BLASTX 7.6.2
Query= UN19884 /QuerySize=781
(780 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xeno... 72 3e-012
sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xe... 69 4e-011
sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xe... 68 7e-011
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo... 68 7e-011
sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pong... 68 7e-011
sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cric... 67 9e-011
sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus ... 67 9e-011
sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus... 67 9e-011
sp|Q9PTX2|CIRBP_RANCA Cold-inducible RNA-binding protein OS=Rana... 64 8e-010
sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein... 63 2e-009
sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein... 62 4e-009
sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Hom... 62 4e-009
sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus... 62 4e-009
sp|Q8WXF0|SF13B_HUMAN Splicing factor, arginine/serine-rich 13B ... 61 7e-009
sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing prot... 59 3e-008
sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELA... 59 3e-008
sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Ela... 59 3e-008
sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa O... 59 3e-008
sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sa... 59 4e-008
sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus mus... 59 4e-008
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis
GN=cirbp PE=2 SV=1
Length = 166
Score = 72 bits (176), Expect = 3e-012
Identities = 34/73 (46%), Positives = 52/73 (71%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LFV G++F +TEE+L Q FS+YG+V V VV D+ R +GF +V F + E+A +A++ +
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis
GN=cirbp-b PE=1 SV=1
Length = 166
Score = 69 bits (166), Expect = 4e-011
Identities = 30/73 (41%), Positives = 51/73 (69%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LF+ G++F + EE+L Q FS+YG++ V VV D+ R +GF +V F + ++A +A++ +
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 67 NGKAVDGRQIRVD 79
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis
GN=cirbp-a PE=1 SV=2
Length = 166
Score = 68 bits (164), Expect = 7e-011
Identities = 30/73 (41%), Positives = 51/73 (69%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LF+ G++F + E+ L QAF++YGR+ V VV D+ R +GF +V F + ++A +A++ +
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 67 NGKSVDGRQIRVD 79
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens
GN=CIRBP PE=1 SV=1
Length = 172
Score = 68 bits (164), Expect = 7e-011
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LFV G+SF + E++L Q FS+YG++ V VV D+ R +GF +V F + ++A +A++ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii
GN=CIRBP PE=2 SV=1
Length = 172
Score = 68 bits (164), Expect = 7e-011
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LFV G+SF + E++L Q FS+YG++ V VV D+ R +GF +V F + ++A +A++ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus
GN=CIRBP PE=2 SV=1
Length = 172
Score = 67 bits (163), Expect = 9e-011
Identities = 31/73 (42%), Positives = 50/73 (68%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LFV G+SF + E+ L Q FS+YG++ V VV D+ R +GF +V F + ++A +A++ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus
GN=Cirbp PE=1 SV=1
Length = 172
Score = 67 bits (163), Expect = 9e-011
Identities = 31/73 (42%), Positives = 50/73 (68%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LFV G+SF + E+ L Q FS+YG++ V VV D+ R +GF +V F + ++A +A++ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus
GN=Cirbp PE=2 SV=1
Length = 172
Score = 67 bits (163), Expect = 9e-011
Identities = 31/73 (42%), Positives = 50/73 (68%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LFV G+SF + E+ L Q FS+YG++ V VV D+ R +GF +V F + ++A +A++ +
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 68 NGKSVDGRQIRVD 80
>sp|Q9PTX2|CIRBP_RANCA Cold-inducible RNA-binding protein OS=Rana catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 64 bits (155), Expect = 8e-010
Identities = 31/73 (42%), Positives = 48/73 (65%)
Frame = +1
Query: 88 LFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQL 267
LFV G+SF + E+ L FS+YG++ V VV D+ R +GF +V F + E+A +A+ +
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 268 NGQLVDGRVVVLD 306
NG+ VDGR + +D
Sbjct: 68 NGKTVDGRQIRVD 80
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza
sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 63 bits (152), Expect = 2e-009
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +1
Query: 79 STTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEAL 258
S +FV GI + TE L F+QYG V+ VN+V DK + KGFA++ + + A+
Sbjct: 35 SAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAV 94
Query: 259 LQLNGQLVDGRVVVLDTTKTVKQKDQPD 342
LNG V GR+V +D K+K++ D
Sbjct: 95 DNLNGAKVLGRIVRVDHVSKYKKKEEED 122
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42
OS=Arabidopsis thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 62 bits (149), Expect = 4e-009
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +1
Query: 76 SSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEA 255
+S ++V GI F TE L FSQYG ++ VN++ DK + KGFA++ + + A
Sbjct: 34 NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 256 LLQLNGQLVDGRVVVLDTTKTVKQKDQPD 342
+ LNG LV GR + +D K+ ++ D
Sbjct: 94 VDNLNGALVLGRTIKVDHCGAYKKHEEED 122
>sp|Q13595|TRA2A_HUMAN Transformer-2 protein homolog alpha OS=Homo sapiens
GN=TRA2A PE=1 SV=1
Length = 282
Score = 62 bits (149), Expect = 4e-009
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = +1
Query: 79 STTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEAL 258
+T L V G+S +TE L + FS+YG + GVNVV D+ R +GFA+V F +++ EA+
Sbjct: 118 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 177
Query: 259 LQLNGQLVDGRVVVLDTTKT 318
+ NG +DGR + +D + T
Sbjct: 178 ERANGMELDGRRIRVDYSIT 197
>sp|Q6PFR5|TRA2A_MOUSE Transformer-2 protein homolog alpha OS=Mus musculus
GN=Tra2a PE=1 SV=1
Length = 281
Score = 62 bits (149), Expect = 4e-009
Identities = 33/80 (41%), Positives = 51/80 (63%)
Frame = +1
Query: 79 STTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEAL 258
+T L V G+S +TE L + FS+YG + GVNVV D+ R +GFA+V F +++ EA+
Sbjct: 116 NTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAM 175
Query: 259 LQLNGQLVDGRVVVLDTTKT 318
+ NG +DGR + +D + T
Sbjct: 176 ERANGMELDGRRIRVDYSIT 195
>sp|Q8WXF0|SF13B_HUMAN Splicing factor, arginine/serine-rich 13B OS=Homo sapiens
GN=SFRS13B PE=1 SV=1
Length = 261
Score = 61 bits (147), Expect = 7e-009
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 7/98 (7%)
Frame = +1
Query: 79 STTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEAL 258
+T+LF++ ++ ++ E L + F +YG ++ V + +D RP+GFAYV+F +A++AL
Sbjct: 9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 259 LQLNGQLVDGRVVVLD-------TTKTVKQKDQPDCKP 351
LN + V GR + + T +K K++ C P
Sbjct: 69 YNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSP 106
>sp|Q6FXP4|MRD1_CANGA Multiple RNA-binding domain-containing protein 1
OS=Candida glabrata GN=MRD1 PE=3 SV=1
Length = 861
Score = 59 bits (142), Expect = 3e-008
Identities = 30/85 (35%), Positives = 50/85 (58%)
Frame = +1
Query: 43 PNPSLVFSRTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYV 222
P+ ++ + LF++ I +SSTE+ + FS YG + V+V +D KGFAYV
Sbjct: 312 PDEEQAIAKIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYV 371
Query: 223 KFSSKEEADEALLQLNGQLVDGRVV 297
F+ EEA +A ++L+ Q+ GR++
Sbjct: 372 LFAKPEEAVQAYIELDKQIFQGRLL 396
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 59 bits (141), Expect = 3e-008
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Frame = +1
Query: 64 SRTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEE 243
S + L+V G+ + T++ L Q FSQYGR++ +++D+V +G +++F + E
Sbjct: 126 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 185
Query: 244 ADEALLQLNGQLVDGRVVVLDTTKTVKQKDQPDCKPKHAV 363
A+EA+ LNGQ G + TVK + P K A+
Sbjct: 186 AEEAIKGLNGQKPSGATEPI----TVKFANNPSQKSSQAL 221
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 59 bits (141), Expect = 3e-008
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Frame = +1
Query: 64 SRTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEE 243
S + L+V G+ + T++ L Q FSQYGR++ +++D+V +G +++F + E
Sbjct: 131 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIE 190
Query: 244 ADEALLQLNGQLVDGRVVVLDTTKTVKQKDQPDCKPKHAV 363
A+EA+ LNGQ G + TVK + P K A+
Sbjct: 191 AEEAIKGLNGQKPSGATEPI----TVKFANNPSQKSSQAL 226
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis
thaliana GN=RNU1 PE=1 SV=1
Length = 427
Score = 59 bits (141), Expect = 3e-008
Identities = 28/96 (29%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Frame = +1
Query: 85 TLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQ 264
TLFV +++ S+E + + F YG + V++V D++ +PKG+A++++ + A Q
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 265 LNGQLVDGRVVVLDTTKTVKQKDQPDCKPKHAVEGV 372
+GQ +DGR V++D + + P+ +P+ G+
Sbjct: 199 ADGQKIDGRRVLVDVE---RGRTVPNWRPRRLGGGL 231
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19
PE=1 SV=2
Length = 960
Score = 59 bits (140), Expect = 4e-008
Identities = 30/88 (34%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +1
Query: 79 STTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEAL 258
S LFV+ + ++STEE L + FS+YG + ++ +D + +PKGFA++ F E A +A
Sbjct: 401 SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAY 460
Query: 259 LQLNGQLVDGRVVVLDTTKTVKQKDQPD 342
+++GQ+ GR++ + T+K++ D
Sbjct: 461 SEVDGQVFQGRMLHV-LPSTIKKEASED 487
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19
PE=1 SV=1
Length = 952
Score = 59 bits (140), Expect = 4e-008
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Frame = +1
Query: 79 STTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEAL 258
S LFV+ +S++S+EE L + FS YG + ++ +D + +PKGFA+V F E A +A
Sbjct: 399 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 458
Query: 259 LQLNGQLVDGRVV-VLDTT 312
+++GQ+ GR++ VL +T
Sbjct: 459 AEVDGQVFQGRMLHVLPST 477
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,872,592,117
Number of Sequences: 518415
Number of Extensions: 81872592117
Number of Successful Extensions: 541474699
Number of sequences better than 0.0: 0
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