKPRNLTSCFSATTQEPILES-SSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKHG 312
+ LS+ R+ + + P+ E + + EE + + P D+ F G
Sbjct: 118 IKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVG 177
Query: 313 NVVDVEM-SMHKKERNRGLVFIEMASPEDAASALQALESYEYEGRRLKVAYAKAKKKKTY 489
V DV M S R++G+ ++E A+ L G + V ++A+K +
Sbjct: 178 KVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAA 236
Query: 490 APR---EKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYG 660
A +K + P L+V +L F L+ F+ G + S +++ RS GYG
Sbjct: 237 AMANNLQKGSAGP-MRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYG 294
Query: 661 FVSFKTKKMADAALLEFQGKDFMGRPIRLARSKQFVKLQAKEGLQPPDEEE 813
F++F + A AL + G + GRP+++ + + DE E
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELE 345
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2
SV=1
Length = 524
Score = 60 bits (143), Expect = 4e-008
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 8/231 (3%)
Frame = +1
Query: 136 LHLSKPRNLTSCFSATTQEPILES-SSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKHG 312
+ LS+ R+ + + P+ E + + EE + + P D+ F G
Sbjct: 118 IKLSRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVG 177
Query: 313 NVVDVEM-SMHKKERNRGLVFIEMASPEDAASALQALESYEYEGRRLKVAYAKAKKKKTY 489
V DV M S R++G+ ++E A+ L G + V ++A+K +
Sbjct: 178 KVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQASQAEKNRAA 236
Query: 490 APR---EKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYG 660
A +K + P L+V +L F L+ F+ G + S +++ RS GYG
Sbjct: 237 AMANNLQKGSAGP-MRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYG 294
Query: 661 FVSFKTKKMADAALLEFQGKDFMGRPIRLARSKQFVKLQAKEGLQPPDEEE 813
F++F + A AL + G + GRP+++ + + DE E
Sbjct: 295 FITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELE 345
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein
OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1
Length = 414
Score = 56 bits (133), Expect = 5e-007
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Frame = +1
Query: 469 AKKKKTYAPREKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRS 648
+ KK+ E+P +FV L++ + LK+ F+ G V+ VI+ RS
Sbjct: 155 SNKKQKNEETEEPA-----TIFVGRLSWSIDDEWLKKEFE-HIGGVIGARVIYERGTDRS 208
Query: 649 SGYGFVSFKTKKMADAALLEFQGKDFMGRPI 741
GYG+V F+ K A+ A+ E QGK+ GRPI
Sbjct: 209 RGYGYVDFENKSYAEKAIQEMQGKEIDGRPI 239
>sp|Q7SG09|MRD1_NEUCR Multiple RNA-binding domain-containing protein 1
OS=Neurospora crassa GN=mrd-1 PE=3 SV=1
Length = 827
Score = 55 bits (132), Expect = 7e-007
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 238 TRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGLVFIEMASPEDAASALQA 417
T+L+ +N+P+ T +++R+LF +G +V + + + +RG F E ++ ++A +A +
Sbjct: 704 TKLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNS 763
Query: 418 LESYEYEGRRLKVAYAKAK---KKKTYAPREKPTPVPTFNLFVANLAFEARAK 567
L+ GRRL + +A+A+ + A EK T + + L RAK
Sbjct: 764 LKDTHILGRRLVIDFAQAEDIDPEDQIAAMEKKTRAQVNKVALQQLTGTGRAK 816
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3
Length = 744
Score = 54 bits (129), Expect = 1e-006
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = +1
Query: 238 TRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGLVFIEMASPEDAASALQA 417
T + +N+ T ED R LFEKHG++ ++ + ++RG F+ E AA A+
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVDH 288
Query: 418 LESYEYEGRRLKVAYAKAKKKK 483
L E++G++L V A+ K ++
Sbjct: 289 LNDIEFKGQKLYVGRAQKKHER 310
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo
sapiens GN=CSTF2T PE=1 SV=1
Length = 616
Score = 53 bits (125), Expect = 4e-006
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +1
Query: 526 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMADAALL 705
++FV N+ +EA + LK+ F ++ G+VVS +++ + GYGF ++ ++ A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIF-SEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 706 EFQGKDFMGRPIRL 747
G++F GR +R+
Sbjct: 76 NLNGREFSGRALRV 89
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus
musculus GN=Cstf2t PE=1 SV=2
Length = 632
Score = 53 bits (125), Expect = 4e-006
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +1
Query: 526 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMADAALL 705
++FV N+ +EA + LK+ F ++ G+VVS +++ + GYGF ++ ++ A +A+
Sbjct: 17 SVFVGNIPYEATEEQLKDIF-SEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 706 EFQGKDFMGRPIRL 747
G++F GR +R+
Sbjct: 76 NLNGREFSGRALRV 89
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1
OS=Candida albicans GN=MRD1 PE=3 SV=1
Length = 841
Score = 53 bits (125), Expect = 4e-006
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Frame = +1
Query: 205 SSSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGLVFIEMA 384
S+SS + +++I +N+P+ +T +D+ LF G + V + + RG F+E
Sbjct: 706 SASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQSARGFAFVEFN 765
Query: 385 SPEDAASALQALESYEYEGRRLKVAYAKAKKKKTYAPREKPT-----PVPTFNLFVANLA 549
++A +A+ LE GRRL + YA+ + E+ T V T NL A LA
Sbjct: 766 LMKEAETAMSQLEGVHLLGRRLVMQYAEQDPENAEVEIERMTKKVKKQVATQNLAAARLA 825
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya
gossypii GN=MRD1 PE=3 SV=1
Length = 838
Score = 52 bits (124), Expect = 6e-006
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Frame = +1
Query: 187 QEPILESSSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGL 366
Q + ++S S ++IS ++I +N+P+ +T +D+ LF G + V + + RG
Sbjct: 696 QSSLPKTSKGSKKKIS-GKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGF 754
Query: 367 VFIEMASPEDAASALQALESYEYEGRRLKVAYAK 468
F+E P +A +A+ L+ GRRL + YA+
Sbjct: 755 AFVEFLLPSEAENAMDQLQGVHLLGRRLVMQYAE 788
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1
OS=Yarrowia lipolytica GN=MRD1 PE=3 SV=1
Length = 828
Score = 52 bits (123), Expect = 7e-006
Identities = 24/90 (26%), Positives = 51/90 (56%)
Frame = +1
Query: 202 ESSSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGLVFIEM 381
+ ++ +++ ++++ +N+P+ +T +D++ LF G++ V + +RG F E
Sbjct: 691 DEETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEY 750
Query: 382 ASPEDAASALQALESYEYEGRRLKVAYAKA 471
S ++A A+ AL+ GRRL + YA+A
Sbjct: 751 VSAKEAEHAMSALQGTHLLGRRLVLQYAQA 780
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,472,851,095
Number of Sequences: 518415
Number of Extensions: 69472851095
Number of Successful Extensions: 496854919
Number of sequences better than 0.0: 0
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