Library    |     Search    |     Batch query    |     SNP    |     SSR  

SwissProt blast output of UN16727


BLASTX 7.6.2

Query= UN16727 /QuerySize=886
        (885 letters)

Database: UniProt/SwissProt;
          518,415 sequences; 182,829,261 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

sp|Q8VY91|RR6_ARATH 30S ribosomal protein S6 alpha, chloroplasti...    354   5e-097
sp|P82403|RR6_SPIOL 30S ribosomal protein S6 alpha, chloroplasti...    255   3e-067
sp|Q8R6M1|RS6_THETN 30S ribosomal protein S6 OS=Thermoanaerobact...     52   6e-006

>sp|Q8VY91|RR6_ARATH 30S ribosomal protein S6 alpha, chloroplastic
        OS=Arabidopsis thaliana GN=RPS6 PE=1 SV=1

          Length = 207

 Score =  354 bits (908), Expect = 5e-097
 Identities = 182/209 (87%), Positives = 192/209 (91%), Gaps = 6/209 (2%)
 Frame = -1

Query: 834 LASSVCLSNSPVCTHSLPNASTQPLLSFSRSLRPFVSKSKPF-ASQQKKRESSVVVKSQA 658
           +ASS+C+SNS +C   LPN S+QPLLSFS SLRPF+SKSKP  AS QK+  S  VVKSQA
Sbjct:   1 MASSLCVSNSTIC--PLPNVSSQPLLSFSHSLRPFISKSKPMCASIQKRDGSQFVVKSQA 58

Query: 657 LDFSGTFFEGGFGSDDDPSSPS---VSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDER 487
           LDFSGTFFEGGFGSDDDP+SPS   VSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDER
Sbjct:  59 LDFSGTFFEGGFGSDDDPTSPSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDER 118

Query: 486 LGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPE 307
           LGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPE
Sbjct: 119 LGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPE 178

Query: 306 SITPLESVLTADDDVIRSSSFKIKKRKYN 220
           SI PLE+VLTADDD+IRSSSFKIKKRKYN
Sbjct: 179 SIVPLETVLTADDDIIRSSSFKIKKRKYN 207

>sp|P82403|RR6_SPIOL 30S ribosomal protein S6 alpha, chloroplastic (Fragment)
        OS=Spinacia oleracea GN=RPS6 PE=1 SV=2

          Length = 168

 Score =  255 bits (651), Expect = 3e-067
 Identities = 125/152 (82%), Positives = 137/152 (90%), Gaps = 2/152 (1%)
 Frame = -1

Query: 672 VKSQALDFSGTFFEGGFG--SDDDPSSPSVSTALEDKPEPQCPPGLRQYETMAVLRPDMS 499
           VK+ ALDFSG+FFEGGFG   +D PS+P    A+E+KPEPQCPPGLRQYETMAVLRPDM+
Sbjct:  17 VKAIALDFSGSFFEGGFGGLDEDPPSTPPAGLAVEEKPEPQCPPGLRQYETMAVLRPDMT 76

Query: 498 EDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYF 319
           EDERL LTQKYEELLVAGG MYVEVFNRGVIPLAYSI++KNKAGETN YLDGIYLLFTYF
Sbjct:  77 EDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYF 136

Query: 318 TKPESITPLESVLTADDDVIRSSSFKIKKRKY 223
           TKPESI+PLE+ L  DDDVIRSSSFKI+KRKY
Sbjct: 137 TKPESISPLEAALVTDDDVIRSSSFKIRKRKY 168

>sp|Q8R6M1|RS6_THETN 30S ribosomal protein S6 OS=Thermoanaerobacter
        tengcongensis GN=rpsF PE=3 SV=1

          Length = 95

 Score =  52 bits (122), Expect = 6e-006
 Identities = 25/57 (43%), Positives = 37/57 (64%)
 Frame = -1

Query: 543 LRQYETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNK 373
           +R YETM VL PD++E+ER GL ++++ L+V  GG        G   LAY I+KK++
Sbjct:   1 MRSYETMYVLSPDLNEEERKGLIERFKNLIVERGGEITNFDEWGKRKLAYPIQKKSE 57

  Database: UniProt/SwissProt
    Posted date:  Sat Aug 07 14:36:18 2010
  Number of letters in database: 182,829,261
  Number of sequences in database:  518,415

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,472,851,095
Number of Sequences: 518415
Number of Extensions: 69472851095
Number of Successful Extensions: 496854919
Number of sequences better than 0.0: 0