BLASTX 7.6.2
Query= UN19443 /QuerySize=1446
(1445 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 OS=Homo sapiens... 74 2e-012
sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 OS=Mus musculus... 71 2e-011
sp|P51513|NOVA1_HUMAN RNA-binding protein Nova-1 OS=Homo sapiens... 70 3e-011
sp|Q2PFW9|NOVA1_MACFA RNA-binding protein Nova-1 OS=Macaca fasci... 70 3e-011
sp|Q80WA4|NOVA1_RAT RNA-binding protein Nova-1 (Fragment) OS=Rat... 70 3e-011
sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Homo sapiens... 55 1e-006
sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus musculus... 55 1e-006
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1
SV=1
Length = 492
Score = 74 bits (180), Expect = 2e-012
Identities = 34/75 (45%), Positives = 53/75 (70%)
Frame = -1
Query: 641 EEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGS 462
E A V I V + +G +LG+GG+ ++E ++TGARI+IS +G+F+ GT +R+V+ITGS
Sbjct: 403 ESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS 462
Query: 461 QRAIQQAETMIKQKV 417
A Q A+ +I Q+V
Sbjct: 463 PAATQAAQYLISQRV 477
Score = 66 bits (160), Expect = 5e-010
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 2/105 (1%)
Frame = -1
Query: 980 RRLRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTIEEQ 801
++ +L+VPNS+ G IIGKGGAT+K+ +E+S A +++S L +R+VT+SG E+
Sbjct: 131 KQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEG-INLQERVVTVSGEPEQV 189
Query: 800 MRAIDLILAKLTEDDHYSQNVHSPYSYAAGYNAVNYAPNYAPNGS 666
+A+ I+ K+ ED S ++ Y+ AG N P +P S
Sbjct: 190 HKAVSAIVQKVQEDPQSSSCLNISYANVAG-PVANSNPTGSPYAS 233
>sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1
SV=2
Length = 507
Score = 71 bits (172), Expect = 2e-011
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 12/194 (6%)
Frame = -1
Query: 974 LRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTIEEQMR 795
L++++P+ + G IIGKGG TI +E+ A IK+S + Y G ++R+ + GTIE
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA 111
Query: 794 AIDLILAKLTEDDHYSQNV--HSPYSYAAGYNAVN------YAPNYAPNGSGGRYQNHKE 639
I K+ E QNV P S VN P+
Sbjct: 112 VHGFIAEKIRE---MPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTT 168
Query: 638 EASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGSQ 459
+ V I V + GL++G+GG + I + +GA +++S + D ++ +R V+++G
Sbjct: 169 SRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN-LQERVVTVSGEP 227
Query: 458 RAIQQAETMIKQKV 417
++A +I QK+
Sbjct: 228 EQNRKAVELIIQKI 241
Score = 70 bits (170), Expect = 3e-011
Identities = 31/69 (44%), Positives = 51/69 (73%)
Frame = -1
Query: 623 VTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGSQRAIQQ 444
V I V + +G +LG+GG+ ++E ++TGARI+IS +G+F+ GT +RKV+ITG+ A Q
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 483
Query: 443 AETMIKQKV 417
A+ +I Q++
Sbjct: 484 AQYLITQRI 492
Score = 67 bits (163), Expect = 2e-010
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Frame = -1
Query: 977 RLRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTIEEQM 798
+++++VPNS+ G IIGKGGAT+K+ +E+S A +++S + L +R+VT+SG E+
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG-INLQERVVTVSGEPEQNR 231
Query: 797 RAIDLILAKLTEDDHYSQNVHSPYSYAAGYNAVNYAPNYAPNGS 666
+A++LI+ K+ ED ++ Y+ N N P GS
Sbjct: 232 KAVELIIQKIQEDPQSGSCLNISYA-----NVTGPVANSNPTGS 270
>sp|P51513|NOVA1_HUMAN RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1
SV=1
Length = 510
Score = 70 bits (170), Expect = 3e-011
Identities = 31/69 (44%), Positives = 51/69 (73%)
Frame = -1
Query: 623 VTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGSQRAIQQ 444
V I V + +G +LG+GG+ ++E ++TGARI+IS +G+F+ GT +RKV+ITG+ A Q
Sbjct: 427 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 486
Query: 443 AETMIKQKV 417
A+ +I Q++
Sbjct: 487 AQYLITQRI 495
Score = 67 bits (162), Expect = 3e-010
Identities = 37/104 (35%), Positives = 63/104 (60%), Gaps = 6/104 (5%)
Frame = -1
Query: 977 RLRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTIEEQM 798
+++++VPNS+ G IIGKGGAT+K+ +E+S A +++S + L +R+VT+SG E+
Sbjct: 176 QVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDG-INLQERVVTVSGEPEQNR 234
Query: 797 RAIDLILAKLTEDDHYSQNVHSPYSYAAGYNAVNYAPNYAPNGS 666
+A++LI+ K+ ED ++ Y+ N N P GS
Sbjct: 235 KAVELIIQKIQEDPQSGSCLNISYA-----NVTGPVANSNPTGS 273
>sp|Q2PFW9|NOVA1_MACFA RNA-binding protein Nova-1 OS=Macaca fascicularis
GN=NOVA1 PE=2 SV=1
Length = 483
Score = 70 bits (170), Expect = 3e-011
Identities = 31/69 (44%), Positives = 51/69 (73%)
Frame = -1
Query: 623 VTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGSQRAIQQ 444
V I V + +G +LG+GG+ ++E ++TGARI+IS +G+F+ GT +RKV+ITG+ A Q
Sbjct: 400 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 459
Query: 443 AETMIKQKV 417
A+ +I Q++
Sbjct: 460 AQYLITQRI 468
Score = 69 bits (166), Expect = 1e-010
Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Frame = -1
Query: 1103 TNDRIIMISGSIKEVVSGLELILDKLHSELHAEEGSDVEPRR--RLRLVVPNSSCGGIIG 930
T + + + G I E + + + K + + V P R +++++VPNS+ G IIG
Sbjct: 105 TVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIG 164
Query: 929 KGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTIEEQMRAIDLILAKLTEDDHY 750
KGGAT+K+ +E+S A +++S + L +R+VT+SG E+ +A++LI+ K+ ED
Sbjct: 165 KGGATVKAIMEQSGAWVQLSQKPDG-INLQERVVTVSGEPEQNRKAVELIIQKIQEDPQS 223
Query: 749 SQNVHSPYSYAAGYNAVNYAPNYAPNGS 666
++ Y+ N N P GS
Sbjct: 224 GSCLNISYA-----NVTGPVANSNPTGS 246
>sp|Q80WA4|NOVA1_RAT RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus
GN=Nova1 PE=2 SV=1
Length = 474
Score = 70 bits (170), Expect = 3e-011
Identities = 31/69 (44%), Positives = 51/69 (73%)
Frame = -1
Query: 623 VTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGSQRAIQQ 444
V I V + +G +LG+GG+ ++E ++TGARI+IS +G+F+ GT +RKV+ITG+ A Q
Sbjct: 399 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 458
Query: 443 AETMIKQKV 417
A+ +I Q++
Sbjct: 459 AQYLITQRI 467
Score = 68 bits (165), Expect = 1e-010
Identities = 41/133 (30%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Frame = -1
Query: 1103 TNDRIIMISGSIKEVVSGLELILDKLHSELHAEEGSDVEPRR--RLRLVVPNSSCGGIIG 930
T + + + G I E + + + K + + V P R +++++VPNS+ G IIG
Sbjct: 104 TIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIG 163
Query: 929 KGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTIEEQMRAIDLILAKLTEDDHY 750
KGGAT+K+ +E+S A +++S + L +R+VT+SG E+ +A++LI+ K+ ED
Sbjct: 164 KGGATVKAIMEQSGAWVQLSQKPDG-INLQERVVTVSGEPEQNRKAVELIIQKIQEDPQS 222
Query: 749 SQNVHSPYSYAAG 711
++ Y+ G
Sbjct: 223 GSCLNISYANVTG 235
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=1
SV=2
Length = 371
Score = 55 bits (130), Expect = 1e-006
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Frame = -1
Query: 1109 GSTNDRIIMISGSIKEVVSGLELILDKLHSEL---HAEEGSDVEPRRRLRLVVPNSSCGG 939
G+ +RI+ I+G + +I K ++ + + +P LRLVVP S CG
Sbjct: 84 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGS 143
Query: 938 IIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTIEEQMRAIDLILAKLTE 762
+IGKGG+ IK E + A ++++ + ++R VT+SGT + ++ + I + E
Sbjct: 144 LIGKGGSKIKEIRESTGAQVQVA--GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLE 200
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2
SV=3
Length = 371
Score = 55 bits (130), Expect = 1e-006
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Frame = -1
Query: 1109 GSTNDRIIMISGSIKEVVSGLELILDKLHSEL---HAEEGSDVEPRRRLRLVVPNSSCGG 939
G+ +RI+ I+G + +I K ++ + + +P LRLVVP S CG
Sbjct: 84 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGS 143
Query: 938 IIGKGGATIKSFIEESKAGIKISPLDNTYYGLSDRLVTLSGTIEEQMRAIDLILAKLTE 762
+IGKGG+ IK E + A ++++ + ++R VT+SGT + ++ + I + E
Sbjct: 144 LIGKGGSKIKEIRESTGAQVQVA--GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLE 200
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,872,592,117
Number of Sequences: 518415
Number of Extensions: 81872592117
Number of Successful Extensions: 541474699
Number of sequences better than 0.0: 0
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