BLASTX 7.6.2
Query= UN19884 /QuerySize=781
(780 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G27330.1 | Symbols: | RNA recognition motif (... 156 1e-038
TAIR9_protein||AT1G73530.1 | Symbols: | RNA recognition motif (... 89 2e-018
TAIR9_protein||AT3G46020.1 | Symbols: | RNA-binding protein, pu... 67 9e-012
TAIR9_protein||AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine... 67 9e-012
TAIR9_protein||AT3G47120.1 | Symbols: | RNA recognition motif (... 62 4e-010
TAIR9_protein||AT5G19030.1 | Symbols: | RNA recognition motif (... 61 8e-010
TAIR9_protein||AT5G59860.1 | Symbols: | RNA recognition motif (... 59 2e-009
TAIR9_protein||AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1-70K (... 59 3e-009
TAIR9_protein||AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP... 57 1e-008
TAIR9_protein||AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RB... 57 1e-008
TAIR9_protein||AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RB... 57 1e-008
TAIR9_protein||AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA... 57 2e-008
TAIR9_protein||AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA... 57 2e-008
TAIR9_protein||AT5G19030.2 | Symbols: | RNA recognition motif (... 54 1e-007
TAIR9_protein||AT2G19380.1 | Symbols: | RNA recognition motif (... 53 2e-007
TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDI... 53 2e-007
TAIR9_protein||AT2G43370.1 | Symbols: | U1 small nuclear ribonu... 52 4e-007
TAIR9_protein||AT2G22100.1 | Symbols: | RNA recognition motif (... 52 4e-007
TAIR9_protein||AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / p... 48 5e-006
TAIR9_protein||AT1G13190.1 | Symbols: | RNA recognition motif (... 48 7e-006
>TAIR9_protein||AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:11695350-11696563 REVERSE
Length = 117
Score = 156 bits (394), Expect = 1e-038
Identities = 84/113 (74%), Positives = 96/113 (84%), Gaps = 3/113 (2%)
Frame = +1
Query: 22 SHLLNRSPNPSLVFSRTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCR 201
+ L RS P L+FSR+FSS TLFVKGISFSSTEETLTQAFSQYG+VL V+V+MDK+RCR
Sbjct: 3 TQFLYRSFTP-LLFSRSFSS-TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCR 60
Query: 202 PKGFAYVKFSSKEEADEALLQLNGQLVDGRVVVLDTTKTVKQKDQPDCKPKHA 360
PKGFAYV FSSKEEA++ALL+LN QLVDGRVV+LDTTK K + PD KP HA
Sbjct: 61 PKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKH-NPPDTKPNHA 112
>TAIR9_protein||AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27643801-27645386 REVERSE
Length = 182
Score = 89 bits (220), Expect = 2e-018
Identities = 43/114 (37%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
Frame = +1
Query: 13 IMLSHLLNRSPNPSLVFSRTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKV 192
+++S L+ + S S + T L+V G+SF +TE+TL F Q+G ++ +N+VMDKV
Sbjct: 54 VLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKV 113
Query: 193 RCRPKGFAYVKFSSKEEADEALLQLNGQLVDGRVVVLDTTKTVKQKDQPDCKPK 354
RPKGFA++++ ++EEA +A+ ++G+ +DGRV+ ++ KT + D KP+
Sbjct: 114 ANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKT--RSDMSRAKPR 165
>TAIR9_protein||AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16912511-16913250 REVERSE
Length = 103
Score = 67 bits (163), Expect = 9e-012
Identities = 29/83 (34%), Positives = 54/83 (65%)
Frame = +1
Query: 79 STTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEAL 258
S LFV +S +T+++L Q FS +G++ ++ D RPKGF ++ F S+++A +AL
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 259 LQLNGQLVDGRVVVLDTTKTVKQ 327
L+G++VDGR++ ++ K ++
Sbjct: 66 KSLDGKIVDGRLIFVEVAKNAEE 88
>TAIR9_protein||AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich
RNA-binding protein 3); ATP binding / RNA binding |
chr5:24560870-24562152 FORWARD
Length = 310
Score = 67 bits (163), Expect = 9e-012
Identities = 34/85 (40%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +1
Query: 46 NPSLVFS-RTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYV 222
+PSL + R SS+ LF+ G+++S E++L +AF++YG V+ V++D+ R +GF +V
Sbjct: 27 SPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFV 86
Query: 223 KFSSKEEADEALLQLNGQLVDGRVV 297
F+S E A A+ L+G+ + GRVV
Sbjct: 87 TFTSSEAASSAIQALDGRDLHGRVV 111
>TAIR9_protein||AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE
Length = 353
Score = 62 bits (149), Expect = 4e-010
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +1
Query: 76 SSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEA 255
+S ++V GI F TE L FSQYG ++ VN++ DK + KGFA++ + + A
Sbjct: 34 NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 256 LLQLNGQLVDGRVVVLDTTKTVKQKDQPD 342
+ LNG LV GR + +D K+ ++ D
Sbjct: 94 VDNLNGALVLGRTIKVDHCGAYKKHEEED 122
>TAIR9_protein||AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357503-6359081 REVERSE
Length = 173
Score = 61 bits (146), Expect = 8e-010
Identities = 29/76 (38%), Positives = 50/76 (65%)
Frame = +1
Query: 76 SSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEA 255
S ++LFVKG S S +E L + FS++G+V V ++ ++ + G+ YV F+SKE+A A
Sbjct: 75 SISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSA 134
Query: 256 LLQLNGQLVDGRVVVL 303
+ +NG+ DGR +++
Sbjct: 135 VEAMNGKFFDGRFILV 150
>TAIR9_protein||AT5G59860.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:24113462-24114449 FORWARD
Length = 158
Score = 59 bits (142), Expect = 2e-009
Identities = 27/75 (36%), Positives = 51/75 (68%), Gaps = 5/75 (6%)
Frame = +1
Query: 100 GISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQLNGQL 279
G+S +T+++L Q F+ + R ++ D+ RPKGF ++ F S+++A +AL LNG++
Sbjct: 77 GLSAYTTDQSLRQLFAPFAR-----LIKDQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 280 VDGRVVVLDTTKTVK 324
V+GR++ ++T K V+
Sbjct: 132 VNGRLIFVETAKEVE 146
>TAIR9_protein||AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1-70K (U1 SMALL
NUCLEAR RIBONUCLEOPROTEIN-70K); RNA binding / nucleic acid binding /
nucleotide binding | chr3:18826476-18829492 REVERSE
Length = 428
Score = 59 bits (141), Expect = 3e-009
Identities = 28/96 (29%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Frame = +1
Query: 85 TLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQ 264
TLFV +++ S+E + + F YG + V++V D++ +PKG+A++++ + A Q
Sbjct: 139 TLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQ 198
Query: 265 LNGQLVDGRVVVLDTTKTVKQKDQPDCKPKHAVEGV 372
+GQ +DGR V++D + + P+ +P+ G+
Sbjct: 199 ADGQKIDGRRVLVDVE---RGRTVPNWRPRRLGGGL 231
>TAIR9_protein||AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8;
RNA binding / nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 170
Score = 57 bits (136), Expect = 1e-008
Identities = 23/76 (30%), Positives = 50/76 (65%)
Frame = +1
Query: 91 FVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQLN 270
FV G+++++ +E L + FSQ+G V+ ++ D+ R +GF +V F ++ +A+ ++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 271 GQLVDGRVVVLDTTKT 318
G+ +DGRV+ ++ ++
Sbjct: 69 GKELDGRVITVNEAQS 84
>TAIR9_protein||AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding
/ nucleic acid binding / nucleotide binding | chr4:18274166-18274958
REVERSE
Length = 127
Score = 57 bits (136), Expect = 1e-008
Identities = 23/76 (30%), Positives = 50/76 (65%)
Frame = +1
Query: 91 FVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQLN 270
FV G+++++ +E L + FSQ+G V+ ++ D+ R +GF +V F ++ +A+ ++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 271 GQLVDGRVVVLDTTKT 318
G+ +DGRV+ ++ ++
Sbjct: 69 GKELDGRVITVNEAQS 84
>TAIR9_protein||AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding
/ nucleic acid binding / nucleotide binding | chr4:18274166-18274958
REVERSE
Length = 93
Score = 57 bits (136), Expect = 1e-008
Identities = 23/76 (30%), Positives = 50/76 (65%)
Frame = +1
Query: 91 FVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQLN 270
FV G+++++ +E L + FSQ+G V+ ++ D+ R +GF +V F ++ +A+ ++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 271 GQLVDGRVVVLDTTKT 318
G+ +DGRV+ ++ ++
Sbjct: 69 GKELDGRVITVNEAQS 84
>TAIR9_protein||AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA binding /
nucleic acid binding / nucleotide binding | chr5:25681849-25683553
REVERSE
Length = 304
Score = 57 bits (135), Expect = 2e-008
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +1
Query: 85 TLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQ 264
+L V I+F +T + L F++YG+V+ V + D+ +GFA+V++ K+EA +A+ +
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 265 LNGQLVDGRVVVLDTTK 315
L+G++VDGR + + K
Sbjct: 77 LDGRVVDGREITVQFAK 93
>TAIR9_protein||AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA binding /
nucleic acid binding / nucleotide binding | chr5:25681849-25683553
REVERSE
Length = 304
Score = 57 bits (135), Expect = 2e-008
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +1
Query: 85 TLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQ 264
+L V I+F +T + L F++YG+V+ V + D+ +GFA+V++ K+EA +A+ +
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 265 LNGQLVDGRVVVLDTTK 315
L+G++VDGR + + K
Sbjct: 77 LDGRVVDGREITVQFAK 93
>TAIR9_protein||AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357570-6359024 REVERSE
Length = 127
Score = 54 bits (127), Expect = 1e-007
Identities = 26/68 (38%), Positives = 45/68 (66%)
Frame = +1
Query: 76 SSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEA 255
S ++LFVKG S S +E L + FS++G+V V ++ ++ + G+ YV F+SKE+A A
Sbjct: 56 SISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSA 115
Query: 256 LLQLNGQL 279
+ +NG++
Sbjct: 116 VEAMNGKV 123
>TAIR9_protein||AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD
Length = 614
Score = 53 bits (125), Expect = 2e-007
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +1
Query: 67 RTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEA 246
R + +FV+G + +T+E L AF YG + +VVMDK R KG+ +V F +++ A
Sbjct: 403 RDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGA 462
Query: 247 DEALLQLNGQLVDGRVVV 300
EAL + ++ + R+VV
Sbjct: 463 REALKRPEKRMYN-RIVV 479
>TAIR9_protein||AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6);
RNA binding / translation initiation factor | chr3:5558676-5560993
REVERSE
Length = 538
Score = 53 bits (125), Expect = 2e-007
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +1
Query: 82 TTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALL 261
+ L+VK +S S E L + F YG+++ V+ + R KGF +V FS+ EE+ +A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKR 362
Query: 262 QLNGQLVDGRVVVL 303
LNG LVDG+ +V+
Sbjct: 363 YLNGFLVDGKPIVV 376
>TAIR9_protein||AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18013431-18015376 FORWARD
Length = 334
Score = 52 bits (123), Expect = 4e-007
Identities = 24/74 (32%), Positives = 45/74 (60%)
Frame = +1
Query: 85 TLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEADEALLQ 264
TLFV +S +TE+TL + S+YGR+ + +V V +G+ +V++ +++E A
Sbjct: 65 TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124
Query: 265 LNGQLVDGRVVVLD 306
+ L+DGR +++D
Sbjct: 125 AHHSLIDGREIIVD 138
>TAIR9_protein||AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9392397-9393545 REVERSE
Length = 383
Score = 52 bits (123), Expect = 4e-007
Identities = 31/100 (31%), Positives = 49/100 (49%)
Frame = +1
Query: 67 RTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEA 246
R S +FV+G+ + +T E L AF YG + +VVMDK R KGF +V F +++ A
Sbjct: 158 RDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGA 217
Query: 247 DEALLQLNGQLVDGRVVVLDTTKTVKQKDQPDCKPKHAVE 366
AL ++ + V L K + +P +V+
Sbjct: 218 RAALKNPEKRMYNRTVSCLPARPFNSGKPREQQQPVESVK 257
>TAIR9_protein||AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / protein binding
| chr1:19103072-19104753 REVERSE
Length = 203
Score = 48 bits (113), Expect = 5e-006
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +1
Query: 67 RTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPKGFAYVKFSSKEEA 246
R+ + V G+ + EE +T AF +G + +N+ +D+ KG+A +++ KEEA
Sbjct: 90 RSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEA 149
Query: 247 DEALLQLNG 273
A+ +NG
Sbjct: 150 QSAISAMNG 158
>TAIR9_protein||AT1G13190.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:4499633-4501354 FORWARD
Length = 574
Score = 48 bits (112), Expect = 7e-006
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Frame = +1
Query: 28 LLNRSPNPSLVFSRTFSSTTLFVKGISFSSTEETLTQAFSQYGRVLGVNVVMDKVRCRPK 207
++N+SP S V +T LFV + + +T+ + SQYGRV + ++V + K
Sbjct: 186 MMNKSPTQSFVVDN--GNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSK 243
Query: 208 GFAYVKFSSKEEADEALLQLNGQLVDGR--VVVLDTTKTVKQ 327
G+ V+F A +NG + +G+ VV + +T+KQ
Sbjct: 244 GYCQVEFYDSAAAAACKEGMNGFIFNGKACVVAFASPETLKQ 285
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,372,867,301
Number of Sequences: 33410
Number of Extensions: 10372867301
Number of Successful Extensions: 348709919
Number of sequences better than 0.0: 0
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