BLASTX 7.6.2
Query= UN17320 /QuerySize=1298
(1297 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G40010.1 | Symbols: | 60S acidic ribosomal pr... 574 4e-164
TAIR9_protein||AT3G09200.1 | Symbols: | 60S acidic ribosomal pr... 510 1e-144
TAIR9_protein||AT3G11250.1 | Symbols: | 60S acidic ribosomal pr... 504 5e-143
TAIR9_protein||AT3G09200.2 | Symbols: | 60S acidic ribosomal pr... 403 2e-112
TAIR9_protein||AT1G25260.1 | Symbols: | acidic ribosomal protei... 57 2e-008
>TAIR9_protein||AT2G40010.1 | Symbols: | 60S acidic ribosomal protein P0
(RPP0A) | chr2:16708578-16710448 REVERSE
Length = 318
Score = 574 bits (1479), Expect = 4e-164
Identities = 296/319 (92%), Positives = 307/319 (96%), Gaps = 1/319 (0%)
Frame = +1
Query: 163 MAVKATKAEKKIVYDSKLCQLLNEYPQILIVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 342
MAVKATKAEKKIVYDSKLCQLLNEY QIL+VAADNVGSTQLQNIRKGLRGDSVVLMGKNT
Sbjct: 1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60
Query: 343 MMKRSVKLHAQKTGNDGFLNLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 522
MMKRSV++HA KTGN FL+L+PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA
Sbjct: 61 MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120
Query: 523 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 702
PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK
Sbjct: 121 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 180
Query: 703 LGIRPFSYGLVVESVYDNGSVFDPEVLNLTEDDLVEKFAAGVSLVTAFSLAISYPTIAAA 882
LGIRPFSYGLVVESVYDNGSVF+PEVLNLTEDDLVEKFAAGVS++TA SLAISYPT+AAA
Sbjct: 181 LGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAA 240
Query: 883 PHMFLNAYKNVLAIALATEYSFPQAENVKEFLKDPSKFAVASAVAPVSGESSGAPVVAAV 1062
PHMFLNAYKNVLA+ALATEYSFPQAENVKEFLKDP+KFAVA A APVSGES GA V AV
Sbjct: 241 PHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKFAVAVA-APVSGESGGAVVAVAV 299
Query: 1063 EEEAAEESDGDMGFDLFG* 1119
EEEAAEESDGDMGFDLFG*
Sbjct: 300 EEEAAEESDGDMGFDLFG* 318
>TAIR9_protein||AT3G09200.1 | Symbols: | 60S acidic ribosomal protein P0
(RPP0B) | chr3:2823364-2825020 REVERSE
Length = 321
Score = 510 bits (1312), Expect = 1e-144
Identities = 260/316 (82%), Positives = 286/316 (90%), Gaps = 1/316 (0%)
Frame = +1
Query: 169 VKATKAEKKIVYDSKLCQLLNEYPQILIVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 348
VKATKAEKKI YD+KLCQL++EY QIL+VAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM
Sbjct: 2 VKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 61
Query: 349 KRSVKLHAQKTGNDGFLNLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI 528
KRSV++H++ TGN LNL+PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI
Sbjct: 62 KRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI 121
Query: 529 DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 708
DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALLAKLG
Sbjct: 122 DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLG 181
Query: 709 IRPFSYGLVVESVYDNGSVFDPEVLNLTEDDLVEKFAAGVSLVTAFSLAISYPTIAAAPH 888
IRPFSYGLVV+SVYDNGSVF PEVL+LTED LVEKFA+G+S+VT+ +LA+SYPT+AAAPH
Sbjct: 182 IRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPH 241
Query: 889 MFLNAYKNVLAIALATEYSFPQAENVKEFLKDPSKFAVASAVAPVSGESSGAPVVAAVEE 1068
MF+NAYKN LAIA+ATEY+FPQAE VKE+LKDPSKFAVAS A + GAP A VEE
Sbjct: 242 MFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPAAAKVEE 301
Query: 1069 -EAAEESDGDMGFDLF 1113
E ++E D F LF
Sbjct: 302 KEESDEEDYGGDFGLF 317
>TAIR9_protein||AT3G11250.1 | Symbols: | 60S acidic ribosomal protein P0
(RPP0C) | chr3:3521453-3522826 FORWARD
Length = 324
Score = 504 bits (1297), Expect = 5e-143
Identities = 259/319 (81%), Positives = 288/319 (90%), Gaps = 4/319 (1%)
Frame = +1
Query: 169 VKATKAEKKIVYDSKLCQLLNEYPQILIVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 348
VKATKAEKKI YD+KLCQL++EY QIL+VAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM
Sbjct: 2 VKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMM 61
Query: 349 KRSVKLHAQKTGNDGFLNLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI 528
KRSV++H++ +GN LNL+PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI
Sbjct: 62 KRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPI 121
Query: 529 DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 708
DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALLAKLG
Sbjct: 122 DVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLG 181
Query: 709 IRPFSYGLVVESVYDNGSVFDPEVLNLTEDDLVEKFAAGVSLVTAFSLAISYPTIAAAPH 888
IRPFSYGLVV+SVYDNGSVF PEVL+LTED LVEKFA+G+S+VT+ +LA+SYPT+AAAPH
Sbjct: 182 IRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPH 241
Query: 889 MFLNAYKNVLAIALATEYSFPQAENVKEFLKDPSKFAVASAV--APVSGESSGAPVVAAV 1062
MF+NAYKN LAIA+AT+Y+FPQAE VKEFLKDPSKF VA+A A G S+ A A V
Sbjct: 242 MFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKFVVAAAAVSADAGGGSAQAGAAAKV 301
Query: 1063 EE--EAAEESDGDMGFDLF 1113
EE E ++E D + GF LF
Sbjct: 302 EEKKEESDEEDYEGGFGLF 320
>TAIR9_protein||AT3G09200.2 | Symbols: | 60S acidic ribosomal protein P0
(RPP0B) | chr3:2823364-2825020 REVERSE
Length = 288
Score = 403 bits (1034), Expect = 2e-112
Identities = 205/258 (79%), Positives = 229/258 (88%), Gaps = 1/258 (0%)
Frame = +1
Query: 343 MMKRSVKLHAQKTGNDGFLNLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 522
++ RSV++H++ TGN LNL+PLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA
Sbjct: 27 ILVRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 86
Query: 523 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAK 702
PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALLAK
Sbjct: 87 PIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAK 146
Query: 703 LGIRPFSYGLVVESVYDNGSVFDPEVLNLTEDDLVEKFAAGVSLVTAFSLAISYPTIAAA 882
LGIRPFSYGLVV+SVYDNGSVF PEVL+LTED LVEKFA+G+S+VT+ +LA+SYPT+AAA
Sbjct: 147 LGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAA 206
Query: 883 PHMFLNAYKNVLAIALATEYSFPQAENVKEFLKDPSKFAVASAVAPVSGESSGAPVVAAV 1062
PHMF+NAYKN LAIA+ATEY+FPQAE VKE+LKDPSKFAVAS A + GAP A V
Sbjct: 207 PHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKFAVASVAAVSADAGGGAPAAAKV 266
Query: 1063 EE-EAAEESDGDMGFDLF 1113
EE E ++E D F LF
Sbjct: 267 EEKEESDEEDYGGDFGLF 284
Score = 61 bits (146), Expect = 2e-009
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Frame = +1
Query: 169 VKATKAEKKIVYDSKLCQLLNEYPQILI----VAADNVGSTQLQNIRKGLRGDSVVLMGK 336
VKATKAEKKI YD+KLCQL++EY QIL+ + ++N G+T + N+ L+G+ ++ K
Sbjct: 2 VKATKAEKKIAYDTKLCQLIDEYTQILVRSVRIHSENTGNTAILNLLPLLQGNVGLIFTK 61
Query: 337 NTMMKRSVKLHAQKTG 384
+ + S ++ K G
Sbjct: 62 GDLKEVSEEVAKYKVG 77
>TAIR9_protein||AT1G25260.1 | Symbols: | acidic ribosomal protein P0-related |
chr1:8854163-8855766 REVERSE
Length = 236
Score = 57 bits (136), Expect = 2e-008
Identities = 36/172 (20%), Positives = 81/172 (47%), Gaps = 1/172 (0%)
Frame = +1
Query: 220 QLLNEYPQILIVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVKLHAQKTGNDGFL 399
+ + +Y + + + +N+ + + + R+ R + +G N +M+ ++ A+ G
Sbjct: 32 EAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSGIY 91
Query: 400 NLMPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGN-TGLDPSQT 576
+ LL+G+ GL+ T +EV Y+ +R G +A V ++ G
Sbjct: 92 KVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEME 151
Query: 577 SFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGL 732
+ L +P ++NKGTVE++ + ++G ++ A +L L ++ ++ L
Sbjct: 152 PLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,087,202,181
Number of Sequences: 33410
Number of Extensions: 9087202181
Number of Successful Extensions: 311895222
Number of sequences better than 0.0: 0
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