BLASTX 7.6.2
Query= UN19080 /QuerySize=1648
(1647 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplast... 497 2e-139
sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas... 432 5e-120
sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast... 432 5e-120
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas... 425 6e-118
sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondr... 407 1e-112
sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondri... 404 9e-112
sp|Q8L6J2|RPO2A_TOBAC DNA-directed RNA polymerase 2A (Fragment) ... 402 4e-111
sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplast... 402 4e-111
sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplas... 402 6e-111
sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondri... 371 8e-102
sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplast... 368 7e-101
sp|Q8L6J4|RPO1A_TOBAC DNA-directed RNA polymerase 1A (Fragment) ... 258 1e-067
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic
OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1
Length = 993
Score = 497 bits (1277), Expect = 2e-139
Identities = 245/254 (96%), Positives = 250/254 (98%)
Frame = +3
Query: 432 EEGSNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIS 611
++ S+KDPESNPTAALAKILI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVI+
Sbjct: 740 KKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIT 799
Query: 612 DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQ 791
DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRW TPLGLPVVQ
Sbjct: 800 DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQ 859
Query: 792 PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL 971
PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL
Sbjct: 860 PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL 919
Query: 972 NFAGVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGD 1151
NFAGVHDSYWTHACDVDTMNRILREKFVELY+TPILEDLLQSFQESYPNLVFPPVPKRGD
Sbjct: 920 NFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGD 979
Query: 1152 FDLKEVLKSHYFFN 1193
FDLKEVLKS YFFN
Sbjct: 980 FDLKEVLKSQYFFN 993
Score = 290 bits (742), Expect = 2e-077
Identities = 140/148 (94%), Positives = 144/148 (97%)
Frame = +1
Query: 1 LEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDDIIDSAENAIHGKR 180
LEFAEGRPLGKSGL+WLKIHLANLYAGGVEKLSHD RLAFVENHLDDI+DSAEN IHGKR
Sbjct: 596 LEFAEGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKR 655
Query: 181 WWLKAEDPFQCLAACVILGQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 360
WWLKAEDPFQCLAACVIL QALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA
Sbjct: 656 WWLKAEDPFQCLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 715
Query: 361 VNLVAGEKPADVYSEISLRVHEIMKKEA 444
VNLVAGEKPADVYSEIS RVHEIMKK++
Sbjct: 716 VNLVAGEKPADVYSEISRRVHEIMKKDS 743
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1
Length = 977
Score = 432 bits (1109), Expect = 5e-120
Identities = 207/251 (82%), Positives = 233/251 (92%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
S KDP ++P A LAK+LI+QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+I D+R
Sbjct: 727 SIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDR 786
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
+LF A+CY+AKVTLAALGE+F+AAR M+WLGDCAK+IAS+N PVRWTTPLGLPVVQPY
Sbjct: 787 LLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYF 846
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+++RH+IRTSLQVLALQREG+TV+VRKQRTAFPPNFVHSLDG+HMMMTAVACR+AGL FA
Sbjct: 847 KTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFA 906
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDS+WTHACDVD MNRILREKFVELYS PILEDLL+SFQ SYP L FPP+PKRGDFDL
Sbjct: 907 GVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDL 966
Query: 1161 KEVLKSHYFFN 1193
EVL+S YFFN
Sbjct: 967 VEVLESPYFFN 977
Score = 250 bits (636), Expect = 4e-065
Identities = 116/150 (77%), Positives = 135/150 (90%)
Frame = +1
Query: 1 LEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDDIIDSAENAIHGKR 180
LEFAEGRPLGKSGL WLKIHLA+LYAGG+EKL +D RLAFVENH+DDI+DSA N ++G R
Sbjct: 580 LEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNR 639
Query: 181 WWLKAEDPFQCLAACVILGQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 360
WWL AEDPFQCLAAC+ L +ALKS SP++V SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 640 WWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAA 699
Query: 361 VNLVAGEKPADVYSEISLRVHEIMKKEAIR 450
VNLVAG+KPADVY+EI+LRV I++ ++I+
Sbjct: 700 VNLVAGDKPADVYTEIALRVDHIIRGDSIK 729
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana
sylvestris GN=RPOT3 PE=2 SV=1
Length = 977
Score = 432 bits (1109), Expect = 5e-120
Identities = 207/251 (82%), Positives = 233/251 (92%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
S KDP ++P A LAK+LI+QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+I D+R
Sbjct: 727 SIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDR 786
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
+LF A+CY+AKVTLAALGE+F+AAR M+WLGDCAK+IAS+N PVRWTTPLGLPVVQPY
Sbjct: 787 LLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYF 846
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+++RH+IRTSLQVLALQREG+TV+VRKQRTAFPPNFVHSLDG+HMMMTAVACR+AGL FA
Sbjct: 847 KTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFA 906
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDS+WTHACDVD MNRILREKFVELYS PILEDLL+SFQ SYP L FPP+PKRGDFDL
Sbjct: 907 GVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDL 966
Query: 1161 KEVLKSHYFFN 1193
EVL+S YFFN
Sbjct: 967 VEVLESPYFFN 977
Score = 250 bits (636), Expect = 4e-065
Identities = 116/150 (77%), Positives = 135/150 (90%)
Frame = +1
Query: 1 LEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDDIIDSAENAIHGKR 180
LEFAEGRPLGKSGL WLKIHLA+LYAGG+EKL +D RLAFVENH+DDI+DSA N ++G R
Sbjct: 580 LEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNR 639
Query: 181 WWLKAEDPFQCLAACVILGQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 360
WWL AEDPFQCLAAC+ L +ALKS SP++V SHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 640 WWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAA 699
Query: 361 VNLVAGEKPADVYSEISLRVHEIMKKEAIR 450
VNLVAG+KPADVY+EI+LRV I++ ++I+
Sbjct: 700 VNLVAGDKPADVYTEIALRVDHIIRGDSIK 729
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
Length = 977
Score = 425 bits (1091), Expect = 6e-118
Identities = 202/251 (80%), Positives = 232/251 (92%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
S KDP +P A LAK+LI+QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG+I D+R
Sbjct: 727 SIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDR 786
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
+LF A+CY+AKVTLAALGE+F+AAR M+WLGDCAK+IA +N PVRWTTPLGLPVVQPY
Sbjct: 787 LLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYF 846
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+++RH+IRTSLQ+LALQREG+ V+VRKQRTAFPPNFVHSLDG+HMMMTAVACR+AGL FA
Sbjct: 847 KTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFA 906
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDS+WTHACDVD MNRILREKFVELYS PILEDLL++FQ+SYP L FPP+PKRGDF+L
Sbjct: 907 GVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNL 966
Query: 1161 KEVLKSHYFFN 1193
+EVL+S YFFN
Sbjct: 967 REVLESPYFFN 977
Score = 250 bits (637), Expect = 3e-065
Identities = 118/150 (78%), Positives = 135/150 (90%)
Frame = +1
Query: 1 LEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDDIIDSAENAIHGKR 180
LEFAEGRPLGKSGL WLKIHLA+LYAGGVEKL +D RLAFVENH+ DI+DSA N ++G R
Sbjct: 580 LEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNR 639
Query: 181 WWLKAEDPFQCLAACVILGQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 360
WWL AEDPFQCLAAC+ L +ALKS SP++VISHLPIHQDGSCNGLQHYAALGRDS EAAA
Sbjct: 640 WWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAA 699
Query: 361 VNLVAGEKPADVYSEISLRVHEIMKKEAIR 450
VNLVAGEKPADVY+EI+LRV I++ ++I+
Sbjct: 700 VNLVAGEKPADVYTEIALRVDHIIRGDSIK 729
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial
OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2
Length = 1002
Score = 407 bits (1045), Expect = 1e-112
Identities = 191/249 (76%), Positives = 226/249 (90%)
Frame = +3
Query: 447 KDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERML 626
KDP ++P A++LINQVDRKLVKQTVMTSVYGVTY+GAR+QIK+RL+E+GVI D+ L
Sbjct: 754 KDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNEL 813
Query: 627 FAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYCRS 806
FAAACY+AK TL ALGE+FEAAR+IMSWLGDCAKIIA +NHPVRWTTPLGLPVVQPY +
Sbjct: 814 FAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKL 873
Query: 807 ERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGV 986
RHLI+TSLQ+L LQRE + V V++QRTAFPPNFVHSLDG+HMMMTA+AC+E+GL+FAGV
Sbjct: 874 GRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
Query: 987 HDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKE 1166
HDSYWTHACDVD MN+ILREKFVELY PILE+LL+SFQ+S+P+L FPP+P+RGDFDL+E
Sbjct: 934 HDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLRE 993
Query: 1167 VLKSHYFFN 1193
VL+S YFFN
Sbjct: 994 VLESPYFFN 1002
Score = 235 bits (597), Expect = 1e-060
Identities = 109/150 (72%), Positives = 129/150 (86%)
Frame = +1
Query: 1 LEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDDIIDSAENAIHGKR 180
LEFAEGRPLG SGL WLKIHLAN+Y GGV+KLS++GR+AF ENHL+DI DSAE + GKR
Sbjct: 605 LEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKR 664
Query: 181 WWLKAEDPFQCLAACVILGQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 360
WWL AEDPFQCLA C+ + +AL+SPSP + IS++PIHQDGSCNGLQHYAALGRD AAA
Sbjct: 665 WWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAA 724
Query: 361 VNLVAGEKPADVYSEISLRVHEIMKKEAIR 450
VNLVAG+KPADVYS I+ RV +IMK++A +
Sbjct: 725 VNLVAGDKPADVYSGIAARVLDIMKRDAAK 754
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana
sylvestris GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 404 bits (1038), Expect = 9e-112
Identities = 191/249 (76%), Positives = 225/249 (90%)
Frame = +3
Query: 447 KDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERML 626
KDP ++P A++LINQVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+GVI D+ L
Sbjct: 754 KDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNEL 813
Query: 627 FAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYCRS 806
FAAACY+AK TL ALGE+FEAAR+IMSWLGDCAKIIA +NHPVRWTTPLGLPVVQPY +
Sbjct: 814 FAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKL 873
Query: 807 ERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGV 986
RHLI+TSLQ+L LQRE + V V++QRTAFPPNFVHSLDG+HMMMTA+AC+E+GL+FAGV
Sbjct: 874 GRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGV 933
Query: 987 HDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKE 1166
HDSYWTHA DVD MN+ILREKFVELY PILE+LL+SFQ+S+P+L FPP+P+RGDFDL+E
Sbjct: 934 HDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLRE 993
Query: 1167 VLKSHYFFN 1193
VL+S YFFN
Sbjct: 994 VLESPYFFN 1002
Score = 236 bits (601), Expect = 4e-061
Identities = 109/150 (72%), Positives = 131/150 (87%)
Frame = +1
Query: 1 LEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDDIIDSAENAIHGKR 180
LEFAEGRPLGKSGL WLKIHLAN+Y GGV+KLS++GR+AF ENH++DI DSAE + GKR
Sbjct: 605 LEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKR 664
Query: 181 WWLKAEDPFQCLAACVILGQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 360
WWL AEDPFQCLA C+ + +AL+SPSP + IS++PIHQDGSCNGLQHYAALGRD+ AAA
Sbjct: 665 WWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAA 724
Query: 361 VNLVAGEKPADVYSEISLRVHEIMKKEAIR 450
VNLVAG+KPADVYS I+ RV +IMK++A +
Sbjct: 725 VNLVAGDKPADVYSGIAARVLDIMKRDAAK 754
>sp|Q8L6J2|RPO2A_TOBAC DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana
tabacum GN=RPOT2-SYL PE=3 SV=1
Length = 332
Score = 402 bits (1032), Expect = 4e-111
Identities = 189/251 (75%), Positives = 222/251 (88%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ +DP P A A++L+NQVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G I+D+
Sbjct: 82 AQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDS 141
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LF AACY+AKVTL ALGE+FEAAR+IM+WLG+CAKIIAS+N PVRWTTPLGLPVVQPY
Sbjct: 142 ELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYR 201
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQ+L LQRE V V++QRTAFPPNF+HSLDG+HMMMTAVACR AGLNFA
Sbjct: 202 KIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFA 261
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVD +NRILREKFVELY PILE LL+SFQ SYP L+FPP+P+RGDFD+
Sbjct: 262 GVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDM 321
Query: 1161 KEVLKSHYFFN 1193
++VL+S YFFN
Sbjct: 322 RDVLESPYFFN 332
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
Length = 1020
Score = 402 bits (1032), Expect = 4e-111
Identities = 189/251 (75%), Positives = 222/251 (88%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ +DP P A A++L+NQVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G I+D+
Sbjct: 770 AQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDS 829
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LF AACY+AKVTL ALGE+FEAAR+IM+WLG+CAKIIAS+N PVRWTTPLGLPVVQPY
Sbjct: 830 ELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYR 889
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQ+L LQRE V V++QRTAFPPNF+HSLDG+HMMMTAVACR AGLNFA
Sbjct: 890 KIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFA 949
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVD +NRILREKFVELY PILE LL+SFQ SYP L+FPP+P+RGDFD+
Sbjct: 950 GVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDM 1009
Query: 1161 KEVLKSHYFFN 1193
++VL+S YFFN
Sbjct: 1010 RDVLESPYFFN 1020
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2
SV=2
Length = 1021
Score = 402 bits (1031), Expect = 6e-111
Identities = 190/251 (75%), Positives = 222/251 (88%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ +DP P A A+ L+NQVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G I+D+
Sbjct: 771 AQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDS 830
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LF AACY+AKVTL ALGE+FEAAR+IM+WLG+CAKIIAS+N PVRWTTPLGLPVVQPY
Sbjct: 831 ELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYR 890
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQ+L LQ+E V V++QRTAFPPNF+HSLDG+HMMMTAVACR AGLNFA
Sbjct: 891 KIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFA 950
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVD +NRILREKFVELY TPILE LL+SFQ SYP L+FPP+P+RGDFDL
Sbjct: 951 GVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDL 1010
Query: 1161 KEVLKSHYFFN 1193
++VL+S YFFN
Sbjct: 1011 RDVLESPYFFN 1021
Score = 233 bits (592), Expect = 5e-060
Identities = 109/150 (72%), Positives = 128/150 (85%)
Frame = +1
Query: 1 LEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDDIIDSAENAIHGKR 180
L FAEGRPLG+SGL WLKIHLANL+AGGVEKLS +GR+AF ENH+DDI DSA+ + G+R
Sbjct: 624 LVFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRR 683
Query: 181 WWLKAEDPFQCLAACVILGQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 360
WWL AEDPFQCLA C+ L +A++S SP + ISH+P+HQDGSCNGLQHYAALGRD AAA
Sbjct: 684 WWLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAA 743
Query: 361 VNLVAGEKPADVYSEISLRVHEIMKKEAIR 450
VNLVAGEKPADVYS I+ RV +IMK++A R
Sbjct: 744 VNLVAGEKPADVYSGIAARVLDIMKRDAQR 773
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial
OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1
Length = 976
Score = 371 bits (952), Expect = 8e-102
Identities = 174/254 (68%), Positives = 216/254 (85%)
Frame = +3
Query: 432 EEGSNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIS 611
++ + +DPE+ P A AK++++QVDRKLVKQTVMTSVYGVTY GAR+QIK+RL+E+G
Sbjct: 723 QQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKERGTFE 782
Query: 612 DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQ 791
D+ + F A+CY+AK+TL AL E+FEAARAI SW GDCAKIIAS+N+ V WTTPLGLPVVQ
Sbjct: 783 DDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENNAVCWTTPLGLPVVQ 842
Query: 792 PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL 971
PY + RHL++T+LQVL L RE + V R+Q TAF PNF+HSLDG+HMMMTAVAC AGL
Sbjct: 843 PYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGL 902
Query: 972 NFAGVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGD 1151
+FAGVHDS+WTHACDVD MN ILREKFVELY PILE+LL+SFQ+S+P++ FPP+P+RGD
Sbjct: 903 SFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLPERGD 962
Query: 1152 FDLKEVLKSHYFFN 1193
FDL++VL+S YFFN
Sbjct: 963 FDLRKVLESTYFFN 976
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=RPOT2 PE=2 SV=1
Length = 1011
Score = 368 bits (944), Expect = 7e-101
Identities = 177/251 (70%), Positives = 214/251 (85%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+++DPE P A A+ L+NQVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+ DE+
Sbjct: 761 ADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERSDFGDEK 820
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
+F AACY+AKVTLAA+ E+F+AARAIM W G+CAKIIAS+N VRWTTPLGLPVVQPY
Sbjct: 821 EVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKIIASENETVRWTTPLGLPVVQPYH 880
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ L++TSLQ L+LQ E + V VR+QRTAFPPNF+HSLDG+HMMMTAVAC+ AG+ FA
Sbjct: 881 QMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFA 940
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDS+WTHACDVD +N ILREKFVELYS PILE+LL+SF++S+P+L FPP+P+RGD DL
Sbjct: 941 GVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDL 1000
Query: 1161 KEVLKSHYFFN 1193
K VL S YFFN
Sbjct: 1001 KVVLDSPYFFN 1011
Score = 239 bits (609), Expect = 5e-062
Identities = 113/150 (75%), Positives = 130/150 (86%)
Frame = +1
Query: 1 LEFAEGRPLGKSGLYWLKIHLANLYAGGVEKLSHDGRLAFVENHLDDIIDSAENAIHGKR 180
LEFAEGRP+G SGL WLKIHLANLYAGGV+KLS DGRLAF ENHLDDI DSA+ + G R
Sbjct: 614 LEFAEGRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSR 673
Query: 181 WWLKAEDPFQCLAACVILGQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 360
WWL+AEDPFQCLA C+ L +AL+SPSP +V+SH+PIHQDGSCNGLQHYAALGRD+ A A
Sbjct: 674 WWLQAEDPFQCLAVCISLTEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEA 733
Query: 361 VNLVAGEKPADVYSEISLRVHEIMKKEAIR 450
VNLVAGEKPADVYS I+ RV +IM+++A R
Sbjct: 734 VNLVAGEKPADVYSGIATRVLDIMRRDADR 763
>sp|Q8L6J4|RPO1A_TOBAC DNA-directed RNA polymerase 1A (Fragment) OS=Nicotiana
tabacum GN=RPOT1-SYL PE=3 SV=2
Length = 155
Score = 258 bits (658), Expect = 1e-067
Identities = 119/155 (76%), Positives = 141/155 (90%)
Frame = +3
Query: 729 IIASDNHPVRWTTPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNF 908
IIA +NHPVRWTTPLGLPVVQPY + RHLI+TSLQ+L LQRE + V V++QRTAFPPNF
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 60
Query: 909 VHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYSTPILEDL 1088
VHSLDG+HMMMTA+AC+E+GL+FAGVHDSYWTHA DVD MN+ILREKFVELY PILE+L
Sbjct: 61 VHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENL 120
Query: 1089 LQSFQESYPNLVFPPVPKRGDFDLKEVLKSHYFFN 1193
L+SFQ+S+P+L FPP+P+RGDFDL+EVL+S YFFN
Sbjct: 121 LESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 155
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,378,909,851
Number of Sequences: 518415
Number of Extensions: 78378909851
Number of Successful Extensions: 523441567
Number of sequences better than 0.0: 0
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