BLASTX 7.6.2
Query= UN16640 /QuerySize=1178
(1177 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G09040.1 | Symbols: | RNA recognition motif (... 456 2e-128
TAIR9_protein||AT4G09040.2 | Symbols: | RNA recognition motif (... 373 1e-103
TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotei... 144 1e-034
TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotei... 80 2e-015
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 70 3e-012
TAIR9_protein||AT5G19350.1 | Symbols: | RNA-binding protein 45 ... 52 7e-007
TAIR9_protein||AT5G19350.2 | Symbols: | RNA-binding protein 45 ... 52 7e-007
TAIR9_protein||AT4G16280.2 | Symbols: FCA | FCA; RNA binding | c... 51 1e-006
TAIR9_protein||AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-b... 50 2e-006
>TAIR9_protein||AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795075-5797315 REVERSE
Length = 305
Score = 456 bits (1171), Expect = 2e-128
Identities = 242/304 (79%), Positives = 261/304 (85%), Gaps = 20/304 (6%)
Frame = +1
Query: 4 MALLRLPPISLQFLGHQSEHKTPNPGVSLTNFSLPWSTPPSLSRLHL---------SKPR 156
MALLRLP ISLQ LGH+S K PNP V+ TN SL ST PSL RLH +K R
Sbjct: 1 MALLRLPGISLQILGHKSNQKNPNPNVAFTNHSLSLST-PSLCRLHRHATFPDSIPAKSR 59
Query: 157 NLTSCFSATTQEPILESSSSSS-------EEISKTRLIAQNVPWTSTPEDIRSLFEKHGN 315
NLTS FS TTQEP+LESSSSSS EEISKTRLIAQNVPWTSTPEDIRSLFEK+G+
Sbjct: 60 NLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGS 119
Query: 316 VVDVEMSMHKKERNRGLVFIEMASPEDAASALQALESYEYEGRRLKVAYAKAKKKKTYAP 495
V+D+EMSMHKKERNRGLVFIEMASPE+AA+AL++LES EYEGRRLKV YAK KKKKTYAP
Sbjct: 120 VIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAP 179
Query: 496 REKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK 675
RE P+PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK
Sbjct: 180 RETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK 239
Query: 676 TKKMADAALLEFQGKDFMGRPIRLARSKQFVKLQAKEGLQPPD---EEELSESETMTQED 846
TKK A+AAL+EFQGKDF+GRPIRLA+SKQFVKLQAKEGLQPP+ EEE S+SETMTQE
Sbjct: 240 TKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSETMTQEH 299
Query: 847 EIPA 858
E PA
Sbjct: 300 ETPA 303
>TAIR9_protein||AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795075-5797193 REVERSE
Length = 245
Score = 373 bits (957), Expect = 1e-103
Identities = 187/213 (87%), Positives = 202/213 (94%), Gaps = 3/213 (1%)
Frame = +1
Query: 229 ISKTRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGLVFIEMASPEDAASA 408
ISKTRLIAQNVPWTSTPEDIRSLFEK+G+V+D+EMSMHKKERNRGLVFIEMASPE+AA+A
Sbjct: 31 ISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATA 90
Query: 409 LQALESYEYEGRRLKVAYAKAKKKKTYAPREKPTPVPTFNLFVANLAFEARAKHLKEFFD 588
L++LES EYEGRRLKV YAK KKKKTYAPRE P+PVPTFNLFVANLAFEARAKHLKEFFD
Sbjct: 91 LKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFD 150
Query: 589 ADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIRLARSKQFV 768
ADTGNVVSTEVIFHENPRRSSGYGFVSFKTKK A+AAL+EFQGKDF+GRPIRLA+SKQFV
Sbjct: 151 ADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFV 210
Query: 769 KLQAKEGLQPPD---EEELSESETMTQEDEIPA 858
KLQAKEGLQPP+ EEE S+SETMTQE E PA
Sbjct: 211 KLQAKEGLQPPEEEAEEEPSQSETMTQEHETPA 243
>TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative | chr2:14898341-14899590
FORWARD
Length = 309
Score = 144 bits (362), Expect = 1e-034
Identities = 91/240 (37%), Positives = 136/240 (56%), Gaps = 12/240 (5%)
Frame = +1
Query: 163 TSCFSATTQEPILESSSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMH 342
TS T+QE E + +S+ K +L N+PW+ + DI LF + G V +VE+
Sbjct: 73 TSADEETSQEEKTEETQNSN---LKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 343 KKERNRGLVFIEMASPEDAASALQALESYEYEGRRLKVAYAKAKKKKT-YAPREKPTPVP 519
K +NRG F+ MAS E+A +A+ ++++ GR + V++A+ KK T +P + P+P P
Sbjct: 130 KDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAP 189
Query: 520 ---TFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMA 690
L+V+NLA++AR+ HL+E F A N VS V+F + RSSGYGFVSF T++ A
Sbjct: 190 GDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEA 249
Query: 691 DAALLEFQGKDFMGRPIRLARSKQFVKLQAKEGLQPPDEEELSESET-MTQEDEIPAPEN 867
+ A+ + GK+ MGRPI L +F A E E + SE T ED+ + EN
Sbjct: 250 ENAITKLNGKEIMGRPITL----KFSLRSASESEDGDSVEANNASEDGDTVEDKNTSEEN 305
>TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr1:22093678-22094540
REVERSE
Length = 259
Score = 80 bits (196), Expect = 2e-015
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Frame = +1
Query: 238 TRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKE-RNRGLVFIEMASPEDAASALQ 414
T+L N+P+ + + + N VE+ ++ ++RG F+ M++ ED +
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 415 ALESYEYEGRRLKVAYAKAKKKKTYAPREKPT-PVPTFNLFVANLAFEARAKHLKEFFDA 591
L+ EY GR LKV +A K P ++P P LFV NL++ ++ L F
Sbjct: 145 NLDGTEYLGRALKVNFADKPK-----PNKEPLYPETEHKLFVGNLSWTVTSESLAGAF-R 198
Query: 592 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIR--LARSKQF 765
+ G+VV V+F + RS GYGFV + +K + AL G + GR IR LA+ K+F
Sbjct: 199 ECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKKF 258
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 70 bits (169), Expect = 3e-012
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 10/202 (4%)
Frame = +1
Query: 202 ESSSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKERNRGLVFIEM 381
E S+++++ T + +N+ +T +++++ F ++G++ + ++R F+
Sbjct: 213 EERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNF 272
Query: 382 ASPEDAASALQALESYEYEGRRLKVAYAKAKKKK--------TYAPREKPTPVPTFNLFV 537
+PEDAA A++AL +++ + V A+ K ++ + NL+V
Sbjct: 273 ENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYV 332
Query: 538 ANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMADAALLEFQG 717
NL + L+E F A+ G + S +V+ + S G GFV+F A L E G
Sbjct: 333 KNLDDTVTDEKLRELF-AEFGTITSCKVM-RDPSGTSKGSGFVAFSAASEASRVLNEMNG 390
Query: 718 KDFMGRPIRLARSKQFVKLQAK 783
K G+P+ +A +++ + +AK
Sbjct: 391 KMVGGKPLYVALAQRKEERRAK 412
>TAIR9_protein||AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45),
putative | chr5:6518978-6521295 FORWARD
Length = 426
Score = 52 bits (123), Expect = 7e-007
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Frame = +1
Query: 286 IRSLFEKHGNVVDVEMSMHK-KERNRGLVFIEMASPEDAASALQALESYEYEGRRLKVAY 462
+ S F + G +V V++ +K + G FIE S A LQ + G L
Sbjct: 40 LTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRL 99
Query: 463 AKAKKKKTYAPREKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPR 642
A ++ +K P ++FV +LA + L+E F +V +V+ +
Sbjct: 100 NWA----SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTG 155
Query: 643 RSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIRLA 750
RS GYGFV F + + A+ E G RP+R++
Sbjct: 156 RSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRIS 191
>TAIR9_protein||AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45),
putative | chr5:6518978-6521295 FORWARD
Length = 422
Score = 52 bits (123), Expect = 7e-007
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Frame = +1
Query: 286 IRSLFEKHGNVVDVEMSMHK-KERNRGLVFIEMASPEDAASALQALESYEYEGRRLKVAY 462
+ S F + G +V V++ +K + G FIE S A LQ + G L
Sbjct: 40 LTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRL 99
Query: 463 AKAKKKKTYAPREKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPR 642
A ++ +K P ++FV +LA + L+E F +V +V+ +
Sbjct: 100 NWA----SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTG 155
Query: 643 RSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIRLA 750
RS GYGFV F + + A+ E G RP+R++
Sbjct: 156 RSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRIS 191
>TAIR9_protein||AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207164-9214412 REVERSE
Length = 748
Score = 51 bits (121), Expect = 1e-006
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +1
Query: 220 SEEISKTRLIAQNVPWTSTPEDIRSLFEKHGNVVDVEMSMHKKE-RNRGLVFIEMASPED 396
S+ S +L +VP T+T E+IR FE+HGNV++V + K+ + +G F++ A+ +D
Sbjct: 114 SDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKD 173
Query: 397 AASALQALES 426
A A++AL +
Sbjct: 174 ADRAIRALHN 183
>TAIR9_protein||AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-binding protein
45A); RNA binding | chr5:22295412-22298126 FORWARD
Length = 388
Score = 50 bits (118), Expect = 2e-006
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Frame = +1
Query: 286 IRSLFEKHGNVVDVEMSMHK-KERNRGLVFIEMASPEDAASALQALESYEYEGR----RL 450
I S+F + G ++ +K ++ G FIE S A LQ RL
Sbjct: 76 IMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRL 135
Query: 451 KVAYAKAKKKKTYAPREKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFH 630
A A A +K+ T P +FV +LA E L + F G+V +V+
Sbjct: 136 NWAQAGAGEKRF------QTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLD 189
Query: 631 ENPRRSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIRL--ARSKQFVKLQ 777
RS GYGFV F + A+ E G+ RP+R+ A +K + +Q
Sbjct: 190 RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,869,690,853
Number of Sequences: 33410
Number of Extensions: 8869690853
Number of Successful Extensions: 311758351
Number of sequences better than 0.0: 0
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