BLASTX 7.6.2
Query= UN17066 /QuerySize=1334
(1333 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297846376|ref|XP_002891069.1| ATUPF3/UPF3 [Arabidopsis lyrata... 359 8e-097
gi|30692963|ref|NP_174660.2| Smg-4/UPF3-like protein [Arabidopsi... 352 1e-094
gi|186488168|ref|NP_001117406.1| Smg-4/UPF3-like protein [Arabid... 352 1e-094
gi|10086477|gb|AAG12537.1|AC015446_18 Unknown protein [Arabidops... 295 1e-077
gi|39545659|emb|CAE03133.3| OJ000114_01.14 [Oryza sativa Japonic... 60 6e-007
gi|89274201|gb|ABD65605.1| hypothetical protein 23.t00001 [Brass... 60 8e-007
gi|255570968|ref|XP_002526435.1| conserved hypothetical protein ... 58 3e-006
>gi|297846376|ref|XP_002891069.1| ATUPF3/UPF3 [Arabidopsis lyrata subsp.
lyrata]
Length = 486
Score = 359 bits (920), Expect = 8e-097
Identities = 194/276 (70%), Positives = 213/276 (77%), Gaps = 17/276 (6%)
Frame = -3
Query: 1328 KYVEKDNSKGVGSSKQDYNQANSSGKDIPATETASVMDSSLPGIALTMDSGKKKILLLK- 1152
K V + + V SSK DY Q+NSSG + TA V+DSSLPGIALTMDSGKKKILLLK
Sbjct: 215 KNVPRKTTADVSSSKPDYRQSNSSGNETGNKSTAPVIDSSLPGIALTMDSGKKKILLLKS 274
Query: 1151 KDRDNPVSTPPQQEQQMEANHSGISSTSRQNQKIDVGGRLIKGILRRNETRPSQASSFVQ 972
KDRDN + PPQ EQ +E SG S+ SRQNQK DVGGRLIKGIL ++++RPSQ+S+FVQ
Sbjct: 275 KDRDNSDNPPPQPEQHIETILSGNSTASRQNQKSDVGGRLIKGILMKSDSRPSQSSTFVQ 334
Query: 971 PEERVEPTEAENSKRPPRPANTRAGKDYHVSATNSEKPERRARNKDRPDRVVWAPRRADG 792
PE+RVEP+EAEN KRPPRPANTRAGKDYH S T SEK ERR RNKDRPDRVVWAP R DG
Sbjct: 335 PEQRVEPSEAENYKRPPRPANTRAGKDYHASGTISEKQERRTRNKDRPDRVVWAPLRRDG 394
Query: 791 SNISEDQPTSSAANN------------GEVVNSSGGHTLENGSARHSSRRSGARNRKEDG 648
SNISEDQP SSA NN GEVVNSSGGHTLENGSARHSSRR G RNRKE+
Sbjct: 395 SNISEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEE- 453
Query: 647 FALTIEGKTSRRGGGGGGGPSSHEKQKWIQKSSSGT 540
+T EGKTSRR GGGGGP+S EKQ WIQK S GT
Sbjct: 454 -LMTGEGKTSRR--GGGGGPNSQEKQMWIQKPSLGT 486
Score = 102 bits (253), Expect = 2e-019
Identities = 67/153 (43%), Positives = 86/153 (56%), Gaps = 13/153 (8%)
Frame = -3
Query: 998 PSQASSFVQPEERVEPTEAENSKRPPRPANTRAGKDYHVSATNSEKPER---RARNKDRP 828
PS+A ++ +P P A A+ + N ++P+R +D
Sbjct: 341 PSEAENYKRP-----PRPANTRAGKDYHASGTISEKQERRTRNKDRPDRVVWAPLRRDGS 395
Query: 827 DRVVWAPRRADGSNISEDQPTSSAANNGEVVNSSGGHTLENGSARHSSRRSGARNRKEDG 648
+ P + G+N E + + +GEVVNSSGGHTLENGSARHSSRR G RNRKE+
Sbjct: 396 NISEDQPLSSAGNN-GEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEE- 453
Query: 647 FALTIEGKTSRRGGGGGGGPSSHEKQKWIQKSS 549
+T EGKTSRR GGGGGP+S EKQ WIQK S
Sbjct: 454 -LMTGEGKTSRR--GGGGGPNSQEKQMWIQKPS 483
>gi|30692963|ref|NP_174660.2| Smg-4/UPF3-like protein [Arabidopsis thaliana]
Length = 482
Score = 352 bits (902), Expect = 1e-094
Identities = 192/276 (69%), Positives = 214/276 (77%), Gaps = 21/276 (7%)
Frame = -3
Query: 1328 KYVEKDNSKGVGSSKQDYNQANSSGKDIPATETASVMDSSLPGIALTMDSGKKKILLLK- 1152
K V + + V SSK DY Q+NSSGK++P ETA+++DSS PGIALTMDSGKKKILLL+
Sbjct: 215 KNVPRKTTADVSSSKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRS 274
Query: 1151 KDRDNPVSTPPQQEQQMEANHSGISSTSRQNQKIDVGGRLIKGILRRNETRPSQASSFVQ 972
KDRDNP + PPQ EQ ++ N S S+ SRQNQK DVGGRLIKGIL RN++RPSQ+S+FVQ
Sbjct: 275 KDRDNPDNPPPQPEQHIDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQ 334
Query: 971 PEERVEPTEAENSKRPPRPANTRAGKDYHVSATNSEKPERRARNKDRPDRVVWAPRRADG 792
E+RVEP+EAEN KRP RPANTRAGKDYH S T SEK ERR RNKDRPDRV+WAPRR DG
Sbjct: 335 SEQRVEPSEAENYKRPSRPANTRAGKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR-DG 393
Query: 791 SNISEDQPTSSAANN------------GEVVNSSGGHTLENGSARHSSRRSGARNRKEDG 648
SEDQP SSA NN GEVVNSSGGHTLENGSARHSSRR G RNRKE+
Sbjct: 394 ---SEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEE- 449
Query: 647 FALTIEGKTSRRGGGGGGGPSSHEKQKWIQKSSSGT 540
+ EGKTSRR G GGGPSSHEKQ WIQK SSGT
Sbjct: 450 -VVIGEGKTSRR--GSGGGPSSHEKQMWIQKPSSGT 482
Score = 101 bits (250), Expect = 4e-019
Identities = 61/108 (56%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -3
Query: 872 NSEKPERRARNKDRPDRVVWAPRRADGSNISEDQPTSSAANNGEVVNSSGGHTLENGSAR 693
N ++P+ R R D P + G+N E + + +GEVVNSSGGHTLENGSAR
Sbjct: 378 NKDRPD-RVMWAPRRDGSEDQPLSSAGNN-GEVKDRMFSQRSGEVVNSSGGHTLENGSAR 435
Query: 692 HSSRRSGARNRKEDGFALTIEGKTSRRGGGGGGGPSSHEKQKWIQKSS 549
HSSRR G RNRKE+ + EGKTSRR G GGGPSSHEKQ WIQK S
Sbjct: 436 HSSRRVGGRNRKEE--VVIGEGKTSRR--GSGGGPSSHEKQMWIQKPS 479
>gi|186488168|ref|NP_001117406.1| Smg-4/UPF3-like protein [Arabidopsis
thaliana]
Length = 484
Score = 352 bits (902), Expect = 1e-094
Identities = 192/276 (69%), Positives = 214/276 (77%), Gaps = 21/276 (7%)
Frame = -3
Query: 1328 KYVEKDNSKGVGSSKQDYNQANSSGKDIPATETASVMDSSLPGIALTMDSGKKKILLLK- 1152
K V + + V SSK DY Q+NSSGK++P ETA+++DSS PGIALTMDSGKKKILLL+
Sbjct: 217 KNVPRKTTADVSSSKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRS 276
Query: 1151 KDRDNPVSTPPQQEQQMEANHSGISSTSRQNQKIDVGGRLIKGILRRNETRPSQASSFVQ 972
KDRDNP + PPQ EQ ++ N S S+ SRQNQK DVGGRLIKGIL RN++RPSQ+S+FVQ
Sbjct: 277 KDRDNPDNPPPQPEQHIDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQ 336
Query: 971 PEERVEPTEAENSKRPPRPANTRAGKDYHVSATNSEKPERRARNKDRPDRVVWAPRRADG 792
E+RVEP+EAEN KRP RPANTRAGKDYH S T SEK ERR RNKDRPDRV+WAPRR DG
Sbjct: 337 SEQRVEPSEAENYKRPSRPANTRAGKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR-DG 395
Query: 791 SNISEDQPTSSAANN------------GEVVNSSGGHTLENGSARHSSRRSGARNRKEDG 648
SEDQP SSA NN GEVVNSSGGHTLENGSARHSSRR G RNRKE+
Sbjct: 396 ---SEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSRRVGGRNRKEE- 451
Query: 647 FALTIEGKTSRRGGGGGGGPSSHEKQKWIQKSSSGT 540
+ EGKTSRR G GGGPSSHEKQ WIQK SSGT
Sbjct: 452 -VVIGEGKTSRR--GSGGGPSSHEKQMWIQKPSSGT 484
Score = 101 bits (250), Expect = 4e-019
Identities = 61/108 (56%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -3
Query: 872 NSEKPERRARNKDRPDRVVWAPRRADGSNISEDQPTSSAANNGEVVNSSGGHTLENGSAR 693
N ++P+ R R D P + G+N E + + +GEVVNSSGGHTLENGSAR
Sbjct: 380 NKDRPD-RVMWAPRRDGSEDQPLSSAGNN-GEVKDRMFSQRSGEVVNSSGGHTLENGSAR 437
Query: 692 HSSRRSGARNRKEDGFALTIEGKTSRRGGGGGGGPSSHEKQKWIQKSS 549
HSSRR G RNRKE+ + EGKTSRR G GGGPSSHEKQ WIQK S
Sbjct: 438 HSSRRVGGRNRKEE--VVIGEGKTSRR--GSGGGPSSHEKQMWIQKPS 481
>gi|10086477|gb|AAG12537.1|AC015446_18 Unknown protein [Arabidopsis thaliana]
Length = 525
Score = 295 bits (754), Expect = 1e-077
Identities = 171/315 (54%), Positives = 210/315 (66%), Gaps = 16/315 (5%)
Frame = -3
Query: 1328 KYVEKDNSKGVGSSKQDYNQANSSGKDIPATETASVMDSSLPGIALTMDSGKKKILLLK- 1152
K V + + V SSK DY Q+NSSGK++P ETA+++DSS PGIALTMDSGKKKILLL+
Sbjct: 217 KNVPRKTTADVSSSKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRS 276
Query: 1151 KDRDNPVSTPPQQEQQMEANHSGISSTSRQNQKIDVGGRLIKGILRRNETRPSQASSFVQ 972
KDRDNP + PPQ EQ ++ N S S+ SRQNQK DVGGRLIKGIL RN++RPSQ+S+FVQ
Sbjct: 277 KDRDNPDNPPPQPEQHIDTNLSRNSTDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQ 336
Query: 971 PEERVEPTEAENSKRPPRPANTRAGKDYHVSATNSEKPERRARNKDRPDRVVWAPRRADG 792
E+RVEP+EAEN KRP RPANTRAGKDYH S T SEK ERR RNKDRPDRV+WAPRR DG
Sbjct: 337 SEQRVEPSEAENYKRPSRPANTRAGKDYHTSGTISEKQERRTRNKDRPDRVMWAPRR-DG 395
Query: 791 SNISEDQPTSSAANNGEVVN---SSGGHTLENGSARHSSRRSGARNRKEDGFALTIEGKT 621
SEDQP SSA NNGEV + S + N S H+ AR+ + G+
Sbjct: 396 ---SEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSR-----RVGGRN 447
Query: 620 SRRGGGGGGGPSSHEKQ--KWIQKSSSGT*YIRFTYGFIYQANSNGLCPSTGIYRSESKW 447
+ G + K +++ S + I T+ Y ++S G CPS GIYRS+SKW
Sbjct: 448 RKEEVVIGEEANVDPKTIIRYLIYSLNICFMIVVTFQAKYMSHSTGFCPSMGIYRSQSKW 507
Query: 446 GVTLYQHHSWFLGTF 402
G + + +W L TF
Sbjct: 508 GSNII-NITWVLETF 521
Score = 65 bits (156), Expect = 3e-008
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Frame = -3
Query: 872 NSEKPERRARNKDRPDRVVWAPRRADGSNISEDQPTSSAANNGEVVNSSGGHTLENGSAR 693
N ++P+ R R D P + G+N E + + +GEVVNSSGGHTLENGSAR
Sbjct: 380 NKDRPD-RVMWAPRRDGSEDQPLSSAGNN-GEVKDRMFSQRSGEVVNSSGGHTLENGSAR 437
Query: 692 HSSRRSGARNRKED 651
HSSRR G RNRKE+
Sbjct: 438 HSSRRVGGRNRKEE 451
>gi|39545659|emb|CAE03133.3| OJ000114_01.14 [Oryza sativa Japonica Group]
Length = 455
Score = 60 bits (145), Expect = 6e-007
Identities = 42/105 (40%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Frame = -3
Query: 887 HVSATNSEKPERRARNKDRPDRVVWAPRRAD-----GSNISEDQPTSSAANNGE-VVNSS 726
H S SEK ER ARN+DRPDR VWAPRR D G++ S + + ++GE +
Sbjct: 338 HGSGLISEKTERHARNRDRPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQA 397
Query: 725 GGHTLENGSARHSSRRSGARNRKE-DGFALTIEGKTSRRGGGGGG 594
GH RH++RR R KE + A T +GK S+R G
Sbjct: 398 DGH-------RHANRRGPPRGLKEMEISASTSDGKPSKRASANYG 435
>gi|89274201|gb|ABD65605.1| hypothetical protein 23.t00001 [Brassica oleracea]
Length = 166
Score = 60 bits (144), Expect = 8e-007
Identities = 32/53 (60%), Positives = 36/53 (67%)
Frame = -3
Query: 1160 LLKKDRDNPVSTPPQQEQQMEANHSGISSTSRQNQKIDVGGRLIKGILRRNET 1002
++K D TP + AN SG SSTSRQNQKIDVGGRLIKGIL+R ET
Sbjct: 113 IVKVDCFEVARTPHSKRNNRWANFSGSSSTSRQNQKIDVGGRLIKGILQRTET 165
>gi|255570968|ref|XP_002526435.1| conserved hypothetical protein [Ricinus
communis]
Length = 472
Score = 58 bits (139), Expect = 3e-006
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = -3
Query: 899 GKDYHVSATNSEKPERRARNKDRPDRVVWAP-RRADGSNISEDQPTSSAANNGEVVNSSG 723
G D H + EK E+R RNKDRPDRVVW P RR+DGS S++ +SSA+ + S
Sbjct: 328 GNDLH--GFSGEKQEKRTRNKDRPDRVVWTPLRRSDGSYASDESLSSSASQSTHTGQDSS 385
Query: 722 GHTLENGSARHSSRRSG 672
L + S+ RSG
Sbjct: 386 QGNLGDIKVDSSNSRSG 402
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,992,423,490,450
Number of Sequences: 15229318
Number of Extensions: 1992423490450
Number of Successful Extensions: 533126175
Number of sequences better than 0.0: 0
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