BLASTX 7.6.2
Query= UN18722 /QuerySize=1224
(1223 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 P... 119 4e-026
sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 P... 92 7e-018
sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-... 90 3e-017
sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapie... 69 5e-011
sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 P... 69 5e-011
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=B... 59 5e-008
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=H... 59 5e-008
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=M... 59 5e-008
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=P... 59 5e-008
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 119 bits (298), Expect = 4e-026
Identities = 62/146 (42%), Positives = 95/146 (65%), Gaps = 4/146 (2%)
Frame = -3
Query: 948 DPSTCRSVYVGNIHIQVTEPLLQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAAL 775
D R++YVGN+ VTE L+ ++F+ GP +S K+I + S+ Y FV +++ R AA
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63
Query: 774 AILSLNGRHLFGQPIKVNW-TYATGQREDTSSHFNIFVGDLSPEVTDAALYQIFSVFSTC 598
A+ ++NGR + G+ +KVNW T + Q++DTS+HF++FVGDLSPE+T + F+ F
Sbjct: 64 ALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
Query: 597 SDARVMWGQKTGRSRALGLFPSAINR 520
SDARV+ TG+S+ G F S N+
Sbjct: 124 SDARVVKDMATGKSKGYG-FVSFYNK 148
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 92 bits (227), Expect = 7e-018
Identities = 47/110 (42%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Frame = -3
Query: 846 SKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNW-TYATGQREDTSSHFNI 670
S L Y FV +++ R AA A+ ++NGR + G+ +KVNW T + Q++DTS+HF++
Sbjct: 57 SVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHV 116
Query: 669 FVGDLSPEVTDAALYQIFSVFSTCSDARVMWGQKTGRSRALGLFPSAINR 520
FVGDLSPE+T + F+ F SDARV+ TG+S+ G F S N+
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG-FVSFYNK 165
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein
PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3
Length = 453
Score = 90 bits (222), Expect = 3e-017
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
Frame = -3
Query: 978 VPSGNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEIFTSTGPVESSKLI--RKDKS-SYGF 808
VP+ + G + S R +YVGN+ +TE +L++ F GP+ + K++ + +K+ +Y F
Sbjct: 61 VPANAITGGRETSD-RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAF 119
Query: 807 VHYFDRRSAALAILSLNGRHLFGQPIKVNWTYATGQREDTSSHFNIFVGDLSPEVTDAAL 628
V Y A +A+ +LNG+ + +K+NW + + Q+ + FN+FVGDL+ V D L
Sbjct: 120 VEYHQSHDANIALQTLNGKQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETL 178
Query: 627 YQIFSVFSTCSDARVMWGQKTGRSRALG 544
F F + VMW +TG SR G
Sbjct: 179 RNAFKDFPSYLSGHVMWDMQTGSSRGYG 206
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1
SV=3
Length = 386
Score = 69 bits (168), Expect = 5e-011
Identities = 34/87 (39%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Frame = -3
Query: 933 RSVYVGNIHIQVTEPLLQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSL 760
+++YVGN+ VTE L+ ++F+ GP ++ K+I + Y FV + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 759 NGRHLFGQPIKVNW-TYATGQREDTSS 682
NGR + G+ +KVNW T + Q++DTSS
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSS 93
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 69 bits (168), Expect = 5e-011
Identities = 34/87 (39%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Frame = -3
Query: 933 RSVYVGNIHIQVTEPLLQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSL 760
+++YVGN+ VTE L+ ++F+ GP ++ K+I + Y FV + + R AA A+ ++
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 759 NGRHLFGQPIKVNW-TYATGQREDTSS 682
NGR + G+ +KVNW T + Q++DTSS
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSS 93
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus
GN=CSTF2 PE=2 SV=1
Length = 572
Score = 59 bits (142), Expect = 5e-008
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Frame = -3
Query: 957 PGFDPSTCRSVYVGNIHIQVTEPLLQEIFTSTGPVESSKLIRKDKS----SYGFVHYFDR 790
P D S RSV+VGNI + TE L++IF+ GPV S +L+ ++ YGF Y D+
Sbjct: 9 PAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67
Query: 789 RSAALAILSLNGRHLFGQPIKVNWTYATGQREDTSS 682
+A A+ +LNGR G+ ++V+ + +E+ S
Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens
GN=CSTF2 PE=1 SV=1
Length = 577
Score = 59 bits (142), Expect = 5e-008
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Frame = -3
Query: 957 PGFDPSTCRSVYVGNIHIQVTEPLLQEIFTSTGPVESSKLIRKDKS----SYGFVHYFDR 790
P D S RSV+VGNI + TE L++IF+ GPV S +L+ ++ YGF Y D+
Sbjct: 9 PAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67
Query: 789 RSAALAILSLNGRHLFGQPIKVNWTYATGQREDTSS 682
+A A+ +LNGR G+ ++V+ + +E+ S
Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus
GN=Cstf2 PE=1 SV=2
Length = 580
Score = 59 bits (142), Expect = 5e-008
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Frame = -3
Query: 957 PGFDPS---TCRSVYVGNIHIQVTEPLLQEIFTSTGPVESSKLIRKDKS----SYGFVHY 799
P DP+ + RSV+VGNI + TE L++IF+ GPV S +L+ ++ YGF Y
Sbjct: 5 PVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64
Query: 798 FDRRSAALAILSLNGRHLFGQPIKVNWTYATGQREDTSS 682
D+ +A A+ +LNGR G+ ++V+ + +E+ S
Sbjct: 65 QDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 103
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii
GN=CSTF2 PE=2 SV=1
Length = 577
Score = 59 bits (142), Expect = 5e-008
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Frame = -3
Query: 957 PGFDPSTCRSVYVGNIHIQVTEPLLQEIFTSTGPVESSKLIRKDKS----SYGFVHYFDR 790
P D S RSV+VGNI + TE L++IF+ GPV S +L+ ++ YGF Y D+
Sbjct: 9 PAVDRS-LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67
Query: 789 RSAALAILSLNGRHLFGQPIKVNWTYATGQREDTSS 682
+A A+ +LNGR G+ ++V+ + +E+ S
Sbjct: 68 ETALSAMRNLNGREFSGRALRVDNAASEKNKEELKS 103
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,378,909,851
Number of Sequences: 518415
Number of Extensions: 78378909851
Number of Successful Extensions: 523441567
Number of sequences better than 0.0: 0
|
