BLASTX 7.6.2
Query= UN20303 /QuerySize=983
(982 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PR... 265 3e-071
TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nu... 148 9e-036
TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucle... 147 1e-035
TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucle... 147 1e-035
TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucle... 109 3e-024
>TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA
binding / nucleic acid binding / nucleotide binding |
chr2:19517229-19518686 FORWARD
Length = 251
Score = 265 bits (677), Expect = 3e-071
Identities = 131/162 (80%), Positives = 143/162 (88%), Gaps = 4/162 (2%)
Frame = +2
Query: 44 EEAAANKAGSEVSSPNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKG 223
E AN+ G SPNQTIYINNLNEKVKLDELKKSLNAVFSQ+GKI+E+LAFKT KHKG
Sbjct: 2 EMQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKG 61
Query: 224 QAWVVFDNPESASNAISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEK 403
QAWVVFDN ESAS AI+KMN FPFYDK MRIQ+AKTKSDV+AKADGTFVPREKRKRHEEK
Sbjct: 62 QAWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEK 121
Query: 404 -GGKKKKEQHHDNTRMPIP---PYPGVYGSAPPLSQVPYPGG 517
GGKKKK+QHHD+T+M +P YPGVYG+APPLSQVPYPGG
Sbjct: 122 GGGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGG 163
Score = 140 bits (352), Expect = 1e-033
Identities = 68/90 (75%), Positives = 74/90 (82%)
Frame = +3
Query: 528 GGVKSNLPEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFA 707
GG+K N+PEAPAPPNNILFVQ+LPH+TTP LQ LF Y GFKEVRM+ AKPGIAFVEFA
Sbjct: 162 GGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFA 221
Query: 708 DEMQSTAAMHGLEGFTIHQTPMHITYAKK* 797
DEMQST AM GL+GF I Q M ITYAKK*
Sbjct: 222 DEMQSTVAMQGLQGFKIQQNQMLITYAKK* 251
>TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nuclear
ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide
binding | chr2:12905557-12907434 REVERSE
Length = 233
Score = 148 bits (371), Expect = 9e-036
Identities = 65/119 (54%), Positives = 94/119 (78%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PNQ+IYI NLNE++K +ELK+SL +FSQ+G+I++V+A KT K +GQAWV F +A +
Sbjct: 8 PNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGH 67
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNT 442
A+ +M FPFYDKPMR+Q+AK KSD +AKA+GTFVP++K+++ EEK +K+++ NT
Sbjct: 68 AVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNT 126
Score = 99 bits (244), Expect = 5e-021
Identities = 48/79 (60%), Positives = 61/79 (77%), Gaps = 1/79 (1%)
Frame = +3
Query: 564 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 743
PPNNILF+Q+LPH+TT LQ LF Y GFKE+RM+ AKPGIAFVE+ D++Q++ AM L
Sbjct: 155 PPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPL 214
Query: 744 EGFTI-HQTPMHITYAKK* 797
+GF I Q PM I++AKK*
Sbjct: 215 QGFKITPQNPMVISFAKK* 233
>TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 230
Score = 147 bits (370), Expect = 1e-035
Identities = 68/125 (54%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PNQ+IYI ++NEK+K +ELK+SL +FSQ+G++++V+A KT K +GQAWVVF +ASN
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASN 67
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 445
A+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H + T+
Sbjct: 68 AVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEETQ 124
Query: 446 MPIPP 460
P P
Sbjct: 125 QPSMP 129
Score = 92 bits (228), Expect = 3e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +3
Query: 564 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 743
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 211
Query: 744 EGFTI-HQTPMHITYAKK* 797
+GF I Q PM +++AKK*
Sbjct: 212 QGFKITPQNPMVVSFAKK* 230
>TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 229
Score = 147 bits (370), Expect = 1e-035
Identities = 68/125 (54%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Frame = +2
Query: 86 PNQTIYINNLNEKVKLDELKKSLNAVFSQYGKIVEVLAFKTLKHKGQAWVVFDNPESASN 265
PNQ+IYI ++NEK+K +ELK+SL +FSQ+G++++V+A KT K +GQAWVVF +ASN
Sbjct: 8 PNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASN 67
Query: 266 AISKMNGFPFYDKPMRIQFAKTKSDVIAKADGTFVPREKRKRHEEKGGKKKKEQHHDNTR 445
A+ +M FPFYDKPMRIQ+AK+KSD + KA+G+FVP+EK+ + EEK +K+ H + T+
Sbjct: 68 AVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKR---HAEETQ 124
Query: 446 MPIPP 460
P P
Sbjct: 125 QPSMP 129
Score = 92 bits (228), Expect = 3e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +3
Query: 564 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 743
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 151 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 210
Query: 744 EGFTI-HQTPMHITYAKK* 797
+GF I Q PM +++AKK*
Sbjct: 211 QGFKITPQNPMVVSFAKK* 229
>TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135982-2137533
FORWARD
Length = 201
Score = 109 bits (272), Expect = 3e-024
Identities = 50/97 (51%), Positives = 73/97 (75%), Gaps = 3/97 (3%)
Frame = +2
Query: 170 QYGKIVEVLAFKTLKHKGQAWVVFDNPESASNAISKMNGFPFYDKPMRIQFAKTKSDVIA 349
++G++++V+A KT K +GQAWVVF +ASNA+ +M FPFYDKPMRIQ+AK+KSD +
Sbjct: 7 KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66
Query: 350 KADGTFVPREKRKRHEEKGGKKKKEQHHDNTRMPIPP 460
KA+G+FVP+EK+ + EEK +K+ H + T+ P P
Sbjct: 67 KAEGSFVPKEKKMKQEEKVERKR---HAEETQQPSMP 100
Score = 92 bits (228), Expect = 3e-019
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 1/79 (1%)
Frame = +3
Query: 564 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFADEMQSTAAMHGL 743
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ D++QS+ AM L
Sbjct: 123 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 182
Query: 744 EGFTI-HQTPMHITYAKK* 797
+GF I Q PM +++AKK*
Sbjct: 183 QGFKITPQNPMVVSFAKK* 201
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,595,443,243
Number of Sequences: 33410
Number of Extensions: 10595443243
Number of Successful Extensions: 359217299
Number of sequences better than 0.0: 0
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