BLASTX 7.6.2
Query= UN18852 /QuerySize=1109
(1108 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G09040.1 | Symbols: | RNA recognition motif (... 435 3e-122
TAIR9_protein||AT4G09040.2 | Symbols: | RNA recognition motif (... 359 2e-099
TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotei... 143 2e-034
TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotei... 80 2e-015
TAIR9_protein||AT5G19350.1 | Symbols: | RNA-binding protein 45 ... 52 5e-007
TAIR9_protein||AT5G19350.2 | Symbols: | RNA-binding protein 45 ... 52 5e-007
TAIR9_protein||AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-b... 50 2e-006
>TAIR9_protein||AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795075-5797315 REVERSE
Length = 305
Score = 435 bits (1118), Expect = 3e-122
Identities = 228/284 (80%), Positives = 245/284 (86%), Gaps = 17/284 (5%)
Frame = +2
Query: 29 MALLRLPPISLQFLGHQSEHKTPNPGVSLANFSLPWSTPPSVSRLHL---------SKPR 181
MALLRLP ISLQ LGH+S K PNP V+ N SL ST PS+ RLH +K R
Sbjct: 1 MALLRLPGISLQILGHKSNQKNPNPNVAFTNHSLSLST-PSLCRLHRHATFPDSIPAKSR 59
Query: 182 NLTSCFSATIQEPILESSSSSS-------EEISKTRLIAQNVPWTSTPEDIRSLFEKYGN 340
NLTS FS T QEP+LESSSSSS EEISKTRLIAQNVPWTSTPEDIRSLFEKYG+
Sbjct: 60 NLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGS 119
Query: 341 VVDVEMSMHKKERNRGLVFIEMASPEEAASALQALESYEYEGRRLKVAYAKAKKKKTYAP 520
V+D+EMSMHKKERNRGLVFIEMASPEEAA+AL++LES EYEGRRLKV YAK KKKKTYAP
Sbjct: 120 VIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAP 179
Query: 521 REKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK 700
RE P+PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK
Sbjct: 180 RETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK 239
Query: 701 TKKMADAALLEFQGKDFMGRPIRLARSKQFVKLQAKEGLQPPDE 832
TKK A+AAL+EFQGKDF+GRPIRLA+SKQFVKLQAKEGLQPP+E
Sbjct: 240 TKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEE 283
>TAIR9_protein||AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795075-5797193 REVERSE
Length = 245
Score = 359 bits (921), Expect = 2e-099
Identities = 181/218 (83%), Positives = 200/218 (91%), Gaps = 1/218 (0%)
Frame = +2
Query: 179 RNLTSCFSATIQEPILESSSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKYGNVVDVEM 358
R+++ S+ IQ+P ++ ISKTRLIAQNVPWTSTPEDIRSLFEKYG+V+D+EM
Sbjct: 7 RDVSRLNSSKIQKPHFVLLHHNT-RISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEM 65
Query: 359 SMHKKERNRGLVFIEMASPEEAASALQALESYEYEGRRLKVAYAKAKKKKTYAPREKPTP 538
SMHKKERNRGLVFIEMASPEEAA+AL++LES EYEGRRLKV YAK KKKKTYAPRE P+P
Sbjct: 66 SMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSP 125
Query: 539 VPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMAD 718
VPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKK A+
Sbjct: 126 VPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAE 185
Query: 719 AALLEFQGKDFMGRPIRLARSKQFVKLQAKEGLQPPDE 832
AAL+EFQGKDF+GRPIRLA+SKQFVKLQAKEGLQPP+E
Sbjct: 186 AALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEE 223
>TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative | chr2:14898341-14899590
FORWARD
Length = 309
Score = 143 bits (360), Expect = 2e-034
Identities = 81/199 (40%), Positives = 120/199 (60%), Gaps = 7/199 (3%)
Frame = +2
Query: 188 TSCFSATIQEPILESSSSSSEEISKTRLIAQNVPWTSTPEDIRSLFEKYGNVVDVEMSMH 367
TS T QE E + +S+ K +L N+PW+ + DI LF + G V +VE+
Sbjct: 73 TSADEETSQEEKTEETQNSN---LKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 368 KKERNRGLVFIEMASPEEAASALQALESYEYEGRRLKVAYAKAKKKKT-YAPREKPTPVP 544
K +NRG F+ MAS EEA +A+ ++++ GR + V++A+ KK T +P + P+P P
Sbjct: 130 KDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAP 189
Query: 545 ---TFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMA 715
L+V+NLA++AR+ HL+E F A N VS V+F + RSSGYGFVSF T++ A
Sbjct: 190 GDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEA 249
Query: 716 DAALLEFQGKDFMGRPIRL 772
+ A+ + GK+ MGRPI L
Sbjct: 250 ENAITKLNGKEIMGRPITL 268
>TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr1:22093678-22094540
REVERSE
Length = 259
Score = 80 bits (196), Expect = 2e-015
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Frame = +2
Query: 263 TRLIAQNVPWTSTPEDIRSLFEKYGNVVDVEMSMHKKE-RNRGLVFIEMASPEEAASALQ 439
T+L N+P+ + + + + N VE+ ++ ++RG F+ M++ E+ +
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 440 ALESYEYEGRRLKVAYAKAKKKKTYAPREKPT-PVPTFNLFVANLAFEARAKHLKEFFDA 616
L+ EY GR LKV +A K P ++P P LFV NL++ ++ L F
Sbjct: 145 NLDGTEYLGRALKVNFADKPK-----PNKEPLYPETEHKLFVGNLSWTVTSESLAGAF-R 198
Query: 617 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIR--LARSKQF 790
+ G+VV V+F + RS GYGFV + +K + AL G + GR IR LA+ K+F
Sbjct: 199 ECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKKF 258
>TAIR9_protein||AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45),
putative | chr5:6518978-6521295 FORWARD
Length = 426
Score = 52 bits (124), Expect = 5e-007
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Frame = +2
Query: 311 IRSLFEKYGNVVDVEMSMHK-KERNRGLVFIEMASPEEAASALQALESYEYEGRRLKVAY 487
+ S F + G +V V++ +K + G FIE S A LQ + G L
Sbjct: 40 LTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRL 99
Query: 488 AKAKKKKTYAPREKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPR 667
A ++ +K P ++FV +LA + L+E F +V +V+ +
Sbjct: 100 NWA----SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTG 155
Query: 668 RSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIRLA 775
RS GYGFV F + + A+ E G RP+R++
Sbjct: 156 RSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRIS 191
>TAIR9_protein||AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45),
putative | chr5:6518978-6521295 FORWARD
Length = 422
Score = 52 bits (124), Expect = 5e-007
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Frame = +2
Query: 311 IRSLFEKYGNVVDVEMSMHK-KERNRGLVFIEMASPEEAASALQALESYEYEGRRLKVAY 487
+ S F + G +V V++ +K + G FIE S A LQ + G L
Sbjct: 40 LTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRL 99
Query: 488 AKAKKKKTYAPREKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPR 667
A ++ +K P ++FV +LA + L+E F +V +V+ +
Sbjct: 100 NWA----SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTG 155
Query: 668 RSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIRLA 775
RS GYGFV F + + A+ E G RP+R++
Sbjct: 156 RSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRIS 191
>TAIR9_protein||AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-binding protein
45A); RNA binding | chr5:22295412-22298126 FORWARD
Length = 388
Score = 50 bits (118), Expect = 2e-006
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Frame = +2
Query: 311 IRSLFEKYGNVVDVEMSMHK-KERNRGLVFIEMASPEEAASALQALESYEYEGR----RL 475
I S+F + G ++ +K ++ G FIE S A LQ RL
Sbjct: 76 IMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRL 135
Query: 476 KVAYAKAKKKKTYAPREKPTPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFH 655
A A A +K+ T P +FV +LA E L + F G+V +V+
Sbjct: 136 NWAQAGAGEKRF------QTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLD 189
Query: 656 ENPRRSSGYGFVSFKTKKMADAALLEFQGKDFMGRPIRL--ARSKQFVKLQ 802
RS GYGFV F + A+ E G+ RP+R+ A +K + +Q
Sbjct: 190 RTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,794,778,008
Number of Sequences: 33410
Number of Extensions: 9794778008
Number of Successful Extensions: 327960547
Number of sequences better than 0.0: 0
|
