BLASTX 7.6.2
Query= UN20002 /QuerySize=893
(892 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G62440.1 | Symbols: | Encodes a protein DOMIN... 324 8e-089
TAIR9_protein||AT1G45230.1 | Symbols: | defective chloroplasts ... 53 3e-007
TAIR9_protein||AT1G45230.2 | Symbols: | defective chloroplasts ... 52 3e-007
>TAIR9_protein||AT5G62440.1 | Symbols: | Encodes a protein DOMINO1 that belongs
to a plant-specific gene family sharing a common motif present in the
tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is
located in the nucleus. Arabidopsis embryos carrying the domino1
mutation grow slowly in comparison with wild type embryos and reach
only the globular stage at desiccation. The primary defect of the
mutation at the cellular level is the large size of the nucleolus that
can be observed soon after fertilization in the nuclei of both the
embryo and the endosperm. DOMINO1 might have a role in ribosome
biogenesis and in determining the rate of cell division. |
chr5:25072620-25073917 REVERSE
Length = 203
Score = 324 bits (828), Expect = 8e-089
Identities = 166/208 (79%), Positives = 175/208 (84%), Gaps = 18/208 (8%)
Frame = +3
Query: 81 MAEQQEILDSVSAAEVKPDPITDTEVEEAA-------EKRGREETTEETEDGGESKKQKV 239
MAE+QEI+DS+S AEV PD D EVE A EKR REE TEE E+GGESKKQKV
Sbjct: 1 MAEEQEIVDSLS-AEVNPDQKVDMEVETATPKAETGDEKREREE-TEEEENGGESKKQKV 58
Query: 240 GEEEKPNGSDPVKLGPKEFVTSVAMFDYFTKFMHFWPTDLDVNKYEHMVLLDLIKKGHTE 419
GEEEK S PVKLGPKEFVTSVAMFDYF KF+HFWPTDLDVNKYEHMVLLDLIKKGH+E
Sbjct: 59 GEEEK---SGPVKLGPKEFVTSVAMFDYFVKFLHFWPTDLDVNKYEHMVLLDLIKKGHSE 115
Query: 420 PDNKIGGGIKGFQVRTHPMWKSRCFFLVREDDTADDFSYRKCVDHILPLPENMKTPGSNG 599
P+ KIGGGIK FQVRTHPMWKSRCFFLVREDDTADDFS+RKCVD ILPLPENMKTPG+NG
Sbjct: 116 PEKKIGGGIKTFQVRTHPMWKSRCFFLVREDDTADDFSFRKCVDQILPLPENMKTPGANG 175
Query: 600 NGH------GGGRRGGRGGGRGGRFRR* 665
NGH GGGRRGGRGGGRGGRFRR*
Sbjct: 176 NGHGGGRGGGGGRRGGRGGGRGGRFRR* 203
>TAIR9_protein||AT1G45230.1 | Symbols: | defective chloroplasts and leaves
protein-related / DCL protein-related | chr1:17169874-17171381 REVERSE
Length = 220
Score = 53 bits (125), Expect = 3e-007
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Frame = +3
Query: 186 EETTEETEDGGESKKQKVGEEEKPNGSDPVKLGPKEFVTSVAMFDYFTKFMHFWP-TDLD 362
EE++EE E+ EEE G + V K +V + + +H + D
Sbjct: 78 EESSEEEEE---------EEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRD 128
Query: 363 VNKYEH-MVLLDLIKKGHTEPDNKIGGGIKGFQVRTHPMWK-SRCFFLVREDDTADDFSY 536
EH +++++ H E + KIG GI V HP ++ SRC F+VR+D DFSY
Sbjct: 129 RLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSY 188
Query: 537 RKCVDHIL 560
KC+ ++
Sbjct: 189 WKCIKGLI 196
>TAIR9_protein||AT1G45230.2 | Symbols: | defective chloroplasts and leaves
protein-related / DCL protein-related | chr1:17169874-17171381 REVERSE
Length = 220
Score = 52 bits (124), Expect = 3e-007
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Frame = +3
Query: 186 EETTEETEDGGESKKQKVGEEEKPNGSDPVKLGPKEFVTSVAMFDYFTKFMHFWP-TDLD 362
EE++EE E+ EEE G + V K +V + + +H + D
Sbjct: 78 EESSEEEEE---------EEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRD 128
Query: 363 VNKYEH-MVLLDLIKKGHTEPDNKIGGGIKGFQVRTHPMWK-SRCFFLVREDDTADDFSY 536
EH +++++ H E + KIG GI V HP ++ SRC F+VR+D DFSY
Sbjct: 129 RLSPEHERTIIEMLLPYHPECEKKIGCGIDYIMVWHHPDFESSRCMFIVRKDGEVVDFSY 188
Query: 537 RKCVDHIL 560
KC+ ++
Sbjct: 189 WKCIKGLI 196
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,372,867,301
Number of Sequences: 33410
Number of Extensions: 10372867301
Number of Successful Extensions: 348709919
Number of sequences better than 0.0: 0
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