BLASTX 7.6.2
Query= UN20012 /QuerySize=1015
(1014 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G76940.1 | Symbols: | RNA recognition motif (... 260 1e-069
TAIR9_protein||AT1G21320.1 | Symbols: | nucleic acid binding / ... 225 4e-059
TAIR9_protein||AT1G21320.2 | Symbols: | nucleic acid binding / ... 225 4e-059
TAIR9_protein||AT3G13700.2 | Symbols: | RNA-binding protein, pu... 52 5e-007
>TAIR9_protein||AT1G76940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28902707-28904085 REVERSE
Length = 234
Score = 260 bits (664), Expect = 1e-069
Identities = 145/243 (59%), Positives = 161/243 (66%), Gaps = 26/243 (10%)
Frame = -1
Query: 969 MGDGYWNQPPMSSIPHGGPLKRHRSDFE-----------HDYVSRDEDRGILHSVRDTRT 823
M DGYWNQ P GGP+KR RSDFE Y RDED V DTRT
Sbjct: 1 MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDEDL----DVPDTRT 56
Query: 822 IGSAYDRYLQSAQTSSRPSEEAGRYHGVGRGG-----DMGELMSGRGGVQHPDFGPPNGR 658
IGSAYDRYLQS Q+ S GR G G GG + + M RGGV D G PNG
Sbjct: 57 IGSAYDRYLQSVQSGEGGSVSMGRSGGGGGGGGGNVQTIDDFMLRRGGVLPLDHG-PNGH 115
Query: 657 DLGFGQQDLVGRPGRELLRLPPDASNTLFVEGLPSNCSRREVSHIFRPFLGYKEARLVTK 478
+GF + VGR LP DASNTL+VEGLPSNCSRREV+HIFRPF+GY+E RLVTK
Sbjct: 116 TIGFDPPEPVGR-----RNLPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTK 170
Query: 477 DTKQRNGDPVVLCFVDFESPACAATARTALQGYRMDENEPDSKNLQIQFSRNPGRRAGQR 298
D+K RNGDP+VLCFVDF +PACAATA +ALQGYRMDENE DSK L++QFSR PG R GQR
Sbjct: 171 DSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKPGSRPGQR 230
Query: 297 GGR 289
G R
Sbjct: 231 GRR 233
>TAIR9_protein||AT1G21320.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr1:7462834-7465200 REVERSE
Length = 422
Score = 225 bits (573), Expect = 4e-059
Identities = 111/150 (74%), Positives = 124/150 (82%), Gaps = 1/150 (0%)
Frame = -1
Query: 732 GGDMGELMSGRGGVQHPDFGPPNGRDLGFGQQDLVGRPGRELLRLPPDASNTLFVEGLPS 553
G MGELM+G GG DF PNGRD+GFGQ D VGRPGRE LPPD SNTL+VEGLPS
Sbjct: 274 GPSMGELMAGCGGSLPSDF-RPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPS 332
Query: 552 NCSRREVSHIFRPFLGYKEARLVTKDTKQRNGDPVVLCFVDFESPACAATARTALQGYRM 373
NCSRREVSHIFRPF+GY+E RLVT+D+K R+GDP VLCFVDFE+ ACAATA +ALQ YRM
Sbjct: 333 NCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRM 392
Query: 372 DENEPDSKNLQIQFSRNPGRRAGQRGGRR* 283
DE+EPDSK L++QF RNPG R GQRGGRR*
Sbjct: 393 DEDEPDSKILRLQFFRNPGPRPGQRGGRR* 422
Score = 79 bits (192), Expect = 5e-015
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = -1
Query: 885 HDYVSRDEDRGILHSVRDTRTIGSAYDRYLQSAQTSSRPSEEAGRYHGVG 736
H Y+S+DEDRGI HSV+DTR+IGSAYDRYLQS QT PSEEAG ++GVG
Sbjct: 213 HSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVG 262
>TAIR9_protein||AT1G21320.2 | Symbols: | nucleic acid binding / nucleotide
binding | chr1:7462834-7466164 REVERSE
Length = 254
Score = 225 bits (573), Expect = 4e-059
Identities = 111/150 (74%), Positives = 124/150 (82%), Gaps = 1/150 (0%)
Frame = -1
Query: 732 GGDMGELMSGRGGVQHPDFGPPNGRDLGFGQQDLVGRPGRELLRLPPDASNTLFVEGLPS 553
G MGELM+G GG DF PNGRD+GFGQ D VGRPGRE LPPD SNTL+VEGLPS
Sbjct: 106 GPSMGELMAGCGGSLPSDF-RPNGRDMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPS 164
Query: 552 NCSRREVSHIFRPFLGYKEARLVTKDTKQRNGDPVVLCFVDFESPACAATARTALQGYRM 373
NCSRREVSHIFRPF+GY+E RLVT+D+K R+GDP VLCFVDFE+ ACAATA +ALQ YRM
Sbjct: 165 NCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRM 224
Query: 372 DENEPDSKNLQIQFSRNPGRRAGQRGGRR* 283
DE+EPDSK L++QF RNPG R GQRGGRR*
Sbjct: 225 DEDEPDSKILRLQFFRNPGPRPGQRGGRR* 254
Score = 79 bits (192), Expect = 5e-015
Identities = 37/50 (74%), Positives = 43/50 (86%)
Frame = -1
Query: 885 HDYVSRDEDRGILHSVRDTRTIGSAYDRYLQSAQTSSRPSEEAGRYHGVG 736
H Y+S+DEDRGI HSV+DTR+IGSAYDRYLQS QT PSEEAG ++GVG
Sbjct: 45 HSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVG 94
>TAIR9_protein||AT3G13700.2 | Symbols: | RNA-binding protein, putative |
chr3:4490859-4492632 REVERSE
Length = 288
Score = 52 bits (123), Expect = 5e-007
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = -1
Query: 621 PGRELLRLPPDASNTLFVEGLPSNCSRREVSHIFRPFLGYKEARLVTKDTKQRNGDPVVL 442
P LL P A NTLFV GLP++ RE+ ++FR G++ +L K T + GD VV
Sbjct: 24 PQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGFESCQL--KYTGR--GDQVV- 78
Query: 441 CFVDFESPACAATARTALQGYRMDENEPDSKNLQIQFSRNPGRRAGQRG 295
F F S A A L G + D NL I+ +R+ RR + G
Sbjct: 79 AFATFTSHRFALAAMNELNGVKFDPQ--TGSNLHIELARSNSRRKERPG 125
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,372,867,301
Number of Sequences: 33410
Number of Extensions: 10372867301
Number of Successful Extensions: 348709919
Number of sequences better than 0.0: 0
|