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TAIR blast output of UN17092


BLASTX 7.6.2

Query= UN17092 /QuerySize=1404
        (1403 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLA...    718   3e-207
TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROP...    210   2e-054

>TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP
        BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding |
        chr3:23327006-23328620 REVERSE

          Length = 407

 Score =  718 bits (1852), Expect = 3e-207
 Identities = 371/408 (90%), Positives = 383/408 (93%), Gaps = 6/408 (1%)
 Frame = +3

Query:   84 MAALSSSSLFFSSKTAIPINNLTLIPTSLQRFSLPSSSSSFSSL-SSSSSASLFTTHSLK 260
            MAALSSSSLFFSSKT  PI+NL LIP SL RFSLPSSSSSFSSL SSSSS+S   T SL+
Sbjct:    1 MAALSSSSLFFSSKTTSPISNL-LIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLR 59

Query:  261 SSRRSSPQGFTVKA----EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTIMTVGEES 428
            +SRR SPQ FTVKA    EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTI+TVG+ES
Sbjct:   60 TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 119

Query:  429 SDKMKKTPFSRFSEIVSGGGKTVWGNPADVATVVGGETFDVVLDNNGKDLDTVRPVVDWA 608
            S+KMKK PF+RFSEIVSGGGKTVWGNPA+VA VVGGETFDVVLDNNGKDLDTVRPVVDWA
Sbjct:  120 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 179

Query:  609 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVGVEKYLAETFANWASFRPQYMI 788
            KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHV VEKYLAETF NWASFRPQYMI
Sbjct:  180 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMI 239

Query:  789 GSGNNKDCEEWFFDRIVRDRPVPIPGSGLQLTNISHVRDLSSMLTSAVTNPEAASCNIFN 968
            GSGNNKDCEEWFFDRIVRDR VPIPGSGLQLTNISHVRDLSSMLTSAV NPEAAS NIFN
Sbjct:  240 GSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFN 299

Query:  969 CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFPFRNMHFYAEPRAAKDIL 1148
            CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAF FRNMHFYAEPRAAKD+L
Sbjct:  300 CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLL 359

Query: 1149 GWESKTNLPEDLKERYEEYVKIGRDKKEMKFELDDKILEALKTPVAA* 1292
            GWESKTNLPEDLKER+EEYVKIGRDKKE+KFELDDKILEALKTPVAA*
Sbjct:  360 GWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA* 407

>TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA
        BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035
        FORWARD

          Length = 379

 Score =  210 bits (534), Expect = 2e-054
 Identities = 135/370 (36%), Positives = 195/370 (52%), Gaps = 21/370 (5%)
 Frame = +3

Query:  186 PSSSSSFSSLSSSSSASLFTTHSLKSSRRSSPQG--FTVKAEKKNVLIVNTNSGGHAVIG 359
            PS S   SSLS  + A L      K  +   P+G  +   + +K +LI+    GG   IG
Sbjct:   12 PSFSLLTSSLSDFNGAKLHLQVQYK-RKVHQPKGALYVSASSEKKILIM----GGTRFIG 66

Query:  360 FYFAKELLSAGHAVTIMTVGEESSDKMKKTPFSRFSEIVSGGGKTVW--GNPAD---VAT 524
             + ++ L+  GH VT+ T G+  S   K+ P     +      K +   G+  D   V +
Sbjct:   67 LFLSRILVKEGHQVTLFTRGK--SPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKS 124

Query:  525 VVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVK 704
             +  E FDVV D NG++ + V P+++      ++Q+++ SSAG+Y  ++  PH E DAV 
Sbjct:  125 SLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYIYCSSAGVYLKSDILPHCEEDAVD 182

Query:  705 ADAGHVG---VEKYLAETFANWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGL 875
              + H G    E  L     NW S RP Y+ G  N    EEWFF R+   RP+P+P SG+
Sbjct:  183 PKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGI 242

Query:  876 QLTNISHVRDLSSMLTSAVTNPEAASCNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVH 1052
            Q++ + HV+DL++   + + N E AS  IFN   ++ VT DG+AK CA A G    EIVH
Sbjct:  243 QISQLGHVKDLATAFLNVLGN-EKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVH 301

Query: 1053 YDPKAIGVDAKKAFPFRNMHFYAEPRAAKDILGWESKTNLPEDLKERYEEYVKIGRDKKE 1232
            Y+PK      KKAFPFR+ HF+A    AK +LGW+ + +L E L + Y      G  +KE
Sbjct:  302 YNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKE 361

Query: 1233 MKFELDDKIL 1262
              F  DD IL
Sbjct:  362 ADFTTDDMIL 371

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,043,379,755
Number of Sequences: 33410
Number of Extensions: 9043379755
Number of Successful Extensions: 311883418
Number of sequences better than 0.0: 0