BLASTX 7.6.2
Query= UN17656 /QuerySize=1029
(1028 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G01530.1 | Symbols: | chlorophyll A-B binding... 537 6e-153
TAIR9_protein||AT3G08940.2 | Symbols: LHCB4.2 | LHCB4.2 (light h... 527 4e-150
TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light h... 392 2e-109
TAIR9_protein||AT3G08940.1 | Symbols: LHCB4.2 | LHCB4.2 (light h... 302 2e-082
TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB... 114 9e-026
TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB... 114 9e-026
TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1... 114 9e-026
TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; ... 114 1e-025
TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; ... 114 1e-025
TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVE... 100 2e-021
TAIR9_protein||AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | LHCB3 (LI... 92 6e-019
TAIR9_protein||AT1G76570.1 | Symbols: | chlorophyll A-B binding... 86 3e-017
TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; ... 84 1e-016
TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; ... 84 1e-016
TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | ... 82 6e-016
TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment bin... 79 3e-015
TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment bin... 79 3e-015
TAIR9_protein||AT1G61520.1 | Symbols: LHCA3 | LHCA3; chlorophyll... 75 6e-014
TAIR9_protein||AT1G61520.2 | Symbols: LHCA3 | LHCA3; chlorophyll... 75 6e-014
TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT... 69 3e-012
>TAIR9_protein||AT5G01530.1 | Symbols: | chlorophyll A-B binding protein CP29
(LHCB4) | chr5:209084-210243 FORWARD
Length = 291
Score = 537 bits (1382), Expect = 6e-153
Identities = 270/289 (93%), Positives = 274/289 (94%), Gaps = 2/289 (0%)
Frame = -3
Query: 969 MAAT-PTAAAASSIMGTRVVPDIHSGSGRITARFGFGKKKAAPKKT-KTTVTSDRPLWYP 796
MAAT AAAASSIMGTRV P IH GSGR TA FGFGKKKAAPKK+ K TVT+DRPLWYP
Sbjct: 1 MAATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYP 60
Query: 795 GAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEAAPK 616
GA SP+WLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTE A K
Sbjct: 61 GAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAK 120
Query: 615 STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 436
STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL
Sbjct: 121 STPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 180
Query: 435 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKMAQLQL 256
GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLA+DPEK AQLQL
Sbjct: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQL 240
Query: 255 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 109
AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
>TAIR9_protein||AT3G08940.2 | Symbols: LHCB4.2 | LHCB4.2 (light harvesting
complex PSII); chlorophyll binding | chr3:2717717-2718665 FORWARD
Length = 288
Score = 527 bits (1357), Expect = 4e-150
Identities = 262/287 (91%), Positives = 270/287 (94%), Gaps = 1/287 (0%)
Frame = -3
Query: 969 MAATPTAAAASSIMGTRVVPDIHSGSGRITARFGFGKKKAAPKKTKTTVTSDRPLWYPGA 790
MAAT TAAAASSIMGTRVV DI S S R TARFGFG KKA+PKK K TV SDRPLW+PGA
Sbjct: 1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAK-TVISDRPLWFPGA 59
Query: 789 KSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEAAPKST 610
KSPE+LDGSLVGDYGFDPFGLGKPAEYLQFD+DSLDQNLAKNL G+VIGTRTE PKST
Sbjct: 60 KSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKST 119
Query: 609 PFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 430
PFQPYSEVFG+QRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKVELVDGSSYLGQ
Sbjct: 120 PFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQ 179
Query: 429 PLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKMAQLQLAE 250
PLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDP K AQLQLAE
Sbjct: 180 PLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAE 239
Query: 249 IKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 109
IKHARLAMV FLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS
Sbjct: 240 IKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
>TAIR9_protein||AT2G40100.1 | Symbols: LHCB4.3 | LHCB4.3 (light harvesting
complex PSII); chlorophyll binding | chr2:16745884-16747190 FORWARD
Length = 277
Score = 392 bits (1006), Expect = 2e-109
Identities = 197/274 (71%), Positives = 227/274 (82%), Gaps = 7/274 (2%)
Frame = -3
Query: 963 ATPTAAAASSIMGTRVVPDIHSGSGRITARFG--FGKKKAAP---KKTKTTVTSDRPLWY 799
AT TAAAAS I G R + D G+GR+ ARFG FGKKK AP K + DR +W+
Sbjct: 2 ATTTAAAASGIFGIR-IQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWF 60
Query: 798 PGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEAAP 619
PGA PEWLDGS++GD GFDPFGLGKPAEYLQ+D D LDQNLAKN+AGD+IG E +
Sbjct: 61 PGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEI 120
Query: 618 KSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSY 439
K TPFQPY+EVFGIQRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELV+GSSY
Sbjct: 121 KPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSY 180
Query: 438 LGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKMAQLQ 259
LGQPLPFS++TLIWIEVLV+GYIEFQRN+ELD EKR+YPGG +FDPLGLA+DPEK+ L+
Sbjct: 181 LGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLK 239
Query: 258 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 157
LAEIKH+RLAMVAFL FA+QAA TGKGP++ AT
Sbjct: 240 LAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273
>TAIR9_protein||AT3G08940.1 | Symbols: LHCB4.2 | LHCB4.2 (light harvesting
complex PSII); chlorophyll binding | chr3:2717717-2718400 FORWARD
Length = 228
Score = 302 bits (773), Expect = 2e-082
Identities = 152/184 (82%), Positives = 161/184 (87%), Gaps = 1/184 (0%)
Frame = -3
Query: 969 MAATPTAAAASSIMGTRVVPDIHSGSGRITARFGFGKKKAAPKKTKTTVTSDRPLWYPGA 790
MAAT TAAAASSIMGTRVV DI S S R TARFGFG KKA+PKK K TV SDRPLW+PGA
Sbjct: 1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAK-TVISDRPLWFPGA 59
Query: 789 KSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEEAAPKST 610
KSPE+LDGSLVGDYGFDPFGLGKPAEYLQFD+DSLDQNLAKNL G+VIGTRTE PKST
Sbjct: 60 KSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKST 119
Query: 609 PFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 430
PFQPYSEVFG+QRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKV + SS L
Sbjct: 120 PFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVSPLFFSSLLRL 179
Query: 429 PLPF 418
L F
Sbjct: 180 CLAF 183
>TAIR9_protein||AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | CAB3 (CHLOROPHYLL
A/B BINDING PROTEIN 3); chlorophyll binding | chr1:10472443-10473246
REVERSE
Length = 268
Score = 114 bits (285), Expect = 9e-026
Identities = 74/161 (45%), Positives = 96/161 (59%), Gaps = 16/161 (9%)
Frame = -3
Query: 573 RFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAGKVELVDGS-SYLGQPLPF 418
R RE E+IH RWAML LG + E L GV W AG DG YLG P
Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 153
Query: 417 SISTL--IW-IEVLVIGYIEFQR---NAEL-DSEKRLYPGGKFFDPLGLASDPEKMAQLQ 259
++ IW +V+++G +E R N L ++E LYPGG FDPLGLA+DPE A+L+
Sbjct: 154 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELK 212
Query: 258 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 136
+ E+K+ RLAM + GF VQA TGKGP+ N A HL+DP++
Sbjct: 213 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
>TAIR9_protein||AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | CAB2 (CHLOROPHYLL
A/B-BINDING PROTEIN 2); chlorophyll binding | chr1:10475089-10475892
REVERSE
Length = 268
Score = 114 bits (285), Expect = 9e-026
Identities = 74/161 (45%), Positives = 96/161 (59%), Gaps = 16/161 (9%)
Frame = -3
Query: 573 RFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAGKVELVDGS-SYLGQPLPF 418
R RE E+IH RWAML LG + E L GV W AG DG YLG P
Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 153
Query: 417 SISTL--IW-IEVLVIGYIEFQR---NAEL-DSEKRLYPGGKFFDPLGLASDPEKMAQLQ 259
++ IW +V+++G +E R N L ++E LYPGG FDPLGLA+DPE A+L+
Sbjct: 154 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELK 212
Query: 258 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 136
+ E+K+ RLAM + GF VQA TGKGP+ N A HL+DP++
Sbjct: 213 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
>TAIR9_protein||AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | CAB1
(CHLOROPHYLL A/B BINDING PROTEIN 1); chlorophyll binding |
chr1:10478071-10478874 FORWARD
Length = 268
Score = 114 bits (285), Expect = 9e-026
Identities = 74/161 (45%), Positives = 96/161 (59%), Gaps = 16/161 (9%)
Frame = -3
Query: 573 RFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAGKVELVDGS-SYLGQPLPF 418
R RE E+IH RWAML LG + E L GV W AG DG YLG P
Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 153
Query: 417 SISTL--IW-IEVLVIGYIEFQR---NAEL-DSEKRLYPGGKFFDPLGLASDPEKMAQLQ 259
++ IW +V+++G +E R N L ++E LYPGG FDPLGLA+DPE A+L+
Sbjct: 154 HAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELK 212
Query: 258 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 136
+ E+K+ RLAM + GF VQA TGKGP+ N A HL+DP++
Sbjct: 213 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
>TAIR9_protein||AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | LHB1B1; chlorophyll
binding | chr2:14524818-14525618 FORWARD
Length = 267
Score = 114 bits (284), Expect = 1e-025
Identities = 74/161 (45%), Positives = 95/161 (59%), Gaps = 16/161 (9%)
Frame = -3
Query: 573 RFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAGKVELVDGS-SYLGQPLPF 418
R RE E+IH RWAML LG + E L GV W AG DG YLG P
Sbjct: 93 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 152
Query: 417 SISTL--IW-IEVLVIGYIEFQRNAE----LDSEKRLYPGGKFFDPLGLASDPEKMAQLQ 259
++ IW +V+++G +E R A ++E LYPGG FDPLGLA+DPE A+L+
Sbjct: 153 HAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELK 211
Query: 258 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 136
+ E+K+ RLAM + GF VQA TGKGPL N A HL+DP++
Sbjct: 212 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>TAIR9_protein||AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | LHB1B2; chlorophyll
binding | chr2:14522716-14523513 REVERSE
Length = 266
Score = 114 bits (284), Expect = 1e-025
Identities = 74/161 (45%), Positives = 95/161 (59%), Gaps = 16/161 (9%)
Frame = -3
Query: 573 RFRECELIHGRWAMLATLGALSVEWL--TGV-----TWQDAGKVELVDGS-SYLGQPLPF 418
R RE E+IH RWAML LG + E L GV W AG DG YLG P
Sbjct: 92 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLV 151
Query: 417 SISTL--IW-IEVLVIGYIEFQRNAE----LDSEKRLYPGGKFFDPLGLASDPEKMAQLQ 259
++ IW +V+++G +E R A ++E LYPGG FDPLGLA+DPE A+L+
Sbjct: 152 HAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELK 210
Query: 258 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 136
+ E+K+ RLAM + GF VQA TGKGPL N A HL+DP++
Sbjct: 211 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>TAIR9_protein||AT4G10340.1 | Symbols: LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX
OF PHOTOSYSTEM II 5); chlorophyll binding | chr4:6408200-6409496
FORWARD
Length = 281
Score = 100 bits (248), Expect = 2e-021
Identities = 56/123 (45%), Positives = 80/123 (65%), Gaps = 5/123 (4%)
Frame = -3
Query: 483 WQDAGKVELVDGS--SYLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGK 313
W G + L+DG+ +Y G+ +P ++ + EV+++G E+ R LD E +L+PGG
Sbjct: 147 WFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGP 205
Query: 312 FFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 133
FDPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP
Sbjct: 206 -FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGN 264
Query: 132 TII 124
++
Sbjct: 265 NLL 267
>TAIR9_protein||AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | LHCB3 (LIGHT-HARVESTING
CHLOROPHYLL B-BINDING PROTEIN 3); structural molecule |
chr5:22038424-22039383 FORWARD
Length = 266
Score = 92 bits (226), Expect = 6e-019
Identities = 54/122 (44%), Positives = 71/122 (58%), Gaps = 7/122 (5%)
Frame = -3
Query: 483 WQDAGKVELVDGS-SYLGQP---LPFSISTLIWIEVLVIGYIEFQRNAELD---SEKRLY 325
W AG +G YLG P SI ++ +V+++G +E R LD LY
Sbjct: 129 WFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGNDLY 188
Query: 324 PGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 145
PGG++FDPLGLA DP A+L++ EIK+ RLAM + GF VQA TGKGPL N HL +
Sbjct: 189 PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDN 248
Query: 144 PL 139
P+
Sbjct: 249 PV 250
>TAIR9_protein||AT1G76570.1 | Symbols: | chlorophyll A-B binding family protein
| chr1:28729132-28730754 FORWARD
Length = 328
Score = 86 bits (211), Expect = 3e-017
Identities = 40/68 (58%), Positives = 48/68 (70%)
Frame = -3
Query: 327 YPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 148
YPGG FDPL L+ DP L++ EIK+ RLAMVA+LGF QAA TGKGP+ N H+S
Sbjct: 255 YPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVS 314
Query: 147 DPLHTTII 124
DPLH +I
Sbjct: 315 DPLHNNLI 322
>TAIR9_protein||AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | LHCB2.1; chlorophyll
binding | chr2:1823449-1824331 REVERSE
Length = 266
Score = 84 bits (206), Expect = 1e-016
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 14/125 (11%)
Frame = -3
Query: 483 WQDAGKVELVDGS-SYLGQPLPFSISTL--IW-IEVLVIGYIEFQR------NAELDSEK 334
W AG +G YLG P ++ IW ++V+++G+IE R LD
Sbjct: 130 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP-- 187
Query: 333 RLYPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 154
LYPGG FDPL LA DPE ++L++ E+K+ RLAM + GF VQA TGKGP+ N H
Sbjct: 188 -LYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDH 245
Query: 153 LSDPL 139
L+DP+
Sbjct: 246 LADPV 250
>TAIR9_protein||AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | LHCB2.2; chlorophyll
binding | chr2:1799436-1800329 REVERSE
Length = 266
Score = 84 bits (206), Expect = 1e-016
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 14/125 (11%)
Frame = -3
Query: 483 WQDAGKVELVDGS-SYLGQPLPFSISTL--IW-IEVLVIGYIEFQR------NAELDSEK 334
W AG +G YLG P ++ IW ++V+++G+IE R LD
Sbjct: 130 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGPLGEGLDP-- 187
Query: 333 RLYPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 154
LYPGG FDPL LA DPE ++L++ E+K+ RLAM + GF VQA TGKGP+ N H
Sbjct: 188 -LYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDH 245
Query: 153 LSDPL 139
L+DP+
Sbjct: 246 LADPV 250
>TAIR9_protein||AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | LHCB2.3;
chlorophyll binding | chr3:10256002-10256921 FORWARD
Length = 267
Score = 82 bits (200), Expect = 6e-016
Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 14/125 (11%)
Frame = -3
Query: 483 WQDAGKVELVDGS-SYLGQPLPFSISTL--IW-IEVLVIGYIEFQR------NAELDSEK 334
W AG +G YLG P ++ IW +V+++G+IE R LD
Sbjct: 131 WFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGGPLGEGLDP-- 188
Query: 333 RLYPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATH 154
LYPGG FDPL LA DPE ++L++ E+K+ RLAM + GF VQA TGKGP+ N H
Sbjct: 189 -LYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDH 246
Query: 153 LSDPL 139
++DP+
Sbjct: 247 IADPV 251
>TAIR9_protein||AT1G45474.1 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 79 bits (194), Expect = 3e-015
Identities = 42/87 (48%), Positives = 53/87 (60%)
Frame = -3
Query: 378 GYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQ 199
G F A L+ + YPGG +PLGLA D + +L EIK+ RLAM+A LGF VQ
Sbjct: 164 GSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQ 223
Query: 198 AAATGKGPLNNWATHLSDPLHTTIIDT 118
A+ T GP++N HLS+P H TII T
Sbjct: 224 ASVTHTGPIDNLVEHLSNPWHKTIIQT 250
>TAIR9_protein||AT1G45474.2 | Symbols: LHCA5 | LHCA5; pigment binding |
chr1:17179353-17180439 FORWARD
Length = 257
Score = 79 bits (194), Expect = 3e-015
Identities = 42/87 (48%), Positives = 53/87 (60%)
Frame = -3
Query: 378 GYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQ 199
G F A L+ + YPGG +PLGLA D + +L EIK+ RLAM+A LGF VQ
Sbjct: 164 GSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQ 223
Query: 198 AAATGKGPLNNWATHLSDPLHTTIIDT 118
A+ T GP++N HLS+P H TII T
Sbjct: 224 ASVTHTGPIDNLVEHLSNPWHKTIIQT 250
>TAIR9_protein||AT1G61520.1 | Symbols: LHCA3 | LHCA3; chlorophyll binding |
chr1:22700152-22701149 FORWARD
Length = 274
Score = 75 bits (183), Expect = 6e-014
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = -3
Query: 327 YPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 148
YPGG FF+PLG D + + +L+L E+K+ RLAM+A LG+ +Q TG GP N HL+
Sbjct: 200 YPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 259
Query: 147 DPLHTTII 124
DP++ ++
Sbjct: 260 DPVNNNVL 267
>TAIR9_protein||AT1G61520.2 | Symbols: LHCA3 | LHCA3; chlorophyll binding |
chr1:22700493-22701149 FORWARD
Length = 219
Score = 75 bits (183), Expect = 6e-014
Identities = 31/68 (45%), Positives = 46/68 (67%)
Frame = -3
Query: 327 YPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 148
YPGG FF+PLG D + + +L+L E+K+ RLAM+A LG+ +Q TG GP N HL+
Sbjct: 145 YPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 204
Query: 147 DPLHTTII 124
DP++ ++
Sbjct: 205 DPVNNNVL 212
>TAIR9_protein||AT3G47470.1 | Symbols: LHCA4, CAB4 | LHCA4 (LIGHT-HARVESTING
CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4); chlorophyll binding |
chr3:17493622-17494773 REVERSE
Length = 252
Score = 69 bits (168), Expect = 3e-012
Identities = 37/72 (51%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Frame = -3
Query: 327 YPGGKFFDPLGLASDPEKMAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 148
YPGG F+PL A E + E+ + RLAM+AFLGF VQ TGKGP N HLS
Sbjct: 185 YPGG-IFNPLNFAPTQEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLS 239
Query: 147 DPLHTTIIDTFS 112
DP H TI+ TF+
Sbjct: 240 DPWHNTIVQTFN 251
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,265,933,573
Number of Sequences: 33410
Number of Extensions: 9265933573
Number of Successful Extensions: 317313259
Number of sequences better than 0.0: 0
|
