BLASTX 7.6.2
Query= UN20303 /QuerySize=983
(982 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xe... 147 1e-034
sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Ho... 146 2e-034
sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus ... 146 3e-034
sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bo... 146 4e-034
sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Dr... 139 4e-032
sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mu... 139 5e-032
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=M... 138 8e-032
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=H... 138 1e-031
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=D... 121 1e-026
sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 O... 108 9e-023
sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein... 83 3e-015
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis
GN=snrpa PE=2 SV=1
Length = 282
Score = 147 bits (370), Expect = 1e-034
Identities = 75/140 (53%), Positives = 97/140 (69%), Gaps = 1/140 (0%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PN TIYINNLNEK+K DELKKSL A+FSQ+G+I+++L + LK +GQA+V+F SA+N
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATN 67
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 445
A+ M GFPFYDKPMRIQ++KT SD+IAK GTFV R+ RKR E++ K + Q N
Sbjct: 68 ALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERD-RKRQEKRKVKVPEVQGVKNAM 126
Query: 446 MPIPPYPGVYGSAPPLSQVP 505
PGV G + +P
Sbjct: 127 PGAALLPGVPGQMAAMQDMP 146
Score = 75 bits (182), Expect = 8e-013
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 549 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTA 728
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ A
Sbjct: 200 PISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 259
Query: 729 AMHGLEGFTIHQT-PMHITYAKK 794
A L+GF I Q+ M I++AKK
Sbjct: 260 ARESLQGFKITQSNSMKISFAKK 282
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens
GN=SNRPA PE=1 SV=3
Length = 282
Score = 146 bits (368), Expect = 2e-034
Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PN TIYINNLNEK+K DELKKSL A+FSQ+G+I+++L ++LK +GQA+V+F SA+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFV----PREKRKRHEEKGGKKKKEQHH 433
A+ M GFPFYDKPMRIQ+AKT SD+IAK GTFV REKRK ++ KK
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQG 127
Query: 434 DNTRMPIPPYPGVYGSAPPLSQVP 505
+ G PP++Q P
Sbjct: 128 GGATPVVGAVQGPVPGMPPMTQAP 151
Score = 74 bits (180), Expect = 1e-012
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 549 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTA 728
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ A
Sbjct: 200 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 259
Query: 729 AMHGLEGFTIHQ-TPMHITYAKK 794
A L+GF I Q M I++AKK
Sbjct: 260 ARDALQGFKITQNNAMKISFAKK 282
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA
PE=2 SV=1
Length = 282
Score = 146 bits (367), Expect = 3e-034
Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PN TIYINNLNEK+K DELKKSL A+FSQ+G+I+++L ++LK +GQA+V+F SA+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFV----PREKRKRHEEKGGKKKKEQHH 433
A+ M GFPFYDKPMRIQ+AKT SD+IAK GTFV REKRK ++ KK
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKAVQG 127
Query: 434 DNTRMPIPPYPGVYGSAPPLSQVP 505
+ G PP++Q P
Sbjct: 128 GAAAPVVGAVQGPVPGMPPMTQTP 151
Score = 74 bits (180), Expect = 1e-012
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 549 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTA 728
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ A
Sbjct: 200 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 259
Query: 729 AMHGLEGFTIHQ-TPMHITYAKK 794
A L+GF I Q M I++AKK
Sbjct: 260 ARDALQGFKITQNNAMKISFAKK 282
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus
GN=SNRPA PE=2 SV=1
Length = 282
Score = 146 bits (366), Expect = 4e-034
Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PN TIYINNLNEK+K DELKKSL A+FSQ+G+I+++L ++LK +GQA+V+F SA+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFV----PREKRKRHEEKGGKKKKEQHH 433
A+ M GFPFYDKPMRIQ+AKT SD+IAK GTFV REKRK ++ KK
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 434 DNTRMPIPPYPGVYGSAPPLSQVP 505
+ G PP++Q P
Sbjct: 128 GAAAPVVGTVQGPVPGMPPMTQAP 151
Score = 74 bits (180), Expect = 1e-012
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 549 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTA 728
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ A
Sbjct: 200 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 259
Query: 729 AMHGLEGFTIHQ-TPMHITYAKK 794
A L+GF I Q M I++AKK
Sbjct: 260 ARDALQGFKITQNNAMKISFAKK 282
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila
melanogaster GN=snf PE=1 SV=1
Length = 216
Score = 139 bits (349), Expect = 4e-032
Identities = 69/126 (54%), Positives = 93/126 (73%), Gaps = 7/126 (5%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PNQTIYINNLNEK+K +ELKKSL A+FSQ+G+I++++A KTLK +GQA+V+F SASN
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKR-------HEEKGGKKKKE 424
A+ M GFPFYDKPM+I ++K+ SD++AK GTF R K+ + +EK KKKK
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVKPPKPAPGTDEKKDKKKKP 124
Query: 425 QHHDNT 442
+N+
Sbjct: 125 SSAENS 130
Score = 76 bits (186), Expect = 3e-013
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +3
Query: 564 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 743
PPN ILF+ +LP +T L LF + GFKEVR+V + IAFVEF E+QS AA L
Sbjct: 139 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEAL 198
Query: 744 EGFTIHQT-PMHITYAKK 794
+GF I T M IT+AKK
Sbjct: 199 QGFKITPTHAMKITFAKK 216
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus
GN=Snrpa PE=2 SV=3
Length = 287
Score = 139 bits (348), Expect = 5e-032
Identities = 76/146 (52%), Positives = 99/146 (67%), Gaps = 11/146 (7%)
Frame = +2
Query: 89 NQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASNA 268
N TIYINNLNEK+K DELKKSL A+FSQ+G+I+++L + +K +GQA+V+F SA+NA
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 269 ISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFV----PREKRK-RHEEKGGKKKKEQHH 433
+ M GFPFYDKPMRIQ+AKT SD+IAK GT+V REKRK + +E KK Q
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGG 134
Query: 434 DNTRM--PIPPYPGVYGSAPPLSQVP 505
+ + P PG+ PP+ Q P
Sbjct: 135 AAAPVVGAVQPVPGM----PPMPQAP 156
Score = 74 bits (180), Expect = 1e-012
Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 549 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTA 728
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF +E+Q+ A
Sbjct: 205 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 264
Query: 729 AMHGLEGFTIHQ-TPMHITYAKK 794
A L+GF I Q M I++AKK
Sbjct: 265 ARDALQGFKITQNNAMKISFAKK 287
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus
GN=Snrpb2 PE=2 SV=1
Length = 225
Score = 138 bits (346), Expect = 8e-032
Identities = 71/146 (48%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PN TIYINN+N+K+K +ELK+SL A+FSQ+G +V+++A KT+K +GQA+V+F S++N
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 445
A+ ++ GFPFY KPMRIQ+AKT SD+I+K GTF +EK+K E+K K ++ +
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTMEQAAAAANK 122
Query: 446 MP---IPPYPGVYGSAPPLSQVP-YP 511
P P G+A P QVP YP
Sbjct: 123 KPGQGTPNAANTQGTAAPNPQVPDYP 148
Score = 74 bits (180), Expect = 1e-012
Identities = 44/92 (47%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Frame = +3
Query: 531 GVKSNLPEAP-APPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFA 707
G + P+ P PPN ILF+ +LP +T L LF + GFKEVR+V + IAFVEF
Sbjct: 136 GTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 195
Query: 708 DEMQSTAAMHGLEGFTIHQTPMH---ITYAKK 794
++ Q+ AA L+GF I TP H ITYAKK
Sbjct: 196 NDGQAGAARDALQGFKI--TPSHAMKITYAKK 225
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens
GN=SNRPB2 PE=1 SV=1
Length = 225
Score = 138 bits (345), Expect = 1e-031
Identities = 70/146 (47%), Positives = 101/146 (69%), Gaps = 6/146 (4%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PN TIYINN+N+K+K +ELK+SL A+FSQ+G +V+++A KT+K +GQA+V+F S++N
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 445
A+ ++ GFPFY KPMRIQ+AKT SD+I+K GTF +EK+K E+K K ++ +
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTVEQTATTTNK 122
Query: 446 MP---IPPYPGVYGSAPPLSQVP-YP 511
P P G++ P QVP YP
Sbjct: 123 KPGQGTPNSANTQGNSTPNPQVPDYP 148
Score = 74 bits (179), Expect = 2e-012
Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Frame = +3
Query: 549 PEAP-APPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQST 725
P+ P PPN ILF+ +LP +T L LF + GFKEVR+V + IAFVEF ++ Q+
Sbjct: 142 PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAG 201
Query: 726 AAMHGLEGFTIHQTPMH---ITYAKK 794
AA L+GF I TP H ITYAKK
Sbjct: 202 AARDALQGFKI--TPSHAMKITYAKK 225
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium
discoideum GN=snrpb2 PE=3 SV=1
Length = 241
Score = 121 bits (301), Expect = 1e-026
Identities = 53/113 (46%), Positives = 84/113 (74%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PNQT+Y+NNL EK+ +L + L +FS+YG I+E++ K+LK +GQA++VF + SASN
Sbjct: 10 PNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDITSASN 69
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKE 424
A+ +MNGF F D+PM+IQ+ K+KSD ++K DGT++ +++ + +K G KK+
Sbjct: 70 ALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKKGSNKKQ 122
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102
OS=Schizosaccharomyces pombe GN=usp102 PE=1 SV=1
Length = 249
Score = 108 bits (268), Expect = 9e-023
Identities = 51/134 (38%), Positives = 86/134 (64%), Gaps = 3/134 (2%)
Frame = +2
Query: 17 MEMMMMQEQEEAAANKAGSEVSSPNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVL 196
M+ QE + ++ +P++T+YI N+ EK++L LK+ L +F YGK+++V
Sbjct: 1 MDPQTNSHQEVQQPSPKETDSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQ 60
Query: 197 AFKTLKHKGQAWVVFDNPESASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPR 376
A KTL+ +GQA+VVFDN E+AS A+ + G+P Y KPM IQ++K+KSD+I + + P
Sbjct: 61 ARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKSKSDIIVQRES---PE 117
Query: 377 EKRKRHEEKGGKKK 418
E R +++ +++
Sbjct: 118 EIETRKKDRKNRRE 131
Score = 72 bits (176), Expect = 4e-012
Identities = 33/91 (36%), Positives = 56/91 (61%)
Frame = +3
Query: 522 VGGGVKSNLPEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVE 701
VG KS + E PPN +L +Q++P + + L ++F + GF+EVRMV + GIAFVE
Sbjct: 157 VGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVE 216
Query: 702 FADEMQSTAAMHGLEGFTIHQTPMHITYAKK 794
+ + ++T A +G G ++ + +T+A+K
Sbjct: 217 YDSDREATVAKNGTTGMSLSGNQIKVTFARK 247
>sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B''
OS=Schizosaccharomyces pombe GN=SPBC8D2.09c PE=2 SV=1
Length = 111
Score = 83 bits (203), Expect = 3e-015
Identities = 37/86 (43%), Positives = 62/86 (72%)
Frame = +2
Query: 95 TIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASNAIS 274
T+Y+NNLN+K+ ++L+ +L +FS YG +V+++A KT K +GQA VVF +P +A+ A+
Sbjct: 5 TLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMK 64
Query: 275 KMNGFPFYDKPMRIQFAKTKSDVIAK 352
+ F F+ K M+IQ+A +KS +I +
Sbjct: 65 ALKNFIFFGKEMKIQYAHSKSKIIER 90
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,450,105,564
Number of Sequences: 518415
Number of Extensions: 83450105564
Number of Successful Extensions: 573192055
Number of sequences better than 0.0: 0
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