BLASTX 7.6.2
Query= UN17487 /QuerySize=1079
(1078 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 426 2e-119
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 366 2e-101
TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A... 211 1e-054
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 201 8e-052
TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2... 201 8e-052
TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDI... 74 1e-013
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 65 5e-011
TAIR9_protein||AT3G19350.1 | Symbols: MPC | MPC (MATERNALLY EXPR... 60 2e-009
TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDI... 50 2e-006
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 426 bits (1093), Expect = 2e-119
Identities = 214/302 (70%), Positives = 243/302 (80%), Gaps = 10/302 (3%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVF-------SMR 160
RGFGFVA+S+PEEAL A+ EMNGKMIGRKPLY+A AQRKEER+ HLQ++F +M
Sbjct: 368 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS 427
Query: 161 P-NVPMGGFHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGPAN 337
P PM GFHHHP GGP GPHH M++G NGQG+VPSQPMGYGYQ+QFMPG+RPGAGP N
Sbjct: 428 PVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQFMPGMRPGAGPPN 487
Query: 338 YMMPYPLQRQNHPGPRVGFRRGAPNMQHHFQQQQQIMQHNGRYMGGVGNMMNRVEASAPQ 517
+MMP+PLQRQ PGPRVGFRRGA NMQ FQQQQ + Q+ R+MGG GN N +EASAPQ
Sbjct: 488 FMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQMLQQNASRFMGGAGNRRNGMEASAPQ 547
Query: 518 GII--PLDASAISHNGSQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQEP 691
GII PL+ASA SHN Q +P L ISKL S LALASP H ++LG+ LYPLVE+QEP
Sbjct: 548 GIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEP 607
Query: 692 VHVAKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLSANPTAVSSVDDQFAPSST 871
+ AKVTGMLLEMDQAEILHLLESPEALKAKV+ ALDVLR SA+P AVSSVDDQFA SS+
Sbjct: 608 ANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSS 667
Query: 872 E* 877
E*
Sbjct: 668 E* 669
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 366 bits (938), Expect = 2e-101
Identities = 188/281 (66%), Positives = 222/281 (79%), Gaps = 7/281 (2%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFS-MRPNVPMG 178
RGFGFVA+S+PEEALRAL+EMNGKMIGRKPLYIA AQRKE+RR HLQ +FS +R PM
Sbjct: 372 RGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPGPMS 431
Query: 179 GFHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGPANYMMPYPL 358
GF HHP GGP GP MY+GQNG MVPSQP+GYG+Q QFMPG+RPG+GP N+++PYPL
Sbjct: 432 GF-HHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGPGNFIVPYPL 490
Query: 359 QRQNHPGPRVGFRRGAPNMQHHFQQQQQIMQHNG----RYMGGVGNMMNRVEASAPQGII 526
QRQ GPR+GFRRGA N+Q H QQQQ+M N RYM G N N +++S PQGI+
Sbjct: 491 QRQPQTGPRMGFRRGATNVQQHI-QQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGIL 549
Query: 527 PLDASAISHNGSQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQEPVHVAK 706
P S + Q+ LLPISKLTS+LA ASPA+ +++LGEQLYPLVE+ EP+HVAK
Sbjct: 550 PPIIPLPIDASSISHQKAPLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAK 609
Query: 707 VTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLSANPT 829
VTGMLLEMDQAEILHL+ESPEALK+KV+ ALDVLRLS +PT
Sbjct: 610 VTGMLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPT 650
>TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING
PROTEIN 8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 672
Score = 211 bits (535), Expect = 1e-054
Identities = 143/302 (47%), Positives = 172/302 (56%), Gaps = 30/302 (9%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFS-MRP-NVPM 175
RG GFVAFS+PEEA RA+ EMNGKMI KPLY+A AQRKE+R+ LQ FS MRP N+P
Sbjct: 367 RGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPP 426
Query: 176 G---GFHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGP-ANYM 343
+P GGP G Q++ GQ M+P QP G+GYQ Q +PG+RPG P N+
Sbjct: 427 AVGPRMQMYPPGGPPMG--QQLFYGQGPPAMIP-QP-GFGYQQQLVPGMRPGGSPMPNFF 482
Query: 344 MP---------YPLQRQNHPGPRVGFRRGA-PNMQHHFQQQQQIMQHNGRYMGGVGNMMN 493
MP Q+Q PG G RRGA P Q QQ M GR +N
Sbjct: 483 MPMMQQGQQQQQQQQQQQRPG---GGRRGALPQPQQPSPMMQQQMHPRGRMYRYPQRDVN 539
Query: 494 RVEASAPQGI-IPLDASA---ISHNGSQNQQRPALLPISKLTSALALASPANHSQILGEQ 661
+ + +P D S+ + H S Q +PI L + LA A+P +LGE
Sbjct: 540 TMPGPTQNMLSVPYDVSSGGGVHHRDSPTSQP---VPIVALATRLANAAPEQQRTMLGEN 596
Query: 662 LYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLSANPTAVSS 841
LYPLVE+ EP AKVTGMLLEMDQ E+LHLLESPEALKAKV A+DVLR A A +
Sbjct: 597 LYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVAQQQAGGA 656
Query: 842 VD 847
D
Sbjct: 657 AD 658
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 201 bits (510), Expect = 8e-052
Identities = 136/291 (46%), Positives = 166/291 (57%), Gaps = 28/291 (9%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFS-MRPNVPMG 178
+G GFVAFS+ EA R LNEMNGKM+G KPLY+A AQRKEERR LQ FS MRP G
Sbjct: 368 KGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPG 427
Query: 179 GFHHHP--TGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGPANYMMPY 352
P TGG A G Q++ GQ ++P QP G+GYQ Q +PG+RP
Sbjct: 428 VGPRMPIFTGG-APGLGQQIFYGQGPPPIIPHQP-GFGYQPQLVPGMRPA------FFGG 479
Query: 353 PLQRQNHPGPRVGFRR-GAPNMQHHFQQQQQIMQ-------HNGRYMGGVGNMMNRVEAS 508
P+ + GPR G RR G M+H QQ MQ RY G NM +
Sbjct: 480 PMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNM---PDGP 536
Query: 509 APQGIIPLDASAISHNGSQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQE 688
P G++P+ A N Q + +L ++LA A+PA +LGE LYPLV++ E
Sbjct: 537 MPGGMVPV---AYDMNVMPYSQP---MSAGQLATSLANATPAQQRTLLGESLYPLVDQIE 590
Query: 689 PVHVAKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLSANPTAVSS 841
H AKVTGMLLEMDQ E+LHLLESPEAL AKV+ ALDVLR P++ S
Sbjct: 591 SEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVNQPSSQGS 641
>TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A)
BINDING 2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 630
Score = 201 bits (510), Expect = 8e-052
Identities = 131/277 (47%), Positives = 163/277 (58%), Gaps = 29/277 (10%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFS------MRP 163
+G GFVAF++PEEA A+++++GKMI KPLY+A AQRKE+RR LQ FS M+P
Sbjct: 358 KGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQP 417
Query: 164 NVPMGGFHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAGPA-NY 340
+V +P GGP G QM+ GQ M+P QP GYGYQ Q +PG+RPG GP ++
Sbjct: 418 SVG-PRMPVYPPGGPGIG--QQMFYGQAPPAMIPPQP-GYGYQQQLVPGMRPGGGPVPSF 473
Query: 341 MMPYPLQRQNHPGPRVGFRRGAPNMQHHFQQQQQIMQHNGRYMGGVGNMMNRVEASAPQG 520
MP +Q PG G RR P H QQQ +MQ + M G M + G
Sbjct: 474 FMPMVQPQQQRPG---GGRR--PGGIQHSQQQNPMMQ---QQMHPRGRMFRYPQGRGGSG 525
Query: 521 IIPLDASAISHNGSQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQEPVHV 700
+P ++ N L I L S L+ A+P +LGE LYPLVE+ E
Sbjct: 526 DVP------PYDMGNNMP----LTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESA 575
Query: 701 AKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLR 811
AKVTGMLLEMDQ E+LHLLESPEALKAKVA A+DVLR
Sbjct: 576 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLR 612
>TAIR9_protein||AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1);
RNA binding / translation initiation factor | chr1:12433356-12434735
REVERSE
Length = 408
Score = 74 bits (181), Expect = 1e-013
Identities = 49/142 (34%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMRPNVPMGG 181
+G GFV FS+ EEA +A+ +MNGKM+G KP+Y++ AQ KE+ + HLQT F+ P P
Sbjct: 263 KGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPPSP--- 319
Query: 182 FHHHPTGGPAGGPHHQMYMGQNGQGMVPSQPMGYGYQLQFMPGVR-----PGAGPANYMM 346
H P P + + GY +Q M G R P N+M+
Sbjct: 320 -HQQPIFSQVVAPATMLSQ--------QTPLRGYNFQPYSMCGSRMPNSCPPISIPNFMV 370
Query: 347 PYPLQRQNH-PGPRVGFRRGAP 409
P P + + P P VG P
Sbjct: 371 PQPFRPTLYPPAPLVGLYGSLP 392
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 65 bits (158), Expect = 5e-011
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = +2
Query: 644 QILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLS 817
Q+LGE L+PLVEK EP K+TGMLLEMD++E+L LL+SPE L +V A +VL+ S
Sbjct: 527 QLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSS 584
Score = 62 bits (150), Expect = 4e-010
Identities = 28/53 (52%), Positives = 38/53 (71%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMR 160
+GFGFV FS+PEEA+ A+ +G+M KPLY+A AQ+KE+R+ LQ F R
Sbjct: 344 KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNR 396
>TAIR9_protein||AT3G19350.1 | Symbols: MPC | MPC (MATERNALLY EXPRESSED PAB
C-TERMINAL); poly(A) binding | chr3:6705526-6705929 FORWARD
Length = 104
Score = 60 bits (145), Expect = 2e-009
Identities = 29/65 (44%), Positives = 43/65 (66%)
Frame = +2
Query: 614 LALASPANHSQILGEQLYPLVEKQEPVHVAKVTGMLLEMDQAEILHLLESPEALKAKVAM 793
LA P ++GE L+ +VE+ EP K+TGM+LE+DQ ++LHLL +P+A K V
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 794 ALDVL 808
A++VL
Sbjct: 83 AMEVL 87
>TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6);
RNA binding / translation initiation factor | chr3:5558676-5560993
REVERSE
Length = 538
Score = 50 bits (119), Expect = 2e-006
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFSMRP 163
+GFGFV FS+ EE+ +A +NG ++ KP+ + A+RKE+R LQ F +P
Sbjct: 344 KGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQP 397
Score = 49 bits (115), Expect = 5e-006
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = +2
Query: 2 RGFGFVAFSSPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTVFS 154
RGFGFV F +PE A +A+ + G +G K L++ A +K+ERR L+ FS
Sbjct: 242 RGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS 292
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,222,801,766
Number of Sequences: 33410
Number of Extensions: 9222801766
Number of Successful Extensions: 317284492
Number of sequences better than 0.0: 0
|
