BLASTX 7.6.2
Query= UN17136 /QuerySize=1008
(1007 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT... 487 6e-138
TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll... 237 9e-063
TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment bin... 210 1e-054
TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment bin... 210 1e-054
TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; ch... 209 3e-054
TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll... 128 8e-030
TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVE... 126 4e-029
TAIR9_protein||AT1G61520.1 | Symbols: LHCA3 | LHCA3; chlorophyll... 98 6e-021
TAIR9_protein||AT1G61520.2 | Symbols: LHCA3 | LHCA3; chlorophyll... 98 6e-021
TAIR9_protein||AT5G01530.1 | Symbols: | chlorophyll A-B binding... 95 5e-020
TAIR9_protein||AT1G15820.1 | Symbols: LHCB6, CP24 | LHCB6 (LIGHT... 94 1e-019
TAIR9_protein||AT5G28450.1 | Symbols: | chlorophyll A-B binding... 92 5e-019
TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll... 81 8e-016
TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll... 77 2e-014
TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll... 77 2e-014
TAIR9_protein||AT1G76570.1 | Symbols: | chlorophyll A-B binding... 75 6e-014
TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB... 71 8e-013
TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB... 71 8e-013
TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1... 71 8e-013
TAIR9_protein||AT3G08940.2 | Symbols: LHCB4.2 | LHCB4.2 (light h... 68 9e-012
>TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING
CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding |
chr3:17493622-17494773 REVERSE
Length = 252
Score = 487 bits (1252), Expect = 6e-138
Identities = 238/251 (94%), Positives = 242/251 (96%), Gaps = 2/251 (0%)
Frame = -3
Query: 945 MATVTTQASASIFRPCTSKPRFLTGSSGRLNRELSFKSIGS--KTSSFKVEAKKGEWLPG 772
MATVTT ASASIFRPCTSKPRFLTGSSGRLNR+LSF SIGS KTSSFKVEAKKGEWLPG
Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPG 60
Query: 771 LASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTKIG 592
LASP YL GSLAGDNGFDPLGLAEDPENLKWF+QAELVNGRWAMLGVAGMLLPEVFTKIG
Sbjct: 61 LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIG 120
Query: 591 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPP 412
IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP
Sbjct: 121 IINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPK 180
Query: 411 NEVGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHLSD 232
EVGYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGFV+QHNVTGKGPFENLLQHLSD
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240
Query: 231 PWHNTIVQTFS 199
PWHNTIVQTF+
Sbjct: 241 PWHNTIVQTFN 251
>TAIR9_protein||AT3G61470.1 | Symbols: LHCA2 | LHCA2; chlorophyll binding |
chr3:22745736-22747032 FORWARD
Length = 258
Score = 237 bits (604), Expect = 9e-063
Identities = 119/241 (49%), Positives = 155/241 (64%), Gaps = 9/241 (3%)
Frame = -3
Query: 894 SKPRFLTGSSGRLNRELSFKSIGSKTSSFKVEAKKGE---WLPGLASPGYLNGSLAGDNG 724
S P FL G RL ++L+ ++ +S + A + W PG P +L+GSL GD G
Sbjct: 15 SSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFG 74
Query: 723 FDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYF 544
FDPLGL+ DP++LKW +QAE+V+ RWAMLG AG+ +PE TKIGI+N P WY AG+++YF
Sbjct: 75 FDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYF 134
Query: 543 ASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF 367
+TLFV+E IL + E RRW DI PGSVN DP+F L +VGYPGG+ F+PL +
Sbjct: 135 TDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGW 194
Query: 366 -----APTLEAKEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHLSDPWHNTIVQTF 202
A E + KE+ NGRLAMLA +G QH TG GP +NL HL+DP H TI F
Sbjct: 195 GSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
Query: 201 S 199
+
Sbjct: 255 T 255
>TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 210 bits (534), Expect = 1e-054
Identities = 106/209 (50%), Positives = 146/209 (69%), Gaps = 9/209 (4%)
Frame = -3
Query: 804 VEAKKGEWLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAG 625
V ++ WLPGL P YL+G+LAGD GFDPLGL EDPE+LKW++QAELV+ R+AMLGVAG
Sbjct: 42 VAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAG 101
Query: 624 MLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 448
+L ++ GI N+P WY+AG ++ FAS+ TL V++F+L + E +R+ D +PGS
Sbjct: 102 ILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQA 161
Query: 447 QDPIF---KQYSLPPNEVGYPGG-IFNPLNFAPTLEA----KEKELANGRLAMLAFLGFV 292
++ F + +L E GYPGG + NPL A ++ K KE+ NGRLAM+A LGF
Sbjct: 162 KEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFF 221
Query: 291 IQHNVTGKGPFENLLQHLSDPWHNTIVQT 205
+Q +VT GP +NL++HLS+PWH TI+QT
Sbjct: 222 VQASVTHTGPIDNLVEHLSNPWHKTIIQT 250
>TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 210 bits (534), Expect = 1e-054
Identities = 106/209 (50%), Positives = 146/209 (69%), Gaps = 9/209 (4%)
Frame = -3
Query: 804 VEAKKGEWLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAG 625
V ++ WLPGL P YL+G+LAGD GFDPLGL EDPE+LKW++QAELV+ R+AMLGVAG
Sbjct: 42 VAVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAG 101
Query: 624 MLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 448
+L ++ GI N+P WY+AG ++ FAS+ TL V++F+L + E +R+ D +PGS
Sbjct: 102 ILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQA 161
Query: 447 QDPIF---KQYSLPPNEVGYPGG-IFNPLNFAPTLEA----KEKELANGRLAMLAFLGFV 292
++ F + +L E GYPGG + NPL A ++ K KE+ NGRLAM+A LGF
Sbjct: 162 KEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFF 221
Query: 291 IQHNVTGKGPFENLLQHLSDPWHNTIVQT 205
+Q +VT GP +NL++HLS+PWH TI+QT
Sbjct: 222 VQASVTHTGPIDNLVEHLSNPWHKTIIQT 250
>TAIR9_protein||AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | LHCA6; chlorophyll
binding | chr1:6612806-6613799 FORWARD
Length = 271
Score = 209 bits (530), Expect = 3e-054
Identities = 110/260 (42%), Positives = 152/260 (58%), Gaps = 11/260 (4%)
Frame = -3
Query: 945 MATVTTQASASIFRPCTSKPRFLTGSS--GRLNRE-LSFKSIGSKTSSF--KVEAKKGEW 781
+ + T +++ + P +P + SS GRL RE L G + SS + + W
Sbjct: 9 LTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEPLPPDRPLW 68
Query: 780 LPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFT 601
PG + P +L+GSL GD GFDPLGL DP+ LKWF QAEL++ RWAML V G+++PE
Sbjct: 69 FPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLE 128
Query: 600 KIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYS 421
++G I WYDAG +YFA S+TLFV + +L + E RRW D+ PGSV+ +P +
Sbjct: 129 RLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKV 188
Query: 420 LPPNEVGYPGGIFNPLNF------APTLEAKEKELANGRLAMLAFLGFVIQHNVTGKGPF 259
P +VGYPGG++ P + + KE+ NGRLAMLAFLGF Q T + P
Sbjct: 189 NPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPI 248
Query: 258 ENLLQHLSDPWHNTIVQTFS 199
ENL+ HL+DP H + F+
Sbjct: 249 ENLMAHLADPGHCNVFSAFT 268
>TAIR9_protein||AT3G54890.1 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 242
Score = 128 bits (320), Expect = 8e-030
Identities = 77/193 (39%), Positives = 105/193 (54%), Gaps = 10/193 (5%)
Frame = -3
Query: 783 WLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVF 604
W+PG P YL+GS GD GFDPLGL E P NL+ + ++EL++ RWAML V G+L+PE
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 603 TKIGIINVPEW--YDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 430
+ EW G+ Y + + IL +E +++ S+ +DP K
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTIL--AIEFLAIAFVEHQRSMEKDPEKK 165
Query: 429 QYSLPPNEVGYPGGIFNPLNFAPTLEAKEKELANGRLAMLAFLGFVIQHNV-TGKGPFEN 253
+Y P G +P E K KE+ NGRLA+LAF+GF +Q + G GP EN
Sbjct: 166 KY--PGGAFDPLGYSKDPKKLE---ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLEN 220
Query: 252 LLQHLSDPWHNTI 214
L HL+DPWHN I
Sbjct: 221 LATHLADPWHNNI 233
>TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX
OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408200-6409496
FORWARD
Length = 281
Score = 126 bits (314), Expect = 4e-029
Identities = 79/204 (38%), Positives = 107/204 (52%), Gaps = 28/204 (13%)
Frame = -3
Query: 762 PGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 583
P YLNG +AGD G+DP GL + PEN + EL++ RWAMLG AG ++PE K G
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141
Query: 582 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPI 436
PE W+ D YF + + ++ ++ V + + I N G +D +
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITN-GLDFEDKL 200
Query: 435 FKQYSLPPNEVGYPGGIFNPLNFAPTLE----AKEKELANGRLAMLAFLGFVIQHNVTGK 268
+PGG F+PL A E K KE+ NGRLAM A LGF IQ VTG+
Sbjct: 201 ------------HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGE 248
Query: 267 GPFENLLQHLSDPWHNTIVQTFSG 196
GP ENL +HLSDP+ N ++ +G
Sbjct: 249 GPVENLAKHLSDPFGNNLLTVIAG 272
>TAIR9_protein||AT1G61520.1 | Symbols: LHCA3 | LHCA3; chlorophyll binding |
chr1:22700152-22701149 FORWARD
Length = 274
Score = 98 bits (243), Expect = 6e-021
Identities = 68/159 (42%), Positives = 87/159 (54%), Gaps = 25/159 (15%)
Frame = -3
Query: 642 MLGVAGMLLPEV---FTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQD 472
+LG AG++ E + + G+I AG Y+A + TLFV+E L + E RR QD
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIP-----PAGTYTYWADNYTLFVLEMALMGFAEHRRLQD 173
Query: 471 IKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFA----PTLEAKEKELAN 328
NPGS+ KQY L YPGG FNPL F E K KE+ N
Sbjct: 174 WYNPGSMG-----KQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 228
Query: 327 GRLAMLAFLGFVIQHNVTGKGPFENLLQHLSDPWHNTIV 211
GRLAMLA LG+ IQ VTG GP++NLL HL+DP +N ++
Sbjct: 229 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVL 267
>TAIR9_protein||AT1G61520.2 | Symbols: LHCA3 | LHCA3; chlorophyll binding |
chr1:22700493-22701149 FORWARD
Length = 219
Score = 98 bits (243), Expect = 6e-021
Identities = 68/159 (42%), Positives = 87/159 (54%), Gaps = 25/159 (15%)
Frame = -3
Query: 642 MLGVAGMLLPEV---FTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQD 472
+LG AG++ E + + G+I AG Y+A + TLFV+E L + E RR QD
Sbjct: 64 ILGKAGLIPAETALPWFQTGVIP-----PAGTYTYWADNYTLFVLEMALMGFAEHRRLQD 118
Query: 471 IKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFA----PTLEAKEKELAN 328
NPGS+ KQY L YPGG FNPL F E K KE+ N
Sbjct: 119 WYNPGSMG-----KQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKN 173
Query: 327 GRLAMLAFLGFVIQHNVTGKGPFENLLQHLSDPWHNTIV 211
GRLAMLA LG+ IQ VTG GP++NLL HL+DP +N ++
Sbjct: 174 GRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVL 212
>TAIR9_protein||AT5G01530.1 | Symbols: | chlorophyll A-B binding protein CP29
(LHCB4) | chr5:209084-210243 FORWARD
Length = 291
Score = 95 bits (235), Expect = 5e-020
Identities = 64/176 (36%), Positives = 85/176 (48%), Gaps = 39/176 (22%)
Frame = -3
Query: 678 FIQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASS-----------S 532
F + EL++GRWAML G L E T + W DAGK + S S
Sbjct: 136 FRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSIS 189
Query: 531 TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--- 364
TL IE ++ Y+E +R ++ + + YPGG F+PL A
Sbjct: 190 TLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLAADP 232
Query: 363 -PTLEAKEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHLSDPWHNTIVQTFS 199
T + + E+ + RLAM+AFLGF +Q TGKGP N HLSDP H TI+ TFS
Sbjct: 233 EKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288
>TAIR9_protein||AT1G15820.1 | Symbols: LHCB6, CP24 | LHCB6 (LIGHT HARVESTING
COMPLEX PSII SUBUNIT 6); chlorophyll binding | chr1:5446685-5447676
REVERSE
Length = 259
Score = 94 bits (232), Expect = 1e-019
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 22/159 (13%)
Frame = -3
Query: 792 KGEWLPGL------ASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGV 631
K W+P + P +L+GSL GD GFDPLGL +DP LKW+ +AEL++GRWAM V
Sbjct: 54 KKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 113
Query: 630 AGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNP 460
G+ + + ++ + W++AG + S +L + +L +VE +RW D NP
Sbjct: 114 LGIFVGQAWSGVA------WFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 167
Query: 459 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA 364
S + + + ++ + GYPGG F+PL A
Sbjct: 168 DSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLA 206
>TAIR9_protein||AT5G28450.1 | Symbols: | chlorophyll A-B binding protein,
chloroplast, putative / LHCI type II CAB, putative |
chr5:10372978-10374190 REVERSE
Length = 174
Score = 92 bits (227), Expect = 5e-019
Identities = 50/101 (49%), Positives = 63/101 (62%), Gaps = 6/101 (5%)
Frame = -3
Query: 483 RWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF---APT--LEAKEKELANGR 322
R DI PGSVN DP+F L ++GYPGG+ F+PL + +PT E + KE+ NGR
Sbjct: 71 RAPDIIKPGSVNTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGR 130
Query: 321 LAMLAFLGFVIQHNVTGKGPFENLLQHLSDPWHNTIVQTFS 199
LAMLA +G QH TG GP +NL HL+DP H TI F+
Sbjct: 131 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFT 171
>TAIR9_protein||AT3G54890.4 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339881-20340922 REVERSE
Length = 214
Score = 81 bits (199), Expect = 8e-016
Identities = 54/156 (34%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Frame = -3
Query: 783 WLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVF 604
W+PG P YL+GS GD GFDPLGL E P NL+ + ++EL++ RWAML V G+L+PE
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 603 TKIGIINVPEW--YDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 430
+ EW G+ Y + + IL +E +++ S+ +DP K
Sbjct: 108 GYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTIL--AIEFLAIAFVEHQRSMEKDPEKK 165
Query: 429 QYSLPPNEVGYPGGIFNPLNFAPTLEAKEKELANGR 322
+Y P G +P E K KE+ NG+
Sbjct: 166 KY--PGGAFDPLGYSKDPKKLE---ELKVKEIKNGK 196
>TAIR9_protein||AT3G54890.2 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339706-20340922 REVERSE
Length = 208
Score = 77 bits (188), Expect = 2e-014
Identities = 35/71 (49%), Positives = 46/71 (64%)
Frame = -3
Query: 783 WLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVF 604
W+PG P YL+GS GD GFDPLGL E P NL+ + ++EL++ RWAML V G+L+PE
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 603 TKIGIINVPEW 571
+ EW
Sbjct: 108 GYGNWVKAQEW 118
>TAIR9_protein||AT3G54890.3 | Symbols: LHCA1 | LHCA1; chlorophyll binding |
chr3:20339961-20340922 REVERSE
Length = 165
Score = 77 bits (188), Expect = 2e-014
Identities = 35/71 (49%), Positives = 46/71 (64%)
Frame = -3
Query: 783 WLPGLASPGYLNGSLAGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVF 604
W+PG P YL+GS GD GFDPLGL E P NL+ + ++EL++ RWAML V G+L+PE
Sbjct: 48 WMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL 107
Query: 603 TKIGIINVPEW 571
+ EW
Sbjct: 108 GYGNWVKAQEW 118
>TAIR9_protein||AT1G76570.1 | Symbols: | chlorophyll A-B binding family protein
| chr1:28729132-28730754 FORWARD
Length = 328
Score = 75 bits (183), Expect = 6e-014
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 5/73 (6%)
Frame = -3
Query: 414 PNEVGYPGG-IFNPLNFAPTLEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFENL 250
P ++ YPGG +F+PLN + A K KE+ NGRLAM+A+LGF Q TGKGP +NL
Sbjct: 250 PGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNL 309
Query: 249 LQHLSDPWHNTIV 211
+ H+SDP HN ++
Sbjct: 310 VDHVSDPLHNNLI 322
>TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL
A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-10473246
REVERSE
Length = 268
Score = 71 bits (173), Expect = 8e-013
Identities = 37/64 (57%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = -3
Query: 399 YPGGIFNPLNFAPTLEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHLSD 232
YPGG F+PL A EA K KEL NGRLAM + GF +Q VTGKGP ENL HL+D
Sbjct: 191 YPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 250
Query: 231 PWHN 220
P +N
Sbjct: 251 PVNN 254
>TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL
A/B-BINDING PROTEIN 2); chlorophyll binding | chr1:10475089-10475892
REVERSE
Length = 268
Score = 71 bits (173), Expect = 8e-013
Identities = 37/64 (57%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = -3
Query: 399 YPGGIFNPLNFAPTLEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHLSD 232
YPGG F+PL A EA K KEL NGRLAM + GF +Q VTGKGP ENL HL+D
Sbjct: 191 YPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 250
Query: 231 PWHN 220
P +N
Sbjct: 251 PVNN 254
>TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1
(CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding |
chr1:10478071-10478874 FORWARD
Length = 268
Score = 71 bits (173), Expect = 8e-013
Identities = 37/64 (57%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = -3
Query: 399 YPGGIFNPLNFAPTLEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHLSD 232
YPGG F+PL A EA K KEL NGRLAM + GF +Q VTGKGP ENL HL+D
Sbjct: 191 YPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 250
Query: 231 PWHN 220
P +N
Sbjct: 251 PVNN 254
>TAIR9_protein||AT3G08940.2 | Symbols: LHCB4.2 | LHCB4.2 (light harvesting
complex PSII); chlorophyll binding | chr3:2717717-2718665 FORWARD
Length = 288
Score = 68 bits (164), Expect = 9e-012
Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Frame = -3
Query: 399 YPGG-IFNPLNFA--PTLEAKEK--ELANGRLAMLAFLGFVIQHNVTGKGPFENLLQHLS 235
YPGG F+PL A P +A+ + E+ + RLAM+ FLGF +Q TGKGP N HLS
Sbjct: 214 YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLS 273
Query: 234 DPWHNTIVQTFS 199
DP H TI+ TFS
Sbjct: 274 DPLHTTIIDTFS 285
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,043,379,755
Number of Sequences: 33410
Number of Extensions: 9043379755
Number of Successful Extensions: 311883418
Number of sequences better than 0.0: 0
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