BLASTX 7.6.2
Query= UN20262 /QuerySize=629
(628 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G45030.1 | Symbols: | 40S ribosomal protein S... 228 3e-060
TAIR9_protein||AT5G62300.1 | Symbols: | 40S ribosomal protein S... 228 3e-060
TAIR9_protein||AT5G62300.2 | Symbols: | 40S ribosomal protein S... 228 3e-060
TAIR9_protein||AT3G47370.2 | Symbols: | 40S ribosomal protein S... 222 2e-058
TAIR9_protein||AT3G47370.1 | Symbols: | 40S ribosomal protein S... 222 2e-058
TAIR9_protein||AT3G47370.3 | Symbols: | 40S ribosomal protein S... 222 2e-058
TAIR9_protein||AT3G13120.1 | Symbols: | 30S ribosomal protein S... 50 1e-006
>TAIR9_protein||AT3G45030.1 | Symbols: | 40S ribosomal protein S20 (RPS20A) |
chr3:16471606-16472312 REVERSE
Length = 125
Score = 228 bits (579), Expect = 3e-060
Identities = 117/125 (93%), Gaps = 1/125 (0%)
Frame = -1
Query: 559 AMAYAPPMKQGKAGFEETQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 380
A AY PMK GKAG EE EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR
Sbjct: 2 ATAY-QPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 60
Query: 379 MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT 200
MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT
Sbjct: 61 MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT 120
Query: 199 IADS* 185
IADS*
Sbjct: 121 IADS* 125
>TAIR9_protein||AT5G62300.1 | Symbols: | 40S ribosomal protein S20 (RPS20C) |
chr5:25021388-25022235 REVERSE
Length = 125
Score = 228 bits (579), Expect = 3e-060
Identities = 117/125 (93%), Gaps = 1/125 (0%)
Frame = -1
Query: 559 AMAYAPPMKQGKAGFEETQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 380
A AY PMK GKAG EE EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR
Sbjct: 2 ATAY-QPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 60
Query: 379 MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT 200
MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT
Sbjct: 61 MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT 120
Query: 199 IADS* 185
IADS*
Sbjct: 121 IADS* 125
>TAIR9_protein||AT5G62300.2 | Symbols: | 40S ribosomal protein S20 (RPS20C) |
chr5:25021388-25022235 REVERSE
Length = 125
Score = 228 bits (579), Expect = 3e-060
Identities = 117/125 (93%), Gaps = 1/125 (0%)
Frame = -1
Query: 559 AMAYAPPMKQGKAGFEETQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 380
A AY PMK GKAG EE EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR
Sbjct: 2 ATAY-QPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 60
Query: 379 MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT 200
MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT
Sbjct: 61 MPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVT 120
Query: 199 IADS* 185
IADS*
Sbjct: 121 IADS* 125
>TAIR9_protein||AT3G47370.2 | Symbols: | 40S ribosomal protein S20 (RPS20B) |
chr3:17453671-17454437 REVERSE
Length = 123
Score = 222 bits (564), Expect = 2e-058
Identities = 112/119 (94%)
Frame = -1
Query: 541 PMKQGKAGFEETQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 362
PMK KAG E EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL
Sbjct: 5 PMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
Query: 361 KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS* 185
KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS*
Sbjct: 65 KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS* 123
>TAIR9_protein||AT3G47370.1 | Symbols: | 40S ribosomal protein S20 (RPS20B) |
chr3:17453671-17454437 REVERSE
Length = 123
Score = 222 bits (564), Expect = 2e-058
Identities = 112/119 (94%)
Frame = -1
Query: 541 PMKQGKAGFEETQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 362
PMK KAG E EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL
Sbjct: 5 PMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
Query: 361 KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS* 185
KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS*
Sbjct: 65 KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS* 123
>TAIR9_protein||AT3G47370.3 | Symbols: | 40S ribosomal protein S20 (RPS20B) |
chr3:17453671-17454437 REVERSE
Length = 123
Score = 222 bits (564), Expect = 2e-058
Identities = 112/119 (94%)
Frame = -1
Query: 541 PMKQGKAGFEETQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 362
PMK KAG E EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL
Sbjct: 5 PMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL 64
Query: 361 KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS* 185
KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS*
Sbjct: 65 KITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS* 123
>TAIR9_protein||AT3G13120.1 | Symbols: | 30S ribosomal protein S10,
chloroplast, putative | chr3:4220310-4221526 REVERSE
Length = 192
Score = 50 bits (117), Expect = 1e-006
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = -1
Query: 490 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWD 311
KIRI L S V +E C ++ A++ + GPV +PTK K+P +
Sbjct: 94 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 152
Query: 310 RFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 197
FE+R H+R+ID L+ + + + + + GV+VEV +
Sbjct: 153 HFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,552,300,124
Number of Sequences: 33410
Number of Extensions: 10552300124
Number of Successful Extensions: 359139626
Number of sequences better than 0.0: 0
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