BLASTX 7.6.2
Query= UN17487 /QuerySize=1079
(1078 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabido... 425 3e-118
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabido... 366 2e-100
sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabido... 201 9e-051
sp|Q5KBW2|PABP_CRYNE Polyadenylate-binding protein, cytoplasmic ... 88 8e-017
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sa... 80 2e-014
sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=... 76 3e-013
sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenop... 75 6e-013
sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenop... 75 6e-013
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos tau... 75 9e-013
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sa... 75 9e-013
sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo a... 75 9e-013
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus mus... 74 2e-012
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus no... 74 2e-012
sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A ... 74 2e-012
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana
GN=PAB5 PE=1 SV=2
Length = 668
Score = 425 bits (1092), Expect = 3e-118
Identities = 214/301 (71%), Positives = 243/301 (80%), Gaps = 10/301 (3%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVF-------SMR 160
RGFGFVA+S+PEEAL A+ EMNGKMIGRKPLY+A AQRKEER+ HLQ++F +M
Sbjct: 368 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS 427
Query: 161 P-NVPMGGFHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGPAN 337
P PM GFHHHP GGP GPHH M++G NGQG+VPSQPMGYGYQ+QFMPG+RPGAGP N
Sbjct: 428 PVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMPGMRPGAGPPN 487
Query: 338 YMMPYPLQRQNHPGPRVGFRRGAPNMQHHFQQQQQIMQHNGRYMGGVGNMMNRVEASAPQ 517
+MMP+PLQRQ PGPRVGFRRGA NMQ FQQQQ + Q+ R+MGG GN N +EASAPQ
Sbjct: 488 FMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQNASRFMGGAGNRRNGMEASAPQ 547
Query: 518 GII--PLDASAISHNGSQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQEP 691
GII PL+ASA SHN Q +P L ISKL S LALASP H ++LG+ LYPLVE+QEP
Sbjct: 548 GIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEP 607
Query: 692 VHVAKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLSANPTAVSSVDDQFAPSST 871
+ AKVTGMLLEMDQAEILHLLESPEALKAKV+ ALDVLR SA+P AVSSVDDQFA SS+
Sbjct: 608 ANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSS 667
Query: 872 E 874
E
Sbjct: 668 E 668
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana
GN=PAB3 PE=2 SV=1
Length = 660
Score = 366 bits (938), Expect = 2e-100
Identities = 188/281 (66%), Positives = 222/281 (79%), Gaps = 7/281 (2%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFS-MRPNVPMG 178
RGFGFVA+S+PEEALRAL+EMNGKMIGRKPLYIA AQRKE+RR HLQ +FS +R PM
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMS 431
Query: 179 GFHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGPANYMMPYPL 358
GF HHP GGP GP MY+GQNG MVPSQP+GYG+Q QFMPG+RPG+GP N+++PYPL
Sbjct: 432 GF-HHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYPL 490
Query: 359 QRQNHPGPRVGFRRGAPNMQHHFQQQQQIMQHNG----RYMGGVGNMMNRVEASAPQGII 526
QRQ GPR+GFRRGA N+Q H QQQQ+M N RYM G N N +++S PQGI+
Sbjct: 491 QRQPQTGPRMGFRRGATNVQQHI-QQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGIL 549
Query: 527 PLDASAISHNGSQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQEPVHVAK 706
P S + Q+ LLPISKLTS+LA ASPA+ +++LGEQLYPLVE+ EP+HVAK
Sbjct: 550 PPIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAK 609
Query: 707 VTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLSANPT 829
VTGMLLEMDQAEILHL+ESPEALK+KV+ ALDVLRLS +PT
Sbjct: 610 VTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPT 650
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana
GN=PAB2 PE=1 SV=1
Length = 629
Score = 201 bits (510), Expect = 9e-051
Identities = 131/277 (47%), Positives = 163/277 (58%), Gaps = 29/277 (10%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFS------MRP 163
+G GFVAF++PEEA A+++++GKMI KPLY+A AQRKE+RR LQ FS M+P
Sbjct: 358 KGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQP 417
Query: 164 NVPMGGFHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGPA-NY 340
+V +P GGP G QM+ GQ M+P QP GYGYQ Q +PG+RPG GP ++
Sbjct: 418 SVG-PRMPVYPPGGPGIG--QQMFYGQAPPAMIPPQP-GYGYQQQLVPGMRPGGGPVPSF 473
Query: 341 MMPYPLQRQNHPGPRVGFRRGAPNMQHHFQQQQQIMQHNGRYMGGVGNMMNRVEASAPQG 520
MP +Q PG G RR P H QQQ +MQ + M G M + G
Sbjct: 474 FMPMVQPQQQRPG---GGRR--PGGIQHSQQQNPMMQ---QQMHPRGRMFRYPQGRGGSG 525
Query: 521 IIPLDASAISHNGSQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQEPVHV 700
+P ++ N L I L S L+ A+P +LGE LYPLVE+ E
Sbjct: 526 DVP------PYDMGNNMP----LTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESA 575
Query: 701 AKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLR 811
AKVTGMLLEMDQ E+LHLLESPEALKAKVA A+DVLR
Sbjct: 576 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 612
>sp|Q5KBW2|PABP_CRYNE Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1
Length = 673
Score = 88 bits (217), Expect = 8e-017
Identities = 58/124 (46%), Positives = 69/124 (55%), Gaps = 17/124 (13%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMRPNVPMGG 181
RGFGFV +SSP+EA +A++EMNGKMIG KPLY+A AQRK+ RR L++ + R M
Sbjct: 370 RGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQRAQQRM-- 427
Query: 182 FHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVR------PGAGPANYM 343
AG P Q YMGQ G P GYG + MP VR PGA P N M
Sbjct: 428 ------QYGAGFPGMQGYMGQPMYGYPPMP--GYGQPMPGMPPVRGPMMGYPGA-PQNMM 478
Query: 344 MPYP 355
P
Sbjct: 479 QSRP 482
Score = 77 bits (188), Expect = 2e-013
Identities = 49/105 (46%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Frame = +2
Query: 509 APQGIIPLDASAISHNGS-----QNQQRPALLPISKLTSALALASPANHSQILGEQLYPL 673
APQG L A +I G Q PA +LA A+PA Q+LGE LYPL
Sbjct: 540 APQG---LPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPL 596
Query: 674 VEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVL 808
+ + +P K+TGMLLEMD AE+LHL+ES AL+ KV AL VL
Sbjct: 597 IHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4
PE=1 SV=1
Length = 644
Score = 80 bits (197), Expect = 2e-014
Identities = 54/143 (37%), Positives = 73/143 (51%), Gaps = 15/143 (10%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMRPNVPMGG 181
+GFGFV FSSPEEA +A+ EMNG+++G KPLY+A AQRKEER+ HL + R + G
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR----VAG 388
Query: 182 FHHHPTGG------PAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGPANYM 343
P PA G + + Q QG P Q++ P + G P +
Sbjct: 389 MRALPANAILNQFQPAAGGYFVPAVPQ-AQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQ 447
Query: 344 -MPYPLQRQNHPGPRVGFRRGAP 409
MP +++ GPR R AP
Sbjct: 448 GMPSAIRQS---GPRPTLRHLAP 467
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus
tropicalis GN=epabp PE=2 SV=1
Length = 629
Score = 76 bits (186), Expect = 3e-013
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +2
Query: 608 SALALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKV 787
S+LA A P Q+LGE+LYPL+ + P K+TGMLLE+D +E+LH+LESPE+L +KV
Sbjct: 545 SSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKV 604
Query: 788 AMALDVLR 811
A+ VL+
Sbjct: 605 EEAVAVLQ 612
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis
GN=pabpc1-a PE=1 SV=3
Length = 633
Score = 75 bits (184), Expect = 6e-013
Identities = 37/79 (46%), Positives = 52/79 (65%)
Frame = +2
Query: 608 SALALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKV 787
S LA A P Q+LGE+L+PL++ P K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 546 SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKV 605
Query: 788 AMALDVLRLSANPTAVSSV 844
A+ VL+ A V
Sbjct: 606 DEAVAVLQAHQAKEAAQKV 624
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis
GN=pabpc1-b PE=2 SV=1
Length = 633
Score = 75 bits (184), Expect = 6e-013
Identities = 37/79 (46%), Positives = 52/79 (65%)
Frame = +2
Query: 608 SALALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKV 787
S LA A P Q+LGE+L+PL++ P K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 546 SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKV 605
Query: 788 AMALDVLRLSANPTAVSSV 844
A+ VL+ A V
Sbjct: 606 DEAVAVLQAHQAKEAAQKV 624
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1
PE=2 SV=1
Length = 636
Score = 75 bits (182), Expect = 9e-013
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +2
Query: 608 SALALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKV 787
S LA A P Q+LGE+L+PL++ P K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKV 607
Query: 788 AMALDVLR 811
A+ VL+
Sbjct: 608 DEAVAVLQ 615
Score = 74 bits (180), Expect = 2e-012
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMR------- 160
+GFGFV FSSPEEA +A+ EMNG+++ KPLY+A AQRKEER+ HL + R
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAV 392
Query: 161 PNVPMGGFHHHPTGG 205
PN + + P G
Sbjct: 393 PNPVINPYQPAPPSG 407
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1
PE=1 SV=2
Length = 636
Score = 75 bits (182), Expect = 9e-013
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +2
Query: 608 SALALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKV 787
S LA A P Q+LGE+L+PL++ P K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKV 607
Query: 788 AMALDVLR 811
A+ VL+
Sbjct: 608 DEAVAVLQ 615
Score = 74 bits (180), Expect = 2e-012
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMR------- 160
+GFGFV FSSPEEA +A+ EMNG+++ KPLY+A AQRKEER+ HL + R
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAV 392
Query: 161 PNVPMGGFHHHPTGG 205
PN + + P G
Sbjct: 393 PNPVINPYQPAPPSG 407
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1
PE=2 SV=1
Length = 636
Score = 75 bits (182), Expect = 9e-013
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +2
Query: 608 SALALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKV 787
S LA A P Q+LGE+L+PL++ P K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKV 607
Query: 788 AMALDVLR 811
A+ VL+
Sbjct: 608 DEAVAVLQ 615
Score = 74 bits (180), Expect = 2e-012
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMR------- 160
+GFGFV FSSPEEA +A+ EMNG+++ KPLY+A AQRKEER+ HL + R
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAV 392
Query: 161 PNVPMGGFHHHPTGG 205
PN + + P G
Sbjct: 393 PNPVINPYQPAPPSG 407
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1
PE=1 SV=1
Length = 636
Score = 74 bits (180), Expect = 2e-012
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMR------- 160
+GFGFV FSSPEEA +A+ EMNG+++ KPLY+A AQRKEER+ HL + R
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAV 392
Query: 161 PNVPMGGFHHHPTGG 205
PN + + P G
Sbjct: 393 PNPVINPYQPAPPSG 407
Score = 74 bits (180), Expect = 2e-012
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +2
Query: 608 SALALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKV 787
S LA A P Q+LGE+L+PL++ P K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKV 607
Query: 788 AMALDVLR 811
A+ VL+
Sbjct: 608 DEAVAVLQ 615
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus
GN=Pabpc1 PE=2 SV=1
Length = 636
Score = 74 bits (180), Expect = 2e-012
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMR------- 160
+GFGFV FSSPEEA +A+ EMNG+++ KPLY+A AQRKEER+ HL + R
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAV 392
Query: 161 PNVPMGGFHHHPTGG 205
PN + + P G
Sbjct: 393 PNPVINPYQPAPPSG 407
Score = 74 bits (180), Expect = 2e-012
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +2
Query: 608 SALALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKV 787
S LA A P Q+LGE+L+PL++ P K+TGMLLE+D +E+LH+LESPE+L++KV
Sbjct: 548 SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKV 607
Query: 788 AMALDVLR 811
A+ VL+
Sbjct: 608 DEAVAVLQ 615
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus
laevis GN=epabp-a PE=1 SV=2
Length = 629
Score = 74 bits (179), Expect = 2e-012
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Frame = +2
Query: 545 ISHNGSQNQQRPALLPISK---LTSALALASPANHSQILGEQLYPLVEKQEPVHVAKVTG 715
+S Q PA+L + S LA A P Q+LGE++YP++ + P K+TG
Sbjct: 521 VSSTHLQQVMEPAVLMQGQEPLTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITG 580
Query: 716 MLLEMDQAEILHLLESPEALKAKVAMALDVLR 811
MLLE+D +E+LH+LESPE+L +KV A+ VL+
Sbjct: 581 MLLEIDNSELLHMLESPESLHSKVEEAVAVLQ 612
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,471,325,924
Number of Sequences: 518415
Number of Extensions: 72471325924
Number of Successful Extensions: 505334272
Number of sequences better than 0.0: 0
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