BLASTX 7.6.2
Query= UN17092 /QuerySize=1404
(1403 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLA... 718 3e-207
TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROP... 210 2e-054
>TAIR9_protein||AT3G63140.1 | Symbols: CSP41A | CSP41A (CHLOROPLAST STEM-LOOP
BINDING PROTEIN OF 41 KDA); mRNA binding / poly(U) binding |
chr3:23327006-23328620 REVERSE
Length = 407
Score = 718 bits (1852), Expect = 3e-207
Identities = 371/408 (90%), Positives = 383/408 (93%), Gaps = 6/408 (1%)
Frame = +3
Query: 84 MAALSSSSLFFSSKTAIPINNLTLIPTSLQRFSLPSSSSSFSSL-SSSSSASLFTTHSLK 260
MAALSSSSLFFSSKT PI+NL LIP SL RFSLPSSSSSFSSL SSSSS+S T SL+
Sbjct: 1 MAALSSSSLFFSSKTTSPISNL-LIPPSLHRFSLPSSSSSFSSLSSSSSSSSSLLTFSLR 59
Query: 261 SSRRSSPQGFTVKA----EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTIMTVGEES 428
+SRR SPQ FTVKA EKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTI+TVG+ES
Sbjct: 60 TSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKELLSAGHAVTILTVGDES 119
Query: 429 SDKMKKTPFSRFSEIVSGGGKTVWGNPADVATVVGGETFDVVLDNNGKDLDTVRPVVDWA 608
S+KMKK PF+RFSEIVSGGGKTVWGNPA+VA VVGGETFDVVLDNNGKDLDTVRPVVDWA
Sbjct: 120 SEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVLDNNGKDLDTVRPVVDWA 179
Query: 609 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVGVEKYLAETFANWASFRPQYMI 788
KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHV VEKYLAETF NWASFRPQYMI
Sbjct: 180 KSSGVKQFLFISSAGIYKSTEQPPHVEGDAVKADAGHVVVEKYLAETFGNWASFRPQYMI 239
Query: 789 GSGNNKDCEEWFFDRIVRDRPVPIPGSGLQLTNISHVRDLSSMLTSAVTNPEAASCNIFN 968
GSGNNKDCEEWFFDRIVRDR VPIPGSGLQLTNISHVRDLSSMLTSAV NPEAAS NIFN
Sbjct: 240 GSGNNKDCEEWFFDRIVRDRAVPIPGSGLQLTNISHVRDLSSMLTSAVANPEAASGNIFN 299
Query: 969 CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFPFRNMHFYAEPRAAKDIL 1148
CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAF FRNMHFYAEPRAAKD+L
Sbjct: 300 CVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAIGVDAKKAFLFRNMHFYAEPRAAKDLL 359
Query: 1149 GWESKTNLPEDLKERYEEYVKIGRDKKEMKFELDDKILEALKTPVAA* 1292
GWESKTNLPEDLKER+EEYVKIGRDKKE+KFELDDKILEALKTPVAA*
Sbjct: 360 GWESKTNLPEDLKERFEEYVKIGRDKKEIKFELDDKILEALKTPVAA* 407
>TAIR9_protein||AT1G09340.1 | Symbols: CRB, CSP41B | CRB (CHLOROPLAST RNA
BINDING); binding / catalytic/ coenzyme binding | chr1:3015473-3018035
FORWARD
Length = 379
Score = 210 bits (534), Expect = 2e-054
Identities = 135/370 (36%), Positives = 195/370 (52%), Gaps = 21/370 (5%)
Frame = +3
Query: 186 PSSSSSFSSLSSSSSASLFTTHSLKSSRRSSPQG--FTVKAEKKNVLIVNTNSGGHAVIG 359
PS S SSLS + A L K + P+G + + +K +LI+ GG IG
Sbjct: 12 PSFSLLTSSLSDFNGAKLHLQVQYK-RKVHQPKGALYVSASSEKKILIM----GGTRFIG 66
Query: 360 FYFAKELLSAGHAVTIMTVGEESSDKMKKTPFSRFSEIVSGGGKTVW--GNPAD---VAT 524
+ ++ L+ GH VT+ T G+ S K+ P + K + G+ D V +
Sbjct: 67 LFLSRILVKEGHQVTLFTRGK--SPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKS 124
Query: 525 VVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTEQPPHVEGDAVK 704
+ E FDVV D NG++ + V P+++ ++Q+++ SSAG+Y ++ PH E DAV
Sbjct: 125 SLSAEGFDVVYDINGREAEEVEPILEALPK--LEQYIYCSSAGVYLKSDILPHCEEDAVD 182
Query: 705 ADAGHVG---VEKYLAETFANWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGSGL 875
+ H G E L NW S RP Y+ G N EEWFF R+ RP+P+P SG+
Sbjct: 183 PKSRHKGKLETESLLQSKGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPVPNSGI 242
Query: 876 QLTNISHVRDLSSMLTSAVTNPEAASCNIFNCVSDRAVTLDGMAKLCAAAAG-KTVEIVH 1052
Q++ + HV+DL++ + + N E AS IFN ++ VT DG+AK CA A G EIVH
Sbjct: 243 QISQLGHVKDLATAFLNVLGN-EKASREIFNISGEKYVTFDGLAKACAKAGGFPEPEIVH 301
Query: 1053 YDPKAIGVDAKKAFPFRNMHFYAEPRAAKDILGWESKTNLPEDLKERYEEYVKIGRDKKE 1232
Y+PK KKAFPFR+ HF+A AK +LGW+ + +L E L + Y G +KE
Sbjct: 302 YNPKEFDFGKKKAFPFRDQHFFASVEKAKHVLGWKPEFDLVEGLTDSYNLDFGRGTFRKE 361
Query: 1233 MKFELDDKIL 1262
F DD IL
Sbjct: 362 ADFTTDDMIL 371
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,043,379,755
Number of Sequences: 33410
Number of Extensions: 9043379755
Number of Successful Extensions: 311883418
Number of sequences better than 0.0: 0
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