BLASTX 7.6.2
Query= UN17439 /QuerySize=605
(604 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G20030.1 | Symbols: | RNA recognition motif (... 261 3e-070
TAIR9_protein||AT3G20930.1 | Symbols: | RNA recognition motif (... 75 4e-014
TAIR9_protein||AT4G19610.1 | Symbols: | RNA binding / nucleic a... 73 1e-013
TAIR9_protein||AT5G06210.1 | Symbols: | RNA-binding protein, pu... 64 8e-011
TAIR9_protein||AT2G37510.1 | Symbols: | RNA-binding protein, pu... 62 3e-010
TAIR9_protein||AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1-70K (... 57 6e-009
TAIR9_protein||AT2G19380.1 | Symbols: | RNA recognition motif (... 57 1e-008
TAIR9_protein||AT2G22100.1 | Symbols: | RNA recognition motif (... 55 3e-008
TAIR9_protein||AT4G00830.1 | Symbols: | RNA recognition motif (... 55 3e-008
TAIR9_protein||AT4G00830.2 | Symbols: | RNA recognition motif (... 55 3e-008
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 54 8e-008
TAIR9_protein||AT5G51300.1 | Symbols: | splicing factor-related... 54 8e-008
TAIR9_protein||AT5G51300.2 | Symbols: | splicing factor-related... 54 8e-008
TAIR9_protein||AT5G51300.3 | Symbols: | splicing factor-related... 54 8e-008
TAIR9_protein||AT5G18810.1 | Symbols: SCL28 | SCL28; RNA binding... 52 2e-007
TAIR9_protein||AT2G21440.1 | Symbols: | RNA recognition motif (... 51 5e-007
TAIR9_protein||AT3G15010.1 | Symbols: | RNA recognition motif (... 50 7e-007
TAIR9_protein||AT3G15010.2 | Symbols: | RNA recognition motif (... 50 7e-007
TAIR9_protein||AT2G46780.1 | Symbols: | RNA binding / nucleic a... 50 9e-007
>TAIR9_protein||AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:10846362-10847246 FORWARD
Length = 153
Score = 261 bits (666), Expect = 3e-070
Identities = 128/153 (83%), Positives = 139/153 (90%)
Frame = +1
Query: 22 MWSATLAFPSFVASSTSLSSYAKPRLPKIQASLSNYPLASKIMVRNLPFSTSEDFLQKEF 201
MWSATL+FPSFVASS+SL +Y R PKI+ASL NYPLASKIMVRNLPFSTSEDFL++EF
Sbjct: 1 MWSATLSFPSFVASSSSLPNYRNLRFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREF 60
Query: 202 SAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIETMDRRMYNGRMIYIDIAKPGK 381
SAFGEIAEVKL+KDE+MKRSKGYAFIQ+ SQDDAFLAIETMDRRMYNGRMIYIDIAKPGK
Sbjct: 61 SAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPGK 120
Query: 382 RDFQQQPRTSGPPEKLQVPEEPASNEVADCWY* 480
RDFQ PRTSGPPEK PEE A++EVADCWY*
Sbjct: 121 RDFQGLPRTSGPPEKSDEPEEAANDEVADCWY* 153
>TAIR9_protein||AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331739-7333749 FORWARD
Length = 375
Score = 75 bits (182), Expect = 4e-014
Identities = 34/77 (44%), Positives = 53/77 (68%)
Frame = +1
Query: 142 KIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIET 321
K+ + L F TSE L+ F FGE+ EVK++ D+ KRSKGYAF++Y +++ A A++
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 322 MDRRMYNGRMIYIDIAK 372
M+ ++ NG MI +D+AK
Sbjct: 343 MNGKIINGWMIVVDVAK 359
>TAIR9_protein||AT4G19610.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr4:10677482-10681623 FORWARD
Length = 817
Score = 73 bits (177), Expect = 1e-013
Identities = 38/101 (37%), Positives = 62/101 (61%)
Frame = +1
Query: 142 KIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIET 321
++ VRNLP++ +E+ L + FS FG+I+EV LV D+ KRS+G A+I Y+ + A A+E
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354
Query: 322 MDRRMYNGRMIYIDIAKPGKRDFQQQPRTSGPPEKLQVPEE 444
+D + GR+++I AK + +Q TS P+ + E
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPKTFKQKRE 395
>TAIR9_protein||AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878497-1879515 FORWARD
Length = 147
Score = 64 bits (153), Expect = 8e-011
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +1
Query: 133 LASKIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLA 312
+ASK+ + L F T+E L + FS G++ E ++V D RSKG+ F+ + S D+A A
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 313 IETMDRRMYNGRMIYIDIAK 372
+ + + NGR I++D AK
Sbjct: 92 LMEFNGQQLNGRTIFVDYAK 111
>TAIR9_protein||AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15743112-15744504 REVERSE
Length = 143
Score = 62 bits (148), Expect = 3e-010
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Frame = +1
Query: 40 AFPSFVASSTSLSSYAKPRLPKIQASLSNYPLASKIMVRNLPFSTSEDFLQKEFSAFGEI 219
+F VA S+SL S P L + S P ++ V L T+ + LQ F++FG++
Sbjct: 6 SFRRLVAGSSSLLS--SPSLCVRRCSTLTSP---RLFVSGLSRLTTNEKLQDAFASFGQL 60
Query: 220 AEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIETMDRRMYNGRMIYIDIAKP--GKRDFQ 393
+ +++ D RSKG+ F+ Y + +DA A M+ + +G +I++D A+P +R Q
Sbjct: 61 VDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRRPLQ 120
Query: 394 QQP 402
Q+P
Sbjct: 121 QEP 123
>TAIR9_protein||AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1-70K (U1 SMALL
NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding /
nucleotide binding | chr3:18826476-18829492 REVERSE
Length = 428
Score = 57 bits (137), Expect = 6e-009
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +1
Query: 145 IMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIETM 324
+ V L + +SE +++EF ++G I V LV D+ + KGYAFI+YM D A +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 325 DRRMYNGRMIYIDIAKPGKRDFQQQPRTSG 414
D + +GR + +D+ + G+ +PR G
Sbjct: 200 DGQKIDGRRVLVDVER-GRTVPNWRPRRLG 228
>TAIR9_protein||AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD
Length = 614
Score = 57 bits (135), Expect = 1e-008
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +1
Query: 145 IMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIETM 324
I VR + T+++ L+ F ++GEI E +V D+ R KGY F+ + ++ A A++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 325 DRRMYNGRMIYIDIA--KPGKRDFQQ 396
++RMYN R++ ++A KPGK +Q
Sbjct: 470 EKRMYN-RIVVCNLASEKPGKAGKEQ 494
>TAIR9_protein||AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9392397-9393545 REVERSE
Length = 383
Score = 55 bits (131), Expect = 3e-008
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 145 IMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIETM 324
I VR L + T+ + L+ F +GEI E +V D+ R+KG+ F+ + ++ A A++
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 325 DRRMYNGRMIYIDIAKP---GKRDFQQQP 402
++RMYN R + A+P GK QQQP
Sbjct: 225 EKRMYN-RTVSCLPARPFNSGKPREQQQP 252
>TAIR9_protein||AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 496
Score = 55 bits (131), Expect = 3e-008
Identities = 31/91 (34%), Positives = 49/91 (53%)
Frame = +1
Query: 118 LSNYPLASKIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQD 297
LS P S++ + LP E+ L+ GEI EV+L+KD SKGYAF+ + ++D
Sbjct: 109 LSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKD 168
Query: 298 DAFLAIETMDRRMYNGRMIYIDIAKPGKRDF 390
A AIE + + + G+ I +++ R F
Sbjct: 169 VAQKAIEELHSKEFKGKTIRCSLSETKNRLF 199
>TAIR9_protein||AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 496
Score = 55 bits (131), Expect = 3e-008
Identities = 31/91 (34%), Positives = 49/91 (53%)
Frame = +1
Query: 118 LSNYPLASKIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQD 297
LS P S++ + LP E+ L+ GEI EV+L+KD SKGYAF+ + ++D
Sbjct: 109 LSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKD 168
Query: 298 DAFLAIETMDRRMYNGRMIYIDIAKPGKRDF 390
A AIE + + + G+ I +++ R F
Sbjct: 169 VAQKAIEELHSKEFKGKTIRCSLSETKNRLF 199
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 54 bits (127), Expect = 8e-008
Identities = 29/83 (34%), Positives = 47/83 (56%)
Frame = +1
Query: 112 ASLSNYPLASKIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMS 291
+S S+ P+ + + V +L S +E L F+ F + V+L KD S RS Y + ++S
Sbjct: 15 SSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLS 74
Query: 292 QDDAFLAIETMDRRMYNGRMIYI 360
+ DA LAIE + + NG+MI +
Sbjct: 75 RQDANLAIEKKNNSLLNGKMIRV 97
>TAIR9_protein||AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (127), Expect = 8e-008
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Frame = +1
Query: 160 LPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIETMDRRMY 339
LP +D L FS+FGEI K++KD SKGY F++Y A A++ M+ +
Sbjct: 487 LPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRF 546
Query: 340 NGRMIYI--------DIAKPGKRDFQQQPRTSGPPEKLQVPEEPASNEVADCWY*T 483
GR + + IA PG QP T G P Q P S + A Y T
Sbjct: 547 EGRTLAVRIAGKSPPPIAPPGPP--APQPPTQGYPPSNQPPGAYPSQQYATGGYST 600
>TAIR9_protein||AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (127), Expect = 8e-008
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Frame = +1
Query: 160 LPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIETMDRRMY 339
LP +D L FS+FGEI K++KD SKGY F++Y A A++ M+ +
Sbjct: 487 LPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRF 546
Query: 340 NGRMIYI--------DIAKPGKRDFQQQPRTSGPPEKLQVPEEPASNEVADCWY*T 483
GR + + IA PG QP T G P Q P S + A Y T
Sbjct: 547 EGRTLAVRIAGKSPPPIAPPGPP--APQPPTQGYPPSNQPPGAYPSQQYATGGYST 600
>TAIR9_protein||AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (127), Expect = 8e-008
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Frame = +1
Query: 160 LPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIETMDRRMY 339
LP +D L FS+FGEI K++KD SKGY F++Y A A++ M+ +
Sbjct: 487 LPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRF 546
Query: 340 NGRMIYI--------DIAKPGKRDFQQQPRTSGPPEKLQVPEEPASNEVADCWY*T 483
GR + + IA PG QP T G P Q P S + A Y T
Sbjct: 547 EGRTLAVRIAGKSPPPIAPPGPP--APQPPTQGYPPSNQPPGAYPSQQYATGGYST 600
>TAIR9_protein||AT5G18810.1 | Symbols: SCL28 | SCL28; RNA binding / nucleic acid
binding / nucleotide binding | chr5:6268925-6271158 REVERSE
Length = 237
Score = 52 bits (123), Expect = 2e-007
Identities = 25/92 (27%), Positives = 50/92 (54%)
Frame = +1
Query: 139 SKIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIE 318
S +++RNLP + L+ F FG + ++ L ++ +G+ F++Y +DA A++
Sbjct: 47 SGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMK 106
Query: 319 TMDRRMYNGRMIYIDIAKPGKRDFQQQPRTSG 414
M+ ++ GR I I A+ ++ Q+ T+G
Sbjct: 107 RMNHKVIGGREIAIVFAEENRKTPQEMRTTNG 138
>TAIR9_protein||AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9173712-9179065 REVERSE
Length = 1004
Score = 51 bits (120), Expect = 5e-007
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Frame = +1
Query: 55 VASSTSLSSYAKPRLPKIQA---SLSNYPLASKIMVRNLPFSTSEDFLQKEFSAFGEIAE 225
VA S+ +S K K+ A + N + +RNLPF +++ +++ F+ FGE+
Sbjct: 530 VADSSGVSEPLKSGKTKVVAPKETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVES 589
Query: 226 VKLVKDESMKRSKGYAFIQYMSQDDAFLAIETMD 327
+ LV + KR +G AF+++ + D + AI D
Sbjct: 590 LSLVLHKVTKRPEGTAFVKFKTADASVAAISAAD 623
Score = 50 bits (117), Expect = 1e-006
Identities = 26/78 (33%), Positives = 44/78 (56%)
Frame = +1
Query: 142 KIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIET 321
K+++RNLPF ++ FSA G + +V + K+ KG+AF+++ + DA AI+
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 322 MDRRMYNGRMIYIDIAKP 375
+ M+ R I +D A P
Sbjct: 392 FNGHMFGKRPIAVDWAVP 409
>TAIR9_protein||AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052844-5054058 FORWARD
Length = 405
Score = 50 bits (119), Expect = 7e-007
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 142 KIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIET 321
K+ +R L T+ + L+ FS++G++ E ++ D+ +SKGY F+ +M D A LA++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 322 MDRRMYNGRMIYIDIAKPGKR 384
+++ +GR+ +A G +
Sbjct: 136 PSKKI-DGRVTVTQLAASGNQ 155
>TAIR9_protein||AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052844-5054058 FORWARD
Length = 405
Score = 50 bits (119), Expect = 7e-007
Identities = 24/81 (29%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +1
Query: 142 KIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIET 321
K+ +R L T+ + L+ FS++G++ E ++ D+ +SKGY F+ +M D A LA++
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 322 MDRRMYNGRMIYIDIAKPGKR 384
+++ +GR+ +A G +
Sbjct: 136 PSKKI-DGRVTVTQLAASGNQ 155
>TAIR9_protein||AT2G46780.1 | Symbols: | RNA binding / nucleic acid binding /
nucleotide binding | chr2:19229516-19231043 FORWARD
Length = 337
Score = 50 bits (118), Expect = 9e-007
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Frame = +1
Query: 139 SKIMVRNLPFSTSEDFLQKEFSAFGEIAEVKLVKDESMKRSKGYAFIQYMSQDDAFLAIE 318
+KI V L + T D +++ F FGEI E ++ D++ RSKGY F+ + + A A +
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 319 TMDRRMYNGRMIYIDIAKPGKRDFQQQPRTSGPP 420
M+ + +GR ++A G Q+PR P
Sbjct: 82 NMN-PVIDGRRANCNLACLG----AQKPRPPTSP 110
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,179,765,564
Number of Sequences: 33410
Number of Extensions: 9179765564
Number of Successful Extensions: 317221290
Number of sequences better than 0.0: 0
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