BLASTX 7.6.2
Query= UN19080 /QuerySize=1648
(1647 letters)
Database: UniProt/TrEMBL;
11,397,958 sequences; 3,661,877,547 total letters
Score E
Sequences producing significant alignments: (bits) Value
tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 497 3e-138
tr|A5CAT5|A5CAT5_VITVI Putative uncharacterized protein OS=Vitis... 429 4e-118
tr|Q52GZ3|Q52GZ3_SPIOL DNA-directed RNA polymerase OS=Spinacia o... 423 5e-116
tr|B9IMA6|B9IMA6_POPTR DNA-directed RNA polymerase OS=Populus tr... 420 3e-115
tr|B9HB51|B9HB51_POPTR DNA-directed RNA polymerase OS=Populus tr... 413 4e-113
tr|C5X2G2|C5X2G2_SORBI DNA-directed RNA polymerase OS=Sorghum bi... 403 6e-110
tr|B9T5S6|B9T5S6_RICCO DNA-directed RNA polymerase OS=Ricinus co... 401 2e-109
tr|A2YYV2|A2YYV2_ORYSI DNA-directed RNA polymerase OS=Oryza sati... 398 1e-108
tr|B9G2A5|B9G2A5_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 398 1e-108
tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 398 1e-108
tr|B4FGZ4|B4FGZ4_MAIZE DNA-directed RNA polymerase OS=Zea mays P... 397 3e-108
tr|B9HIV5|B9HIV5_POPTR DNA-directed RNA polymerase OS=Populus tr... 397 3e-108
tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum a... 396 5e-108
tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 396 7e-108
tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS... 393 6e-107
tr|B9HWT3|B9HWT3_POPTR DNA-directed RNA polymerase OS=Populus tr... 392 8e-107
tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia o... 390 4e-106
tr|B9RLF2|B9RLF2_RICCO DNA-directed RNA polymerase OS=Ricinus co... 389 6e-106
tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodiu... 381 2e-103
tr|B9FQ93|B9FQ93_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 379 7e-103
>tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsis thaliana
GN=At2g24120 PE=2 SV=1
Length = 993
Score = 497 bits (1277), Expect = 3e-138
Identities = 245/254 (96%), Positives = 250/254 (98%)
Frame = +3
Query: 432 EEGSNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIS 611
++ S+KDPESNPTAALAKILI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVI+
Sbjct: 740 KKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIT 799
Query: 612 DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQ 791
DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRW TPLGLPVVQ
Sbjct: 800 DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWITPLGLPVVQ 859
Query: 792 PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL 971
PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL
Sbjct: 860 PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL 919
Query: 972 NFAGVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGD 1151
NFAGVHDSYWTHACDVDTMNRILREKFVELY+TPILEDLLQSFQESYPNLVFPPVPKRGD
Sbjct: 920 NFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGD 979
Query: 1152 FDLKEVLKSHYFFN 1193
FDLKEVLKS YFFN
Sbjct: 980 FDLKEVLKSQYFFN 993
>tr|A5CAT5|A5CAT5_VITVI Putative uncharacterized protein OS=Vitis vinifera
GN=VITISV_017990 PE=4 SV=1
Length = 305
Score = 429 bits (1103), Expect = 4e-118
Identities = 205/251 (81%), Positives = 233/251 (92%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
SNKDP ++P A LAK+LI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRL EKG+I+DER
Sbjct: 55 SNKDPATDPKALLAKVLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDER 114
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
+LF AACY+AKVTLAALGEIF+AAR IM+WLG+CAK+IAS+N PV+WTTPLGLPV+QPYC
Sbjct: 115 LLFTAACYAAKVTLAALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYC 174
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+SERHLIRTSLQVLALQREG+ V +RKQRTAFPPNFVHSLDG+HMMMTAVACR+AGL FA
Sbjct: 175 KSERHLIRTSLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFA 234
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDS+WTHACDVD MNRILREKFVELYS PILE+LL+SFQ S+P L FPP+P RG+FDL
Sbjct: 235 GVHDSFWTHACDVDKMNRILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDL 294
Query: 1161 KEVLKSHYFFN 1193
+EVL+S YFFN
Sbjct: 295 REVLESPYFFN 305
>tr|Q52GZ3|Q52GZ3_SPIOL DNA-directed RNA polymerase OS=Spinacia oleracea
GN=rpoT3 PE=2 SV=1
Length = 989
Score = 423 bits (1085), Expect = 5e-116
Identities = 197/254 (77%), Positives = 236/254 (92%)
Frame = +3
Query: 432 EEGSNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIS 611
E+ S KDP+++P A LAK+L++QVDRKLVKQTVMTSVYGVT+VGAREQIKRRLEEKGVI+
Sbjct: 736 EKDSRKDPKTDPHAVLAKVLVDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGVIT 795
Query: 612 DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQ 791
D+R+LF+AACYSAKVT++ALG++F+AAR IM WLGDCAK+IAS+N PVRWTTPLGLPVVQ
Sbjct: 796 DDRLLFSAACYSAKVTMSALGQLFQAARGIMDWLGDCAKVIASENQPVRWTTPLGLPVVQ 855
Query: 792 PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL 971
PYC+S+RHLI+TSLQVLALQ+EG ++V+KQRTAFPPN+VHSLDGTHMMMTAVACR+AGL
Sbjct: 856 PYCKSKRHLIKTSLQVLALQQEGEGIEVKKQRTAFPPNYVHSLDGTHMMMTAVACRDAGL 915
Query: 972 NFAGVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGD 1151
FAGVHDS+WTHACDV+ MN+ILR KFVELY+ PILE+LL+SFQ +YP FPP+P+RGD
Sbjct: 916 QFAGVHDSFWTHACDVEKMNQILRVKFVELYNMPILENLLESFQTAYPASTFPPLPERGD 975
Query: 1152 FDLKEVLKSHYFFN 1193
FDL+EVL+S YFFN
Sbjct: 976 FDLEEVLESPYFFN 989
>tr|B9IMA6|B9IMA6_POPTR DNA-directed RNA polymerase OS=Populus trichocarpa
GN=POPTRDRAFT_911981 PE=3 SV=1
Length = 882
Score = 420 bits (1078), Expect = 3e-115
Identities = 202/251 (80%), Positives = 233/251 (92%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
SNKDP +NP A LAKIL++QVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I+D+R
Sbjct: 632 SNKDPATNPHALLAKILVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDR 691
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
+LF+AACY+AKVTL ALGE+F+AAR IMSWLGDCAKIIAS++ PV+WTTPLGLPVVQPY
Sbjct: 692 LLFSAACYTAKVTLTALGELFQAARDIMSWLGDCAKIIASEDQPVQWTTPLGLPVVQPYY 751
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
++ERHLI+TSLQ+LALQREG++V VRKQRTAFPPNFVHSLDG+HMMMTAVACR+AGL FA
Sbjct: 752 KTERHLIKTSLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFA 811
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDS+WTHA DVD MNRILREKFVELY+ PILE+LL+ FQ SYP L FPP+P+RG+FDL
Sbjct: 812 GVHDSFWTHATDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLQFPPLPERGNFDL 871
Query: 1161 KEVLKSHYFFN 1193
++VL+S YFFN
Sbjct: 872 QKVLRSPYFFN 882
>tr|B9HB51|B9HB51_POPTR DNA-directed RNA polymerase OS=Populus trichocarpa
GN=POPTRDRAFT_802205 PE=3 SV=1
Length = 982
Score = 413 bits (1060), Expect = 4e-113
Identities = 199/251 (79%), Positives = 229/251 (91%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
SNKDP +NP A LAK+LI++VDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKG I+D+R
Sbjct: 732 SNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDR 791
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
+LF+AACY+AKVTL ALGE+F+AAR IM WLGDCAK+IAS++ PVRWTTPLGLPVVQPY
Sbjct: 792 VLFSAACYAAKVTLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYY 851
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+++RHLIRTSLQVLALQREG++V VRKQRTAFPPNFVHSLDG+HMMMTAVACR+A L FA
Sbjct: 852 KTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFA 911
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDS+WTHA D D MNRILREKFVELY+ PILE+LL+ FQ SYP L FP +P+RG+FDL
Sbjct: 912 GVHDSFWTHARDADLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDL 971
Query: 1161 KEVLKSHYFFN 1193
+EVL+S YFFN
Sbjct: 972 QEVLRSPYFFN 982
>tr|C5X2G2|C5X2G2_SORBI DNA-directed RNA polymerase OS=Sorghum bicolor
GN=Sb02g039520 PE=3 SV=1
Length = 976
Score = 403 bits (1033), Expect = 6e-110
Identities = 190/251 (75%), Positives = 224/251 (89%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ KDP +P A A+++++QVDRKLVKQTVMTSVYGVTYVGAR+QIKRRL+E+GVI DE
Sbjct: 726 AQKDPSIDPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGVIPDEA 785
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LF A+CY+AKVTL ALGE+F+AAR IM+WLGDCAK+IA +N PVRWTTPLGLPVVQPY
Sbjct: 786 ELFGASCYAAKVTLTALGEMFQAARGIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYR 845
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQVL LQRE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC+ GLNFA
Sbjct: 846 KLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFA 905
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVDTMN+ILREKFVELY TPILE+LL+SF++S+P L FPP+P+RGDFD+
Sbjct: 906 GVHDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDM 965
Query: 1161 KEVLKSHYFFN 1193
KEVL+S YFFN
Sbjct: 966 KEVLESPYFFN 976
>tr|B9T5S6|B9T5S6_RICCO DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_0196710 PE=3 SV=1
Length = 589
Score = 401 bits (1029), Expect = 2e-109
Identities = 192/251 (76%), Positives = 223/251 (88%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ KDP+ P A AKILI+QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+G I+D+
Sbjct: 339 AQKDPKVFPDALHAKILISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGFIADDT 398
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
+F A+CY+AKVTL ALGE+FEAAR+IMSWLG+CAKIIAS+N PVRWTTPLGLPVVQPY
Sbjct: 399 EIFVASCYAAKVTLTALGEMFEAARSIMSWLGECAKIIASENEPVRWTTPLGLPVVQPYR 458
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
RHLI+TSLQVL LQ+E V V++QRTAFPPNFVHSLDG+HMMMTAV C+ AGLNFA
Sbjct: 459 NFGRHLIKTSLQVLTLQQETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVTCKRAGLNFA 518
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVD MNRILREKFVELY TP+LE+LL+SFQ+S+P L FPP+P+RGDFDL
Sbjct: 519 GVHDSYWTHACDVDKMNRILREKFVELYETPVLENLLESFQQSFPTLSFPPLPERGDFDL 578
Query: 1161 KEVLKSHYFFN 1193
++VLKS YFFN
Sbjct: 579 QDVLKSPYFFN 589
>tr|A2YYV2|A2YYV2_ORYSI DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_30516 PE=3 SV=1
Length = 845
Score = 398 bits (1021), Expect = 1e-108
Identities = 189/249 (75%), Positives = 224/249 (89%)
Frame = +3
Query: 447 KDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERML 626
KDP ++P AA A++L++QVDRKLVKQTVMTSVYGVTYVGAREQIKRRL+E+ +I D+ L
Sbjct: 597 KDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSEL 656
Query: 627 FAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYCRS 806
F+A+CY+AKVTL ALGE+F+AAR+IM+WLGDCAK+IA +N PVRWTTPLGLPVVQPY +
Sbjct: 657 FSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 716
Query: 807 ERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGV 986
RHLI+TSLQVL LQRE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC+ GLNFAGV
Sbjct: 717 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 776
Query: 987 HDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKE 1166
HDSYWTHACDVDTMN+ILREKFVELY TPILE+LL+SF++S+P L FPP+P+RGDFDL +
Sbjct: 777 HDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTD 836
Query: 1167 VLKSHYFFN 1193
VL S YFFN
Sbjct: 837 VLGSPYFFN 845
>tr|B9G2A5|B9G2A5_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_28503 PE=3 SV=1
Length = 983
Score = 398 bits (1021), Expect = 1e-108
Identities = 189/249 (75%), Positives = 224/249 (89%)
Frame = +3
Query: 447 KDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERML 626
KDP ++P AA A++L++QVDRKLVKQTVMTSVYGVTYVGAREQIKRRL+E+ +I D+ L
Sbjct: 735 KDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSEL 794
Query: 627 FAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYCRS 806
F+A+CY+AKVTL ALGE+F+AAR+IM+WLGDCAK+IA +N PVRWTTPLGLPVVQPY +
Sbjct: 795 FSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 854
Query: 807 ERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGV 986
RHLI+TSLQVL LQRE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC+ GLNFAGV
Sbjct: 855 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 914
Query: 987 HDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKE 1166
HDSYWTHACDVDTMN+ILREKFVELY TPILE+LL+SF++S+P L FPP+P+RGDFDL +
Sbjct: 915 HDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTD 974
Query: 1167 VLKSHYFFN 1193
VL S YFFN
Sbjct: 975 VLGSPYFFN 983
>tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=rpoT1 PE=2 SV=1
Length = 1017
Score = 398 bits (1021), Expect = 1e-108
Identities = 189/249 (75%), Positives = 224/249 (89%)
Frame = +3
Query: 447 KDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDERML 626
KDP ++P AA A++L++QVDRKLVKQTVMTSVYGVTYVGAREQIKRRL+E+ +I D+ L
Sbjct: 769 KDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSEL 828
Query: 627 FAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYCRS 806
F+A+CY+AKVTL ALGE+F+AAR+IM+WLGDCAK+IA +N PVRWTTPLGLPVVQPY +
Sbjct: 829 FSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 888
Query: 807 ERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGV 986
RHLI+TSLQVL LQRE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC+ GLNFAGV
Sbjct: 889 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 948
Query: 987 HDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKE 1166
HDSYWTHACDVDTMN+ILREKFVELY TPILE+LL+SF++S+P L FPP+P+RGDFDL +
Sbjct: 949 HDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTD 1008
Query: 1167 VLKSHYFFN 1193
VL S YFFN
Sbjct: 1009 VLGSPYFFN 1017
>tr|B4FGZ4|B4FGZ4_MAIZE DNA-directed RNA polymerase OS=Zea mays PE=2 SV=1
Length = 323
Score = 397 bits (1018), Expect = 3e-108
Identities = 187/251 (74%), Positives = 224/251 (89%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ KDP P AA A+++++QVDRKLVKQTVMTSVYGVTY+GAREQI+RRL+E+GVI ++
Sbjct: 73 AQKDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDS 132
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LF A+CY+AKVTL ALGE+F+AAR+IM+WLGDCAK+IA +N PVRWTTPLGLPVVQPY
Sbjct: 133 ELFGASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYR 192
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQVL LQRE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC+ GLNFA
Sbjct: 193 KLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFA 252
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHA DVDTMN+ILREKFVELY TPILE+LL+SF++S+P L FPP+P+RGDFD+
Sbjct: 253 GVHDSYWTHASDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDM 312
Query: 1161 KEVLKSHYFFN 1193
KEVL+S YFFN
Sbjct: 313 KEVLESTYFFN 323
>tr|B9HIV5|B9HIV5_POPTR DNA-directed RNA polymerase OS=Populus trichocarpa
GN=POPTRDRAFT_765989 PE=3 SV=1
Length = 877
Score = 397 bits (1018), Expect = 3e-108
Identities = 188/254 (74%), Positives = 223/254 (87%)
Frame = +3
Query: 432 EEGSNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIS 611
+ + KDP NP + AK+L+NQVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+ +I+
Sbjct: 624 QRDAEKDPAINPNSVHAKLLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCIIA 683
Query: 612 DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQ 791
D+ L++AACY+AK TL AL E+FE AR IM+WLG+CAK+IAS+N PVRWTTPLGLPVVQ
Sbjct: 684 DDPQLYSAACYAAKTTLMALEEMFEGARGIMAWLGECAKVIASENQPVRWTTPLGLPVVQ 743
Query: 792 PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL 971
PY + RHLI+TSLQVL L+RE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC+EAGL
Sbjct: 744 PYRQLGRHLIKTSLQVLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGL 803
Query: 972 NFAGVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGD 1151
NFAGVHDSYWTHACDVD MNRILREKFVELY PILE+LL+SFQ S+PNL FPP+P+RG
Sbjct: 804 NFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQSSFPNLKFPPLPERGV 863
Query: 1152 FDLKEVLKSHYFFN 1193
FDLK+VL+S YFFN
Sbjct: 864 FDLKDVLRSTYFFN 877
>tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum aestivum PE=2
SV=1
Length = 1005
Score = 396 bits (1016), Expect = 5e-108
Identities = 188/251 (74%), Positives = 224/251 (89%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ KDP + AA A++L++QVDRKLVKQTVMTSVYGVTYVGAREQIKRRL+E+GVI+D+
Sbjct: 755 AQKDPAKDADAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDS 814
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LF A+CY+AKVTL ALGE+FEAAR+IM+WLGDCAK+IA +N PVRWTTPLGLPVVQPY
Sbjct: 815 ELFGASCYAAKVTLTALGEMFEAARSIMTWLGDCAKVIACENEPVRWTTPLGLPVVQPYR 874
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQVL LQRE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC++ GL FA
Sbjct: 875 KLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKQGLYFA 934
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVDTMN+ILREKFVELY PILE+LL+SF+ S+P L FPP+P+RG+FD+
Sbjct: 935 GVHDSYWTHACDVDTMNKILREKFVELYDAPILENLLESFETSFPKLKFPPLPERGNFDM 994
Query: 1161 KEVLKSHYFFN 1193
K+VL+S YFFN
Sbjct: 995 KDVLQSTYFFN 1005
>tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays GN=rpoT1 PE=2
SV=1
Length = 975
Score = 396 bits (1015), Expect = 7e-108
Identities = 186/251 (74%), Positives = 224/251 (89%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ KDP P AA A+++++QVDRKLVKQTVMTSVYGVTY+GAREQI+RRL+E+GVI ++
Sbjct: 725 AQKDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDS 784
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LF A+CY+AKVTL ALGE+F+AAR+IM+WLGDCAK+IA +N PVRWTTPLGLPVVQPY
Sbjct: 785 ELFGASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYR 844
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQVL LQRE + V V++Q+TAFPPNFVHSLDG+HMMMTAVAC+ GLNFA
Sbjct: 845 KLGRHLIKTSLQVLTLQRETDKVMVKRQKTAFPPNFVHSLDGSHMMMTAVACKRQGLNFA 904
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHA DVDTMN+ILREKFVELY TPILE+LL+SF++S+P L FPP+P+RGDFD+
Sbjct: 905 GVHDSYWTHASDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDM 964
Query: 1161 KEVLKSHYFFN 1193
KEVL+S YFFN
Sbjct: 965 KEVLESTYFFN 975
>tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS=Hordeum
vulgare GN=rpoTm PE=2 SV=1
Length = 862
Score = 393 bits (1007), Expect = 6e-107
Identities = 186/251 (74%), Positives = 223/251 (88%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ KDP + AA A++L++QVDR+LVKQTVMTSVYGVTYVGAREQIKRRL+E+GVI+D+
Sbjct: 612 AQKDPAKDADAARARLLVDQVDRRLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDS 671
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LF A+CY+AKVTL ALGE+FEAAR+IM+WLGDCAK+IA +N PVRW TPLGLPVVQPY
Sbjct: 672 ELFGASCYAAKVTLTALGEMFEAARSIMNWLGDCAKVIACENEPVRWKTPLGLPVVQPYR 731
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQVL LQRE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC++ GL FA
Sbjct: 732 KLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKQGLYFA 791
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVDTMN+ILREKFVELY PILE+LL+SF+ S+P L FPP+P+RG+FD+
Sbjct: 792 GVHDSYWTHACDVDTMNKILREKFVELYDAPILENLLESFETSFPKLKFPPLPERGNFDM 851
Query: 1161 KEVLKSHYFFN 1193
K+VL+S YFFN
Sbjct: 852 KDVLQSTYFFN 862
>tr|B9HWT3|B9HWT3_POPTR DNA-directed RNA polymerase OS=Populus trichocarpa
GN=POPTRDRAFT_769753 PE=3 SV=1
Length = 852
Score = 392 bits (1006), Expect = 8e-107
Identities = 187/251 (74%), Positives = 220/251 (87%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ DP NP + AK+LINQVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+ I+D+
Sbjct: 602 AENDPAINPNSVHAKLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCNIADDP 661
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
L++AACY+AK TL AL E+FE AR IM+WLG+CAK+IAS+N PV+WTTP GLPVVQPY
Sbjct: 662 QLYSAACYAAKTTLTALEEMFEGARGIMAWLGECAKVIASENQPVQWTTPFGLPVVQPYR 721
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ R LI+TSLQVL LQRE + V V++QRTAFPPNFVHSLDG+HMMMTAVAC+EAGLNFA
Sbjct: 722 QLGRQLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFA 781
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVD MNRILREKFVELY TPILE+LL+SFQ S+PNL FPP+P+RGDFDL
Sbjct: 782 GVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFQSSFPNLKFPPLPERGDFDL 841
Query: 1161 KEVLKSHYFFN 1193
++VL+S YFFN
Sbjct: 842 RDVLQSTYFFN 852
>tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia oleracea
GN=rpoT2 PE=2 SV=1
Length = 1036
Score = 390 bits (1000), Expect = 4e-106
Identities = 183/254 (72%), Positives = 217/254 (85%)
Frame = +3
Query: 432 EEGSNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIS 611
E + KDP P LA+ LINQVDRKLVKQTVMTSVYGVTY+GAREQIKRRL+E+ S
Sbjct: 783 EADAKKDPTDFPDTVLARKLINQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERAAFS 842
Query: 612 DERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQ 791
D+ ++ AACY A++TL ALGE+F+AAR+IMSWLGDCAKIIAS+N PVRW TPLGLPVVQ
Sbjct: 843 DDTEIYGAACYVARITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWITPLGLPVVQ 902
Query: 792 PYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGL 971
PYC+ RHLI+TSLQ+L L++E + VR+Q++AFPPNFVHSLDG+HMMMTAVAC+ AGL
Sbjct: 903 PYCKKGRHLIKTSLQMLTLEKETEKIMVRRQKSAFPPNFVHSLDGSHMMMTAVACKHAGL 962
Query: 972 NFAGVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGD 1151
NFAGVHDSYWTHACDVD M+ ILREKFVELY PILE+LL++FQ+SYP L FPP+P RGD
Sbjct: 963 NFAGVHDSYWTHACDVDQMSSILREKFVELYDQPILENLLETFQQSYPTLSFPPLPDRGD 1022
Query: 1152 FDLKEVLKSHYFFN 1193
F+L++VL S YFFN
Sbjct: 1023 FELRDVLDSPYFFN 1036
>tr|B9RLF2|B9RLF2_RICCO DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_1466350 PE=3 SV=1
Length = 997
Score = 389 bits (998), Expect = 6e-106
Identities = 182/251 (72%), Positives = 221/251 (88%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ KDP +NP A AK+LIN+VDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E+ ++D+
Sbjct: 747 AEKDPGTNPNALHAKLLINEVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERDAVADDP 806
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
L+AA+CY+AK TL AL E+FE AR+IM+WLG+CAK+IAS+N PV+WTTPLGLPVVQPY
Sbjct: 807 SLYAASCYAAKTTLMALEEMFEGARSIMAWLGECAKVIASENQPVQWTTPLGLPVVQPYR 866
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
+ RHLI+TSLQ+LALQ+E + + V++QRTAFPPNFVHSLDG+HMMMTAVAC+ AGLNFA
Sbjct: 867 QLGRHLIKTSLQMLALQKETDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACKHAGLNFA 926
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVD MNRILRE FVELY PILE+LL+ FQ+S+P L FPP+P RGDFDL
Sbjct: 927 GVHDSYWTHACDVDEMNRILRENFVELYEAPILENLLEGFQKSFPKLKFPPLPDRGDFDL 986
Query: 1161 KEVLKSHYFFN 1193
++VL+S YFFN
Sbjct: 987 RDVLESPYFFN 997
>tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodium album PE=2
SV=1
Length = 988
Score = 381 bits (977), Expect = 2e-103
Identities = 180/251 (71%), Positives = 215/251 (85%)
Frame = +3
Query: 441 SNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISDER 620
+ KDP P A AK+L+NQVDRKLVKQTVMTSVYGVTY+G R+QIKRRL+E+ I D+
Sbjct: 738 AEKDPSIEPNAFHAKLLLNQVDRKLVKQTVMTSVYGVTYIGVRDQIKRRLKERDAIVDDN 797
Query: 621 MLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQPYC 800
LFAA+CY+AK T+ AL E+FEAAR+IM WLGDCAKIIAS+N P RW+TPLGLPVVQPY
Sbjct: 798 DLFAASCYAAKTTMTALEEMFEAARSIMGWLGDCAKIIASENQPARWSTPLGLPVVQPYR 857
Query: 801 RSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFA 980
R L++TSLQVL L+ + + V ++QRTAFPPNFVHSLDG+HMMMTA+AC++AG+NFA
Sbjct: 858 NHGRRLVKTSLQVLTLRCDTDKVMAKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGMNFA 917
Query: 981 GVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDFDL 1160
GVHDSYWTHACDVD MN+ILREKFVELY PILE+LL+SFQES+P L FPP+P+RGDFDL
Sbjct: 918 GVHDSYWTHACDVDKMNQILREKFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDL 977
Query: 1161 KEVLKSHYFFN 1193
+EVL+S YFFN
Sbjct: 978 REVLESPYFFN 988
>tr|B9FQ93|B9FQ93_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=OsJ_22187 PE=3 SV=1
Length = 946
Score = 379 bits (972), Expect = 7e-103
Identities = 170/253 (67%), Positives = 225/253 (88%)
Frame = +3
Query: 435 EGSNKDPESNPTAALAKILINQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVISD 614
E S +DP +NPTA+LA++L++QVDRKLVKQTVMTSVYGVTY+GAR+QI +RL+EKG+I+D
Sbjct: 694 EDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQEKGLITD 753
Query: 615 ERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNHPVRWTTPLGLPVVQP 794
+++L+ +CY+ +VTL ALG++F++AR IM+WLGDCAK+IAS+NHPV+WT+P+GLPVVQP
Sbjct: 754 DKLLYEVSCYATRVTLDALGQMFQSARGIMAWLGDCAKMIASENHPVKWTSPVGLPVVQP 813
Query: 795 YCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLN 974
Y + + ++IRTSLQ LAL+REG+ + +++Q+ AFPPNFVHSLD +HMMMTA+AC++AGL+
Sbjct: 814 YKKYKNYMIRTSLQCLALRREGDAIALQRQKAAFPPNFVHSLDSSHMMMTAIACKKAGLH 873
Query: 975 FAGVHDSYWTHACDVDTMNRILREKFVELYSTPILEDLLQSFQESYPNLVFPPVPKRGDF 1154
FAGVHDS+W HACDVD MN+ILRE+FVELYS PILE+LL+ FQ S+P L FPP P +GDF
Sbjct: 874 FAGVHDSFWVHACDVDKMNQILREQFVELYSMPILENLLKEFQTSFPTLEFPPCPSQGDF 933
Query: 1155 DLKEVLKSHYFFN 1193
D++EVL S YFFN
Sbjct: 934 DVREVLASTYFFN 946
Database: UniProt/TrEMBL
Posted date: Sat Aug 07 14:51:12 2010
Number of letters in database: 3,661,877,547
Number of sequences in database: 11,397,958
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,549,685,735,968
Number of Sequences: 11397958
Number of Extensions: 1549685735968
Number of Successful Extensions: 572066229
Number of sequences better than 0.0: 0
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