BLASTX 7.6.2
Query= UN20187 /QuerySize=1142
(1141 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabi... 471 1e-130
gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis ... 396 6e-108
gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis ... 395 8e-108
gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thal... 354 2e-095
gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thal... 354 2e-095
gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabid... 353 5e-095
gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thali... 352 8e-095
gi|225452270|ref|XP_002270233.1| PREDICTED: hypothetical protein... 342 6e-092
gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vini... 342 8e-092
gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT... 339 7e-091
gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast,... 336 4e-090
gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum c... 335 1e-089
gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Me... 335 1e-089
gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Perse... 332 6e-089
gi|224133740|ref|XP_002321649.1| predicted protein [Populus tric... 330 2e-088
gi|224119514|ref|XP_002318093.1| predicted protein [Populus tric... 328 2e-087
gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vini... 324 2e-086
gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B... 322 9e-086
gi|225456840|ref|XP_002278832.1| PREDICTED: hypothetical protein... 321 2e-085
gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 ... 320 4e-085
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata
subsp. lyrata]
Length = 305
Score = 471 bits (1211), Expect = 1e-130
Identities = 253/312 (81%), Positives = 270/312 (86%), Gaps = 19/312 (6%)
Frame = +1
Query: 31 MASSIVTSSLRPLAMSESSSSTTFSHPSF-STFHSSKTRC---SLLTKRTNLPLSF---- 186
MASSIVTSSL+PLAM++SSSST FSHPS ST SS+ RC SLLT NLPLSF
Sbjct: 1 MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRCSNVSLLTGHINLPLSFSRFS 60
Query: 187 ----SLKSKTHLKKSPFVTLVAETSDWSGEEDGSSSSVAVEESDPEEATFSEGEGDVSEG 354
SLKSKTHLKKSPFV+ VA+TSDW+ E+G SVAVEE++ + + EGDVSE
Sbjct: 61 RFSLSLKSKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEENE-DSFESQDAEGDVSE- 116
Query: 355 GGGGGDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFV 534
G +F EP EEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFV
Sbjct: 117 ---GAEFPEPSEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFV 173
Query: 535 TMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVD 714
TMSTVEEAETAVEKFNRYDLNGRLLTVNKAAP+GSRPER PRVYEPAFRVYVGNLPWDVD
Sbjct: 174 TMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVD 233
Query: 715 SGRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIR 894
+GRLEQVFSEHGKVVEA+VVYDRETGRSRGFGFVTMSNE ELNDA+AALDGQNMEGRAIR
Sbjct: 234 NGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAALDGQNMEGRAIR 293
Query: 895 VNVAEERPRRGF 930
VNVAEERPRRGF
Sbjct: 294 VNVAEERPRRGF 305
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 396 bits (1015), Expect = 6e-108
Identities = 219/312 (70%), Positives = 249/312 (79%), Gaps = 14/312 (4%)
Frame = +1
Query: 16 LLSLTMASSIVTSSLRPLAMSESSSSTTFSHPSFSTFHSSKTRCSLLTKRTNLPLSFSLK 195
L L MA S ++ ++S + SS+ S S + + L R +S SLK
Sbjct: 10 LKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLL-TGRINLPLSFSR----VSLSLK 64
Query: 196 SKTHLKKSPFVTLVAETSDWSGEEDGSSSSVAVEESDP--EEATFSEG---EGDVSEGG- 357
+KTHLKKSPFV+ VA+TSDW+ E+G SVAVEE++ E SEG EGDVSEG
Sbjct: 65 TKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDVSEGAV 122
Query: 358 GGGGDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 537
+F EP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT
Sbjct: 123 SERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 182
Query: 538 MSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDS 717
MS+V+EAETAVEKFNRYDLNGRLLTVNKAAP+GSRPER PRVYEPAFRVYVGNLPWDVD+
Sbjct: 183 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 242
Query: 718 GRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRV 897
GRLEQ+FSEHGKVVEA+VVYDRETGRSRGFGFVTMS+ ELN+A++ALDGQN+EGRAIRV
Sbjct: 243 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 302
Query: 898 NVAEER-PRRGF 930
NVAEER PRRG+
Sbjct: 303 NVAEERPPRRGY 314
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 395 bits (1014), Expect = 8e-108
Identities = 218/309 (70%), Positives = 248/309 (80%), Gaps = 14/309 (4%)
Frame = +1
Query: 25 LTMASSIVTSSLRPLAMSESSSSTTFSHPSFSTFHSSKTRCSLLTKRTNLPLSFSLKSKT 204
L MA S ++ ++S + SS+ S S + + L R +S SLK+KT
Sbjct: 3 LAMADSSSSTIFSHPSISSTISSSRIRSSSVSLL-TGRINLPLSFSR----VSLSLKTKT 57
Query: 205 HLKKSPFVTLVAETSDWSGEEDGSSSSVAVEESDP--EEATFSEG---EGDVSEGG-GGG 366
HLKKSPFV+ VA+TSDW+ E+G SVAVEE++ E SEG EGDVSEG
Sbjct: 58 HLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDVSEGAVSER 115
Query: 367 GDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMST 546
+F EP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS+
Sbjct: 116 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 175
Query: 547 VEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRL 726
V+EAETAVEKFNRYDLNGRLLTVNKAAP+GSRPER PRVYEPAFRVYVGNLPWDVD+GRL
Sbjct: 176 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 235
Query: 727 EQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVA 906
EQ+FSEHGKVVEA+VVYDRETGRSRGFGFVTMS+ ELN+A++ALDGQN+EGRAIRVNVA
Sbjct: 236 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 295
Query: 907 EER-PRRGF 930
EER PRRG+
Sbjct: 296 EERPPRRGY 304
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 329
Score = 354 bits (908), Expect = 2e-095
Identities = 201/309 (65%), Positives = 233/309 (75%), Gaps = 13/309 (4%)
Frame = +1
Query: 19 LSLTMASSIVTSSLRPLAMSESSSSTTFSHPSFSTFHSSKTRCSLLTKRTNLPLSFSLKS 198
+S T++SS + SS L + +FS S S KT+ L + + +SF ++
Sbjct: 29 ISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSL----KTKTHL---KKSPFVSFVAQT 81
Query: 199 KTHLKKSPFVTLVAETSDWSGEEDGSSSSVAVEESDPEEATFSEG---EGDVSEGG-GGG 366
++ ++ E ++ S E S E D E SEG EGDVSEG
Sbjct: 82 SDWAEEGGEGSVAVEETENSLESQDVSEG-DESEGDASEGDVSEGDESEGDVSEGAVSER 140
Query: 367 GDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMST 546
+F EP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS+
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 547 VEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRL 726
V+EAETAVEKFNRYDLNGRLLTVNKAAP+GSRPER PRVYEPAFRVYVGNLPWDVD+GRL
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 727 EQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVA 906
EQ+FSEHGKVVEA+VVYDRETGRSRGFGFVTMS+ ELN+A++ALDGQN+EGRAIRVNVA
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Query: 907 EER-PRRGF 930
EER PRRG+
Sbjct: 321 EERPPRRGY 329
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 354 bits (908), Expect = 2e-095
Identities = 201/309 (65%), Positives = 233/309 (75%), Gaps = 13/309 (4%)
Frame = +1
Query: 19 LSLTMASSIVTSSLRPLAMSESSSSTTFSHPSFSTFHSSKTRCSLLTKRTNLPLSFSLKS 198
+S T++SS + SS L + +FS S S KT+ L + + +SF ++
Sbjct: 15 ISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSL----KTKTHL---KKSPFVSFVAQT 67
Query: 199 KTHLKKSPFVTLVAETSDWSGEEDGSSSSVAVEESDPEEATFSEG---EGDVSEGG-GGG 366
++ ++ E ++ S E S E D E SEG EGDVSEG
Sbjct: 68 SDWAEEGGEGSVAVEETENSLESQDVSEG-DESEGDASEGDVSEGDESEGDVSEGAVSER 126
Query: 367 GDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMST 546
+F EP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS+
Sbjct: 127 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 186
Query: 547 VEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRL 726
V+EAETAVEKFNRYDLNGRLLTVNKAAP+GSRPER PRVYEPAFRVYVGNLPWDVD+GRL
Sbjct: 187 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 246
Query: 727 EQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVA 906
EQ+FSEHGKVVEA+VVYDRETGRSRGFGFVTMS+ ELN+A++ALDGQN+EGRAIRVNVA
Sbjct: 247 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 306
Query: 907 EER-PRRGF 930
EER PRRG+
Sbjct: 307 EERPPRRGY 315
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis
thaliana]
Length = 329
Score = 353 bits (904), Expect = 5e-095
Identities = 199/306 (65%), Positives = 230/306 (75%), Gaps = 12/306 (3%)
Frame = +1
Query: 19 LSLTMASSIVTSSLRPLAMSESSSSTTFSHPSFSTFHSSKTRCSLLTKRTNLPLSFSLKS 198
+S T++SS + SS L + +FS S S KT+ L + + +SF ++
Sbjct: 29 ISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSL----KTKTHL---KKSPFVSFVAQT 81
Query: 199 KTHLKKSPFVTLVAETSDWSGEEDGSSSSVAVEESDPEEATFSEG---EGDVSEGG-GGG 366
++ ++ E ++ S E S E D E SEG EGDVSEG
Sbjct: 82 SDWAEEGGEGSVAVEETENSLESQDVSEG-DESEGDASEGDVSEGDESEGDVSEGAVSER 140
Query: 367 GDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMST 546
+F EP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS+
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 547 VEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRL 726
V+EAETAVEKFNRYDLNGRLLTVNKAAP+GSRPER PRVYEPAFRVYVGNLPWDVD+GRL
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 727 EQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVA 906
EQ+FSEHGKVVEA+VVYDRETGRSRGFGFVTMS+ ELN+A++ALDGQN+EGRAIRVNVA
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Query: 907 EERPRR 924
EERP R
Sbjct: 321 EERPPR 326
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 352 bits (902), Expect = 8e-095
Identities = 186/237 (78%), Positives = 203/237 (85%), Gaps = 7/237 (2%)
Frame = +1
Query: 235 VAETSDWSGEEDGSSSSVAVEESDPEEATFSEG---EGDVSEGG-GGGGDFQEPPEEAKL 402
V ET + +D S + E D E SEG EGDVSEG +F EP EEAKL
Sbjct: 76 VEETENSLESQDVSEGDES--EGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKL 133
Query: 403 FVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFN 582
FVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS+V+EAETAVEKFN
Sbjct: 134 FVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFN 193
Query: 583 RYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRLEQVFSEHGKVVE 762
RYDLNGRLLTVNKAAP+GSRPER PRVYEPAFRVYVGNLPWDVD+GRLEQ+FSEHGKVVE
Sbjct: 194 RYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVE 253
Query: 763 AKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVAEER-PRRGF 930
A+VVYDRETGRSRGFGFVTMS+ ELN+A++ALDGQN+EGRAIRVNVAEER PRRG+
Sbjct: 254 ARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 310
>gi|225452270|ref|XP_002270233.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 312
Score = 342 bits (877), Expect = 6e-092
Identities = 189/321 (58%), Positives = 221/321 (68%), Gaps = 33/321 (10%)
Frame = +1
Query: 13 LLLSLTMASSIVTSSLRPLAMSESSSSTTFSHPSFS-------TFHSSKTRCSLLTKRTN 171
LL +MA S +TS + + +T HP S FH S CS + +
Sbjct: 7 LLKPFSMAESCLTS------VPTTLFTTKTPHPLLSLPPKPVRLFHLS---CSCSSSWVS 57
Query: 172 LPLSFSLKSKTHLKKSPFVTLVAETSDWSGEED---------GSSSSVAVEESDPEEATF 324
L KT + V VA+TSDW+ +E+ S +E S EEA
Sbjct: 58 L--------KTKTSPTTLVPFVAQTSDWAQQEEEEEKGGLTWDSEGGEEIEASGSEEAWE 109
Query: 325 SEGEGDVSEGGGGGGDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRE 504
E D E G + EPPEEAKLFVGNL YD+DS+ LA LF++AG VEIAEVIYNRE
Sbjct: 110 GEVGEDGEESEGSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRE 169
Query: 505 TDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRV 684
TDQSRGFGF+TMSTVEEAE AVE FNRYDLNGR LTVNKAAP+GSRPER P+ +EP+FR+
Sbjct: 170 TDQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRI 229
Query: 685 YVGNLPWDVDSGRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALD 864
YVGNLPW VD RLEQVFSEHGKVV+A+VVYDR+T RSRGFGFVTMS+ETELNDA+AALD
Sbjct: 230 YVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALD 289
Query: 865 GQNMEGRAIRVNVAEERPRRG 927
GQ+++GRAIRVNVAEERPRRG
Sbjct: 290 GQSLDGRAIRVNVAEERPRRG 310
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 342 bits (876), Expect = 8e-092
Identities = 177/251 (70%), Positives = 208/251 (82%), Gaps = 8/251 (3%)
Frame = +1
Query: 181 SFSLKSKTHLKKSPFVTLVAETSDWSGEEDGSSSSVAVEESDPEEATFSEGEGDVSEGG- 357
S LKSKT S VT VA+TSDW+ +E+ ++V +EE E+ T+ E E +S+ G
Sbjct: 58 SLFLKSKT--LSSSVVTFVAQTSDWAQQEE--DNTVIIEEEQEEKVTW-ENEEAISDDGV 112
Query: 358 --GGGGDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGF 531
G + EPPEEAK+FVGNL YDVDS+ LA LFEQAG VEIAEVIYNRETD+SRGFGF
Sbjct: 113 VDDGEDSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGF 172
Query: 532 VTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDV 711
V+MSTVEEAE AV+ F+RY+L+GRLLTVNKAAP+GS+PER PRV+EPAFR+YVGNLPWDV
Sbjct: 173 VSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDV 232
Query: 712 DSGRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAI 891
DS RLEQVFSEHGKVVEA+VV+DRETGRSRGFGFVTMS++TEL DA+AA DGQ ++GR I
Sbjct: 233 DSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTI 292
Query: 892 RVNVAEERPRR 924
RVNVAEERPRR
Sbjct: 293 RVNVAEERPRR 303
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033
[Arabidopsis lyrata subsp. lyrata]
Length = 291
Score = 339 bits (868), Expect = 7e-091
Identities = 171/221 (77%), Positives = 191/221 (86%), Gaps = 2/221 (0%)
Frame = +1
Query: 274 SSSSVAVEESDPEEATFSEGEGDVSEG--GGGGGDFQEPPEEAKLFVGNLAYDVDSQALA 447
S +S EE + E+ + V E GG F EPPEEAKLFVGNL YDVDSQALA
Sbjct: 71 SQTSDWPEEEEGEDGSIGGTSVTVDESFDTEDGGKFPEPPEEAKLFVGNLPYDVDSQALA 130
Query: 448 MLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAA 627
MLFEQAGTVEI+EVIYNR+TDQSRGFGFVTMSTVEEA+ AVEKFNRY++NGRLLTVN AA
Sbjct: 131 MLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYEVNGRLLTVNIAA 190
Query: 628 PKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRLEQVFSEHGKVVEAKVVYDRETGRSRGF 807
P+GSRPERQPR Y+ AFR+YVGNLPWDVD+ RL+QVFSEHGKVV+A+VVYDRETGRSRGF
Sbjct: 191 PRGSRPERQPRQYDAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGF 250
Query: 808 GFVTMSNETELNDAVAALDGQNMEGRAIRVNVAEERPRRGF 930
GFVTMSNE E+NDA+AALDGQN+EGRAI+VNVAEERPRRGF
Sbjct: 251 GFVTMSNENEVNDAIAALDGQNLEGRAIKVNVAEERPRRGF 291
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 319
Score = 336 bits (861), Expect = 4e-090
Identities = 166/235 (70%), Positives = 198/235 (84%), Gaps = 5/235 (2%)
Frame = +1
Query: 241 ETSDWSGEEDGSSSSVAVEESDPE-EATFSEGEG----DVSEGGGGGGDFQEPPEEAKLF 405
+ +W G+E + + V + D E E+ +G+G +V EG F+EPPE+AK+F
Sbjct: 85 QEQEWEGQESETETEARVSDWDSEGESAAVDGQGEEEEEVFEGSEPEEAFEEPPEDAKIF 144
Query: 406 VGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNR 585
VGNL YDVDSQ LAMLFEQAGTVEIAEVIYNRETD SRGFGFV+MSTVEEAE AVE F+R
Sbjct: 145 VGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEMFHR 204
Query: 586 YDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRLEQVFSEHGKVVEA 765
+DL+GRLLTVNKAAP+GSRPER PRV+EP +R+YVGNLPWDVD+ RLEQ+FSEHGKVV+A
Sbjct: 205 HDLDGRLLTVNKAAPRGSRPERPPRVFEPGYRIYVGNLPWDVDNARLEQIFSEHGKVVDA 264
Query: 766 KVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVAEERPRRGF 930
+VVYDR+TGRSRGFGFVTMS ETELNDA+AALDG++++GRAIRVNVAE+RPRR F
Sbjct: 265 RVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQRPRRNF 319
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 335 bits (857), Expect = 1e-089
Identities = 172/270 (63%), Positives = 208/270 (77%), Gaps = 13/270 (4%)
Frame = +1
Query: 148 SLLTKRTNLPLSFSLKS--------KTHLKKSPFVTLVAETSDWSGEEDGSSSSVAVEES 303
S+ +K T +PLS SL S + S VT VA+TS+W D ++ +EE
Sbjct: 24 SIPSKPTKIPLSLSLSSPQLSSFSLQKQTLSSTVVTYVAQTSEW----DQEGTNAVLEEG 79
Query: 304 DPEEATFSEGEGDVSEGGGGGGD-FQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEI 480
+E ++ E VS+ G G+ FQEPPE+AKLFVGNL +DVDS+ LA +FE AG VEI
Sbjct: 80 SDQEPSWGNTEAQVSDFGSDEGEGFQEPPEDAKLFVGNLPFDVDSEKLAQIFEGAGVVEI 139
Query: 481 AEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPR 660
AEVIYNRETD+SRGFGFVTMSTVEEAE AVE ++++++NGR LTVNKAAP+GSRPER PR
Sbjct: 140 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVELYHKFEVNGRFLTVNKAAPRGSRPERAPR 199
Query: 661 VYEPAFRVYVGNLPWDVDSGRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETEL 840
YEP+FRVYVGNLPWDVD RLEQVFSEHGKV+ A+VV DRETGRSRGF FVTM++E+E+
Sbjct: 200 EYEPSFRVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEM 259
Query: 841 NDAVAALDGQNMEGRAIRVNVAEERPRRGF 930
N+A+ ALDGQ +EGRAIRVNVAEERPRR F
Sbjct: 260 NEAIGALDGQTLEGRAIRVNVAEERPRRSF 289
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum
crystallinum]
Length = 306
Score = 335 bits (857), Expect = 1e-089
Identities = 184/311 (59%), Positives = 225/311 (72%), Gaps = 16/311 (5%)
Frame = +1
Query: 31 MASSIVTSSLRPLAMSESSSSTTFSHPSFSTFHSSKTRCSLLTKRTNLPLSFSLKSK-TH 207
M+S+ L+ L++S + +T+ PS F+ S+ K T L LS S+ S +
Sbjct: 1 MSSATANPCLKTLSLSHNCFTTSLYTPSI--FNPKSHNFSIPLKPTKLNLSISVFSPFSP 58
Query: 208 LKKSPFVTLVAETSDWSGEEDGSSSSVAVEESDPEEATFSE---GEGDVSEGGGGGGD-- 372
K S V+ VA+TSDW E SS+++ +E AT+ G+ + G G D
Sbjct: 59 QKSSTIVSYVAQTSDWDQE---SSNALLDDEQQVGGATWGTQNFGDSEPQVSGVGNEDEE 115
Query: 373 -----FQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 537
F EPPEEAKLFVGNL YDVDS+ LA +F+ AG VEIAEVIYNRETD+SRGFGFVT
Sbjct: 116 ESEQGFSEPPEEAKLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETDRSRGFGFVT 175
Query: 538 MSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDS 717
MSTVEEAE AVE N +D+NGRLLTVNKAAP+GSRPER PR +EP+ RVYVGNLPWDVD+
Sbjct: 176 MSTVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPERPPREFEPSCRVYVGNLPWDVDN 235
Query: 718 GRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRV 897
RLEQVFSEHGKV+ A+VV DRETGRSRGFGFV+M++E+E+NDA+AALDGQ ++GRAIRV
Sbjct: 236 ARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAALDGQTLDGRAIRV 295
Query: 898 NVAEERPRRGF 930
NVAEERPRR F
Sbjct: 296 NVAEERPRRAF 306
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 332 bits (851), Expect = 6e-089
Identities = 169/229 (73%), Positives = 189/229 (82%), Gaps = 4/229 (1%)
Frame = +1
Query: 238 AETSDWSGEEDGSSSSVAVEESDPEEATFSEGEGDVSEGGGGGGDFQEPPEEAKLFVGNL 417
A SDW GE +G ES E+ S G+G V GG + PPEEAKLFVGNL
Sbjct: 73 ATLSDWEGEGEGEGEEQT--ESGAEDGEESGGDGFVE--GGEEDSYPLPPEEAKLFVGNL 128
Query: 418 AYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLN 597
YDVD QALA LF+QAGTVE+AEVIYNRETDQSRGFGFVTMSTVEEAE AVE FNRYD+N
Sbjct: 129 PYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFNRYDIN 188
Query: 598 GRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRLEQVFSEHGKVVEAKVVY 777
GRLLTVNKAAP+G+R +R PR +EPAFR+YVGNLPW VD RLEQVFSEHGKVVEA+VVY
Sbjct: 189 GRLLTVNKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVY 248
Query: 778 DRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVAEERPRR 924
DRETGRSRGFGFVTMS +TEL+DA+AALDGQ+++GRAIRVNVAE+RPRR
Sbjct: 249 DRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAEDRPRR 297
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 330 bits (846), Expect = 2e-088
Identities = 170/254 (66%), Positives = 208/254 (81%), Gaps = 8/254 (3%)
Frame = +1
Query: 181 SFSLKSKTHLKKSPFVTLVAETSDWSGEEDGSSSSVAVE-----ESDPEEATFSEGEGDV 345
+ S+K KTHL S + VA+TSDW+ +E+ +++++ + E++ E+A SE E
Sbjct: 41 TLSVKPKTHL--SLTIPFVAQTSDWAQQEEENNTTITLTEVSDWEAEGEDAAASETEAVR 98
Query: 346 SEGGGGGGD-FQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRG 522
EG G + F EPPEEAK++VGNL YDV S+ LAMLF+QAGTVEI+EVIYN ETD SRG
Sbjct: 99 GEGERGDEEGFVEPPEEAKIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRG 158
Query: 523 FGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLP 702
FGFVTMSTVEE++ A+E FNRY+L+GRLLTVNKAAP+GSRPER PRV EP++R+YVGNLP
Sbjct: 159 FGFVTMSTVEESDKAIEMFNRYNLDGRLLTVNKAAPRGSRPERPPRVSEPSYRIYVGNLP 218
Query: 703 WDVDSGRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEG 882
W VDSGRLE+VFSEHGKVV A+VV D ETGRSRGFGFVTMS+E+ELNDA+AALDGQ ++G
Sbjct: 219 WGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDGQELDG 278
Query: 883 RAIRVNVAEERPRR 924
RAIRVNVA ERPRR
Sbjct: 279 RAIRVNVAAERPRR 292
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 328 bits (839), Expect = 2e-087
Identities = 187/315 (59%), Positives = 220/315 (69%), Gaps = 20/315 (6%)
Frame = +1
Query: 19 LSLTMASSIVTSSLRPLAMSESSSSTTFSHPSFSTFH-SSKTRCSLLTKRTNLPLSFSLK 195
L T AS SL P++ S ++SH S S F KT SL ++ +
Sbjct: 22 LPSTFASKPPLKSL-PISQRPSKLQLSYSH-SLSPFSLKPKTHLSLTIPFVTQTSDWAQQ 79
Query: 196 SKTHLKKSPFVTLVAE------TSDWSGEEDGSSSSVAVE-ESDPEEATFSE---GEGDV 345
+ + + +TL S+W EE E E++ E+A +E GEG+
Sbjct: 80 GE---EDNTTITLTESEQEEQGESNWVNEESNDFEGKVPEWEAEGEDAAATEAIRGEGES 136
Query: 346 SEGGGGGGDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGF 525
+ G F EPPEEAK+FVGNL YDVDS+ LAMLFEQAGTVEIAEVIYNRETD SRGF
Sbjct: 137 GDEEG----FVEPPEEAKIFVGNLPYDVDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGF 192
Query: 526 GFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPW 705
GFVTMSTVEE+E AVE +RYDL+GR LTVNKAAP+GSRPER PRV EP +R+YVGNLPW
Sbjct: 193 GFVTMSTVEESEKAVEMLHRYDLDGRFLTVNKAAPRGSRPERPPRVSEPGYRIYVGNLPW 252
Query: 706 DVDSGRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGR 885
DVDSGRLEQ+FSEHGKVV A+VV+DRET RSRGFGFVTMS E+ELNDA+AALDGQN++GR
Sbjct: 253 DVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTESELNDAIAALDGQNLDGR 312
Query: 886 AIRVNVAEERPRRGF 930
IRVNVAEERPRR F
Sbjct: 313 PIRVNVAEERPRRTF 327
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 324 bits (830), Expect = 2e-086
Identities = 157/200 (78%), Positives = 176/200 (88%)
Frame = +1
Query: 328 EGEGDVSEGGGGGGDFQEPPEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRET 507
E E D E G + EPPEEAKLFVGNL YD+DS+ LA LF++AG VEIAEVIYNRET
Sbjct: 71 EEEKDGEESEGSEDTYSEPPEEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRET 130
Query: 508 DQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVY 687
DQSRGFGF+TMSTVEEAE AVE FNRYDLNGR LTVNKAAP+GSRPER P+ +EP+FR+Y
Sbjct: 131 DQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIY 190
Query: 688 VGNLPWDVDSGRLEQVFSEHGKVVEAKVVYDRETGRSRGFGFVTMSNETELNDAVAALDG 867
VGNLPW VD RLEQVFSEHGKVV+A+VVYDR+T RSRGFGFVTMS+ETELNDA+AALDG
Sbjct: 191 VGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDG 250
Query: 868 QNMEGRAIRVNVAEERPRRG 927
Q+++GRAIRVNVAEERPRRG
Sbjct: 251 QSLDGRAIRVNVAEERPRRG 270
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis
thaliana]
Length = 289
Score = 322 bits (824), Expect = 9e-086
Identities = 164/219 (74%), Positives = 185/219 (84%), Gaps = 2/219 (0%)
Frame = +1
Query: 274 SSSSVAVEESDPEEATFSEGEGDVSEG--GGGGGDFQEPPEEAKLFVGNLAYDVDSQALA 447
S +S EE + E+ + V E G F EPPEEAKLFVGNL YDVDSQALA
Sbjct: 71 SQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALA 130
Query: 448 MLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAA 627
MLFEQAGTVEI+EVIYNR+TDQSRGFGFVTMSTVEEAE AVEKFN +++NGR LTVN+AA
Sbjct: 131 MLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAA 190
Query: 628 PKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRLEQVFSEHGKVVEAKVVYDRETGRSRGF 807
P+GSRPERQPRVY+ AFR+YVGNLPWDVDSGRLE++FSEHGKVV+A+VV DRETGRSRGF
Sbjct: 191 PRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGF 250
Query: 808 GFVTMSNETELNDAVAALDGQNMEGRAIRVNVAEERPRR 924
GFV MSNE E+N A+AALDGQN+EGRAI+VNVAEER RR
Sbjct: 251 GFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
>gi|225456840|ref|XP_002278832.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 327
Score = 321 bits (821), Expect = 2e-085
Identities = 172/293 (58%), Positives = 209/293 (71%), Gaps = 14/293 (4%)
Frame = +1
Query: 61 RPLAMSESSSSTTFSHPSFSTFHSSKTRCSLLTKRTNLPLSFSLKSKTHLKKSPFVTLVA 240
+P+ + S S ++ PS F SKT S + ++F ++ ++ T++
Sbjct: 41 KPIKLLLSCSQSSLFSPSL--FLKSKTLSSSV-------VTFVAQTSDWAQQEEDNTVII 91
Query: 241 ETSD-----WSGEEDGSSSSVAVEESDPEEATFSEGEGDVSEGGGGGGDFQEPPEEAKLF 405
E W EE + A + E +E D G + EPPEEAK+F
Sbjct: 92 EEEQEEKVTWENEEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDSYSEPPEEAKVF 151
Query: 406 VGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNR 585
VGNL YDVDS+ LA LFEQAG VEIAEVIYNRETD+SRGFGFV+MSTVEEAE AV+ F+R
Sbjct: 152 VGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHR 211
Query: 586 YDLNGRLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRLEQVFSEHGKVVEA 765
Y+L+GRLLTVNKAAP+GS+PER PRV+EPAFR+YVGNLPWDVDS RLEQVFSEHGKVVEA
Sbjct: 212 YELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEA 271
Query: 766 KVVYDRETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVAEERPRR 924
+VV+DRETGRSRGFGFVTMS++TEL DA+AA DGQ ++GR IRVNVAEERPRR
Sbjct: 272 RVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRR 324
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis
vinifera]
Length = 1122
Score = 320 bits (818), Expect = 4e-085
Identities = 160/228 (70%), Positives = 183/228 (80%)
Frame = +1
Query: 241 ETSDWSGEEDGSSSSVAVEESDPEEATFSEGEGDVSEGGGGGGDFQEPPEEAKLFVGNLA 420
E W EE + A + E +E D G + EPPEEAK+FVGNL
Sbjct: 892 EKVTWENEEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDSYSEPPEEAKVFVGNLP 951
Query: 421 YDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNG 600
YDVDS+ LA LFEQAG VEIAEVIYNRETD+SRGFGFV+MSTVEEAE AV+ F+RY+L+G
Sbjct: 952 YDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDG 1011
Query: 601 RLLTVNKAAPKGSRPERQPRVYEPAFRVYVGNLPWDVDSGRLEQVFSEHGKVVEAKVVYD 780
RLLTVNKAAP+GS+PER PRV+EPAFR+YVGNLPWDVDS RLEQVFSEHGKVVEA+VV+D
Sbjct: 1012 RLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFD 1071
Query: 781 RETGRSRGFGFVTMSNETELNDAVAALDGQNMEGRAIRVNVAEERPRR 924
RETGRSRGFGFVTMS++TEL DA+AA DGQ ++GR IRVNVAEERPRR
Sbjct: 1072 RETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRR 1119
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,368,797,218,133
Number of Sequences: 15229318
Number of Extensions: 2368797218133
Number of Successful Extensions: 592660124
Number of sequences better than 0.0: 0
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