BLASTX 7.6.2
Query= UN19710 /QuerySize=1186
(1185 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryo... 549 2e-156
TAIR9_protein||AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | EIF3G2;... 401 4e-112
TAIR9_protein||AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryo... 337 1e-092
TAIR9_protein||AT1G54080.1 | Symbols: UBP1A | oligouridylate-bin... 65 1e-010
TAIR9_protein||AT3G14100.1 | Symbols: | oligouridylate-binding ... 64 1e-010
TAIR9_protein||AT1G54080.2 | Symbols: UBP1A | oligouridylate-bin... 62 6e-010
TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR3... 57 2e-008
TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR3... 57 2e-008
TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding /... 57 2e-008
TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding /... 57 2e-008
TAIR9_protein||AT1G17370.1 | Symbols: UBP1B | UBP1B (oligouridyl... 56 4e-008
TAIR9_protein||AT1G17370.2 | Symbols: UBP1B | UBP1B (oligouridyl... 56 4e-008
TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA bindi... 56 5e-008
TAIR9_protein||AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA... 55 6e-008
TAIR9_protein||AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA... 55 6e-008
TAIR9_protein||AT5G19030.1 | Symbols: | RNA recognition motif (... 54 1e-007
TAIR9_protein||AT1G13690.1 | Symbols: ATE1 | ATE1; nucleic acid ... 54 2e-007
TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 54 2e-007
TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotei... 54 2e-007
>TAIR9_protein||AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G / eIF3g | chr3:3578536-3580366 FORWARD
Length = 295
Score = 549 bits (1413), Expect = 2e-156
Identities = 272/294 (92%), Positives = 280/294 (95%), Gaps = 2/294 (0%)
Frame = -1
Query: 1080 TTDSQQKTSKFRWGEMDEDDDLDFLLPPKQVIGPDENGLKTVIEYKFNDEGNKVKITTRS 901
T DSQQKTSKFRWGEMDED+DLDFLLPPKQVIGPDENGLKT IEYKFNDE NKVKITTR+
Sbjct: 2 TIDSQQKTSKFRWGEMDEDEDLDFLLPPKQVIGPDENGLKTTIEYKFNDEENKVKITTRT 61
Query: 900 RVRKLASARLNKRAMERRSWPKFGDAANEDAGSHLTMVSTEEILLERPRAPGTKADESKA 721
RVRKLASARLNKRAMERR+WPKFGDAANE+AGSHLTMVSTEEILLERPRAPGTKADESKA
Sbjct: 62 RVRKLASARLNKRAMERRNWPKFGDAANEEAGSHLTMVSTEEILLERPRAPGTKADESKA 121
Query: 720 AGDGLSQLSK-GAVLMVCRTCGKKGDHWTSKCPYKDLAAPTDVFVDKPPTGETSAVPAAP 544
GDGLSQL K GAVLMVCR C KKGDHWTSKCPYKDLAAPTDVF+DKPPTGE+S + AAP
Sbjct: 122 TGDGLSQLGKGGAVLMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAP 181
Query: 543 G-GKAAYVPPSMRAGADRSTGGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVSR 367
G GKAAYVPPSMRAGADRS GSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAV+R
Sbjct: 182 GTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTR 241
Query: 366 VYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT* 205
VYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT*
Sbjct: 242 VYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT* 295
>TAIR9_protein||AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | EIF3G2; RNA binding /
translation initiation factor | chr5:1808169-1809742 FORWARD
Length = 309
Score = 401 bits (1030), Expect = 4e-112
Identities = 203/289 (70%), Positives = 238/289 (82%), Gaps = 9/289 (3%)
Frame = -1
Query: 1074 DSQQKTSKFRWGEMDEDD-DLDFLLPPKQVIGPDENGLKTVIEYKFNDEGNKVKITTRSR 898
D+ QKT K RWGE+DE++ D DFLLPPKQ+I PD+NG+K VIEYKFN+E KVKITT +R
Sbjct: 4 DTIQKTKKLRWGEIDEEEGDYDFLLPPKQMISPDQNGVKKVIEYKFNEEDKKVKITTTTR 63
Query: 897 VRKLASARLNKRAMERRSWPKFGDAANEDAGSHLTMVSTEEILLERPRAPGTKADESKAA 718
V+K A L K+A+ERRSW KFGDAA+E++ S+LTM STE+I+LER RAPG+ A++S +
Sbjct: 64 VQKRA---LTKQAVERRSWNKFGDAAHEESSSYLTMRSTEDIILERIRAPGSNAEQSTVS 120
Query: 717 GDGLSQLSK-GAVLMVCRTCGKKGDHWTSKCPYKDLAAPTDVFVDKPPTGETSAVPAAPG 541
GD +SQL K GAVLMVCR C KKGDHWTS+CP KDL + +D+P T ETS
Sbjct: 121 GDSMSQLGKPGAVLMVCRLCQKKGDHWTSRCPQKDLLS----LMDEPLTAETSTSTITGT 176
Query: 540 GKAAYVPPSMRAGADRSTGGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVSRVY 361
G+AAYVPPSMR GADR GGSDMR R+DENSVRVTNLSEDTR PDLMELF PFGAV+R +
Sbjct: 177 GRAAYVPPSMREGADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCH 236
Query: 360 VAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR 214
VAIDQKT +SRGFGFV+FVSREDAQRAINKLNGYGYDNLILRVEW+TP+
Sbjct: 237 VAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWSTPK 285
>TAIR9_protein||AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G / eIF3g | chr3:3578536-3580366 FORWARD
Length = 322
Score = 337 bits (862), Expect = 1e-092
Identities = 167/182 (91%), Positives = 171/182 (93%), Gaps = 2/182 (1%)
Frame = -1
Query: 744 TKADESKAAGDGLSQLSK-GAVLMVCRTCGKKGDHWTSKCPYKDLAAPTDVFVDKPPTGE 568
TKADESKA GDGLSQL K GAVLMVCR C KKGDHWTSKCPYKDLAAPTDVF+DKPPTGE
Sbjct: 141 TKADESKATGDGLSQLGKGGAVLMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGE 200
Query: 567 TSAVPAAPG-GKAAYVPPSMRAGADRSTGGSDMRRRNDENSVRVTNLSEDTREPDLMELF 391
+S + AAPG GKAAYVPPSMRAGADRS GSDMRRRNDENSVRVTNLSEDTREPDLMELF
Sbjct: 201 SSTMSAAPGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELF 260
Query: 390 HPFGAVSRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRP 211
HPFGAV+RVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRP
Sbjct: 261 HPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRP 320
Query: 210 T* 205
T*
Sbjct: 321 T* 322
Score = 218 bits (554), Expect = 7e-057
Identities = 112/142 (78%), Positives = 119/142 (83%), Gaps = 1/142 (0%)
Frame = -1
Query: 1080 TTDSQQKTSKFRWGEMDEDDDLDFLLPPKQVIGPDENGLKTVIEYKFNDEGNKVKITTRS 901
T DSQQKTSKFRWGEMDED+DLDFLLPPKQVIGPDENGLKT IEYKFNDE NKVKITTR+
Sbjct: 2 TIDSQQKTSKFRWGEMDEDEDLDFLLPPKQVIGPDENGLKTTIEYKFNDEENKVKITTRT 61
Query: 900 RVRKLASARLNKRAMERRSWPKFGDAANEDAGSHLTMVSTEEILLERPRAPGTKADESKA 721
RVRKLASARLNKRAMERR+WPKFGDAANE+AGSHLTMVSTEEILLERPRAPG +
Sbjct: 62 RVRKLASARLNKRAMERRNWPKFGDAANEEAGSHLTMVSTEEILLERPRAPGDQLANHML 121
Query: 720 AGDGLSQLSKGAVLMVCRTCGK 655
A +L K A+ V C K
Sbjct: 122 ASIPEYEL-KCALTFVAANCTK 142
>TAIR9_protein||AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 427
Score = 65 bits (156), Expect = 1e-010
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = -1
Query: 468 RRNDENS---VRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSR 298
+R D +S + V +LS + + L + F F + S V DQKTG SRGFGFV+F ++
Sbjct: 140 QREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQ 199
Query: 297 EDAQRAINKLNGYGYDNLILRVEWATPRPT 208
+DAQ AIN++NG + +R WAT T
Sbjct: 200 QDAQTAINEMNGKWVSSRQIRCNWATKGAT 229
>TAIR9_protein||AT3G14100.1 | Symbols: | oligouridylate-binding protein,
putative | chr3:4673027-4675950 FORWARD
Length = 428
Score = 64 bits (155), Expect = 1e-010
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = -1
Query: 468 RRNDENS---VRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSR 298
+R D +S + V +LS + + L + F F + S V DQKTG SRGFGFV+F ++
Sbjct: 136 QREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQ 195
Query: 297 EDAQRAINKLNGYGYDNLILRVEWATPRPT 208
+DAQ AIN++NG + +R WAT T
Sbjct: 196 QDAQTAINEMNGKWLSSRQIRCNWATKGAT 225
>TAIR9_protein||AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein,
putative | chr1:20183923-20186824 REVERSE
Length = 431
Score = 62 bits (149), Expect = 6e-010
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = -1
Query: 450 SVRVTNLSEDTREPDLMELFHPFGAVSRVY----VAIDQKTGVSRGFGFVNFVSREDAQR 283
++ V +LS + + L + F F + S Y V DQKTG SRGFGFV+F +++DAQ
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 282 AINKLNGYGYDNLILRVEWATPRPT 208
AIN++NG + +R WAT T
Sbjct: 209 AINEMNGKWVSSRQIRCNWATKGAT 233
>TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632695 FORWARD
Length = 288
Score = 57 bits (136), Expect = 2e-008
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Frame = -1
Query: 471 RRRNDENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSRED 292
R R+ S+ V NL D R+ DL + F FG V +Y+ D TG RGFGFV F+ D
Sbjct: 30 RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPAD 89
Query: 291 AQRAINKLNGY---GYDNLILRVEWATPRPT 208
A A + ++GY G + ++ E +PT
Sbjct: 90 AADAKHHMDGYLLLGRELTVVFAEENRKKPT 120
>TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632567 FORWARD
Length = 221
Score = 57 bits (136), Expect = 2e-008
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Frame = -1
Query: 471 RRRNDENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSRED 292
R R+ S+ V NL D R+ DL + F FG V +Y+ D TG RGFGFV F+ D
Sbjct: 30 RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPAD 89
Query: 291 AQRAINKLNGY---GYDNLILRVEWATPRPT 208
A A + ++GY G + ++ E +PT
Sbjct: 90 AADAKHHMDGYLLLGRELTVVFAEENRKKPT 120
>TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 57 bits (136), Expect = 2e-008
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Frame = -1
Query: 504 GADRSTGGSDMRRRNDE---NSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGV 334
G+ RS+ GS + N + V NLS + L LF+ G V V D+ +G
Sbjct: 237 GSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGR 296
Query: 333 SRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRP 211
S+GFGFV S ++ Q+AIN LNG D +RV A RP
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
>TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 57 bits (136), Expect = 2e-008
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Frame = -1
Query: 504 GADRSTGGSDMRRRNDE---NSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGV 334
G+ RS+ GS + N + V NLS + L LF+ G V V D+ +G
Sbjct: 237 GSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGR 296
Query: 333 SRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRP 211
S+GFGFV S ++ Q+AIN LNG D +RV A RP
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
>TAIR9_protein||AT1G17370.1 | Symbols: UBP1B | UBP1B (oligouridylate binding
protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825 REVERSE
Length = 420
Score = 56 bits (134), Expect = 4e-008
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = -1
Query: 468 RRNDENS---VRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSR 298
+R D +S + V +LS + + L F + S V DQKTG SRGFGFV+F ++
Sbjct: 131 QREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQ 190
Query: 297 EDAQRAINKLNGYGYDNLILRVEWATPRPT 208
+DAQ AI+++ G + +R WAT T
Sbjct: 191 QDAQTAIDEITGKWLGSRQIRCNWATKGAT 220
>TAIR9_protein||AT1G17370.2 | Symbols: UBP1B | UBP1B (oligouridylate binding
protein 1B); mRNA 3'-UTR binding | chr1:5951842-5954825 REVERSE
Length = 417
Score = 56 bits (134), Expect = 4e-008
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = -1
Query: 468 RRNDENS---VRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSR 298
+R D +S + V +LS + + L F + S V DQKTG SRGFGFV+F ++
Sbjct: 131 QREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQ 190
Query: 297 EDAQRAINKLNGYGYDNLILRVEWATPRPT 208
+DAQ AI+++ G + +R WAT T
Sbjct: 191 QDAQTAIDEITGKWLGSRQIRCNWATKGAT 220
>TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA binding / nucleic
acid binding / nucleotide binding | chr3:4429564-4431602 REVERSE
Length = 263
Score = 56 bits (133), Expect = 5e-008
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Frame = -1
Query: 486 GGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNF 307
GGS R + S+ V NL D R+ DL F FG V +Y+ D TG RGFGF+ F
Sbjct: 28 GGS--RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
Query: 306 VSREDAQRAINKLNGY---GYDNLILRVEWATPRPT 208
+ DA A ++++GY G + ++ E +PT
Sbjct: 86 MDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPT 121
>TAIR9_protein||AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA binding /
nucleic acid binding / nucleotide binding | chr5:25681849-25683553
REVERSE
Length = 304
Score = 55 bits (132), Expect = 6e-008
Identities = 29/84 (34%), Positives = 49/84 (58%)
Frame = -1
Query: 462 NDENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSREDAQR 283
+D S+ V N++ T DL LF +G V V++ D++TG SRGF FV + +++A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72
Query: 282 AINKLNGYGYDNLILRVEWATPRP 211
A+ +L+G D + V++A P
Sbjct: 73 AVERLDGRVVDGREITVQFAKYGP 96
>TAIR9_protein||AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA binding /
nucleic acid binding / nucleotide binding | chr5:25681849-25683553
REVERSE
Length = 304
Score = 55 bits (132), Expect = 6e-008
Identities = 29/84 (34%), Positives = 49/84 (58%)
Frame = -1
Query: 462 NDENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSREDAQR 283
+D S+ V N++ T DL LF +G V V++ D++TG SRGF FV + +++A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72
Query: 282 AINKLNGYGYDNLILRVEWATPRP 211
A+ +L+G D + V++A P
Sbjct: 73 AVERLDGRVVDGREITVQFAKYGP 96
>TAIR9_protein||AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357503-6359081 REVERSE
Length = 173
Score = 54 bits (129), Expect = 1e-007
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Frame = -1
Query: 507 AGADRSTGGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSR 328
AG D + S + + +S+ V S+ E L ++F FG V+ V + +++T S
Sbjct: 61 AGDDETREASSL--PSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSL 118
Query: 327 GFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATP 217
G+G+V F S+EDAQ A+ +NG +D + V++ P
Sbjct: 119 GYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQP 155
>TAIR9_protein||AT1G13690.1 | Symbols: ATE1 | ATE1; nucleic acid binding /
nucleotide binding | chr1:4693380-4694179 FORWARD
Length = 178
Score = 54 bits (128), Expect = 2e-007
Identities = 28/80 (35%), Positives = 43/80 (53%)
Frame = -1
Query: 456 ENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQKTGVSRGFGFVNFVSREDAQRAI 277
+N++ V L+++ E L F PFG + V +DQ R FGFV F+ REDA A+
Sbjct: 12 KNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
Query: 276 NKLNGYGYDNLILRVEWATP 217
+ ++G +L V +A P
Sbjct: 72 DNMDGAELYGRVLTVNYALP 91
>TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 54 bits (128), Expect = 2e-007
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Frame = -1
Query: 513 MRAGADRSTGGSDMRR----RNDENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQ 346
+R G +S+ G R + + V LS T + L + F FG V+ V D+
Sbjct: 11 LRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADR 70
Query: 345 KTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR 214
+TG SRGFGFV+F + A AI +++G + +RV AT R
Sbjct: 71 ETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr2:15634980-15636331
REVERSE
Length = 290
Score = 54 bits (127), Expect = 2e-007
Identities = 36/104 (34%), Positives = 46/104 (44%)
Frame = -1
Query: 522 PPSMRAGADRSTGGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVSRVYVAIDQK 343
P S + GG N V V NLS + L LF G V V D+
Sbjct: 181 PRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRD 240
Query: 342 TGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRP 211
+G S+GFGFV + S ++ Q AI L+G D +RV A RP
Sbjct: 241 SGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,194,490,410
Number of Sequences: 33410
Number of Extensions: 10194490410
Number of Successful Extensions: 338512619
Number of sequences better than 0.0: 0
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