BLASTX 7.6.2
Query= UN16700 /QuerySize=1272
(1271 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G11250.1 | Symbols: | 60S acidic ribosomal pr... 565 2e-161
TAIR9_protein||AT3G09200.1 | Symbols: | 60S acidic ribosomal pr... 562 2e-160
TAIR9_protein||AT2G40010.1 | Symbols: | 60S acidic ribosomal pr... 507 8e-144
TAIR9_protein||AT3G09200.2 | Symbols: | 60S acidic ribosomal pr... 448 3e-126
>TAIR9_protein||AT3G11250.1 | Symbols: | 60S acidic ribosomal protein P0
(RPP0C) | chr3:3521453-3522826 FORWARD
Length = 324
Score = 565 bits (1456), Expect = 2e-161
Identities = 299/327 (91%), Positives = 311/327 (95%), Gaps = 6/327 (1%)
Frame = +2
Query: 98 MVKATKAEKKIAYDAKLCQLIDEFTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 277
MVKATKAEKKIAYD KLCQLIDE+TQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 278 MKRSVKIHAENTGNTGILNLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 457
MKRSV+IH+EN+GNT ILNL+PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 458 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 637
IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 638 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDDLVQKFAAGICMVTSLALAISYPTLAAAP 817
GIRPFSYGLVVQSVYDNGSVFSPEVLDLTED LV+KFA+GI MVTSLALA+SYPTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240
Query: 818 HMFINAYKNALAISVATEYTFPQAEKVKEFLKDPSKFAVAVAAVSADAGGG-ASAG-AAK 991
HMFINAYKNALAI+VAT+YTFPQAEKVKEFLKDPSKF VA AAVSADAGGG A AG AAK
Sbjct: 241 HMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAAAK 300
Query: 992 VEEKKEVVEESDEEDY-GGFDMFGDE* 1069
VEEKK EESDEEDY GGF +F +E*
Sbjct: 301 VEEKK---EESDEEDYEGGFGLFDEE* 324
>TAIR9_protein||AT3G09200.1 | Symbols: | 60S acidic ribosomal protein P0
(RPP0B) | chr3:2823364-2825020 REVERSE
Length = 321
Score = 562 bits (1448), Expect = 2e-160
Identities = 299/322 (92%), Positives = 309/322 (95%), Gaps = 7/322 (2%)
Frame = +2
Query: 98 MVKATKAEKKIAYDAKLCQLIDEFTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 277
MVKATKAEKKIAYD KLCQLIDE+TQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 278 MKRSVKIHAENTGNTGILNLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 457
MKRSV+IH+ENTGNT ILNL+PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 458 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 637
IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 638 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDDLVQKFAAGICMVTSLALAISYPTLAAAP 817
GIRPFSYGLVVQSVYDNGSVFSPEVLDLTED LV+KFA+GI MVTSLALA+SYPTLAAAP
Sbjct: 181 GIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAP 240
Query: 818 HMFINAYKNALAISVATEYTFPQAEKVKEFLKDPSKFAVA-VAAVSADAGGGASAGAAKV 994
HMFINAYKNALAI+VATEYTFPQAEKVKE+LKDPSKFAVA VAAVSADAGGGA A AAKV
Sbjct: 241 HMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPA-AAKV 299
Query: 995 EEKKEVVEESDEEDYGG-FDMF 1057
EEK EESDEEDYGG F +F
Sbjct: 300 EEK----EESDEEDYGGDFGLF 317
>TAIR9_protein||AT2G40010.1 | Symbols: | 60S acidic ribosomal protein P0
(RPP0A) | chr2:16708578-16710448 REVERSE
Length = 318
Score = 507 bits (1304), Expect = 8e-144
Identities = 263/310 (84%), Positives = 290/310 (93%), Gaps = 5/310 (1%)
Frame = +2
Query: 101 VKATKAEKKIAYDAKLCQLIDEFTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 280
VKATKAEKKI YD+KLCQL++E++QILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM
Sbjct: 3 VKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 62
Query: 281 KRSVKIHAENTGNTGILNLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI 460
KRSV+IHA+ TGN L+L+PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI
Sbjct: 63 KRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI 122
Query: 461 DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLG 640
DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALLAKLG
Sbjct: 123 DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 182
Query: 641 IRPFSYGLVVQSVYDNGSVFSPEVLDLTEDDLVQKFAAGICMVTSLALAISYPTLAAAPH 820
IRPFSYGLVV+SVYDNGSVF+PEVL+LTEDDLV+KFAAG+ M+T+L+LAISYPT+AAAPH
Sbjct: 183 IRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPH 242
Query: 821 MFINAYKNALAISVATEYTFPQAEKVKEFLKDPSKFAVAVAA-VSADAGGGASAGAAKVE 997
MF+NAYKN LA+++ATEY+FPQAE VKEFLKDP+KFAVAVAA VS ++GG A A VE
Sbjct: 243 MFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVAAPVSGESGGAVVAVA--VE 300
Query: 998 EKKEVVEESD 1027
E E EESD
Sbjct: 301 E--EAAEESD 308
>TAIR9_protein||AT3G09200.2 | Symbols: | 60S acidic ribosomal protein P0
(RPP0B) | chr3:2823364-2825020 REVERSE
Length = 288
Score = 448 bits (1152), Expect = 3e-126
Identities = 239/263 (90%), Positives = 250/263 (95%), Gaps = 7/263 (2%)
Frame = +2
Query: 275 MMKRSVKIHAENTGNTGILNLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 454
++ RSV+IH+ENTGNT ILNL+PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA
Sbjct: 27 ILVRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 86
Query: 455 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 634
PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK
Sbjct: 87 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 146
Query: 635 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDDLVQKFAAGICMVTSLALAISYPTLAAA 814
LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTED LV+KFA+GI MVTSLALA+SYPTLAAA
Sbjct: 147 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAA 206
Query: 815 PHMFINAYKNALAISVATEYTFPQAEKVKEFLKDPSKFAVA-VAAVSADAGGGASAGAAK 991
PHMFINAYKNALAI+VATEYTFPQAEKVKE+LKDPSKFAVA VAAVSADAGGGA A AAK
Sbjct: 207 PHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPA-AAK 265
Query: 992 VEEKKEVVEESDEEDYGG-FDMF 1057
VEEK EESDEEDYGG F +F
Sbjct: 266 VEEK----EESDEEDYGGDFGLF 284
Score = 66 bits (160), Expect = 4e-011
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Frame = +2
Query: 98 MVKATKAEKKIAYDAKLCQLIDEFTQILV----VAADNVGSTQLQNIRKGLRGDSVVLMG 265
MVKATKAEKKIAYD KLCQLIDE+TQILV + ++N G+T + N+ L+G+ ++
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVRSVRIHSENTGNTAILNLLPLLQGNVGLIFT 60
Query: 266 KNTMMKRSVKIHAENTG 316
K + + S ++ G
Sbjct: 61 KGDLKEVSEEVAKYKVG 77
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,869,690,853
Number of Sequences: 33410
Number of Extensions: 8869690853
Number of Successful Extensions: 311758351
Number of sequences better than 0.0: 0
|
