BLASTX 7.6.2
Query= UN20886 /QuerySize=1611
(1610 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R ... 176 4e-043
sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q ... 174 1e-042
sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q ... 174 2e-042
sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS... 174 2e-042
sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sa... 160 4e-038
sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca ... 160 4e-038
sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus mus... 160 4e-038
sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio r... 159 6e-038
sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapi... 157 3e-037
sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abe... 156 5e-037
sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus... 154 2e-036
sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris... 152 1e-035
sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=... 149 7e-035
sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic ... 109 8e-023
sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Sa... 62 8e-009
sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabi... 61 2e-008
sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sa... 61 2e-008
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=... 61 2e-008
sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitocho... 59 7e-008
sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=... 59 1e-007
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens
GN=HNRNPR PE=1 SV=1
Length = 633
Score = 176 bits (446), Expect = 4e-043
Identities = 94/265 (35%), Positives = 159/265 (60%), Gaps = 8/265 (3%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
P G+EVF+G +PRD+ E++L L E G I+++RLM D SG+++GYAF+ F K+ AQ
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
+A++ S + + GK + +S NRLF+G+IPK+ T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
P + +NRGF F+ Y ++ A +R++++ K+ GN TV WADP P+ A+
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE-VMAK 339
Query: 833 VKALYVKNIPENTSTEQLKELFQRHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAVKD 1012
VK L+V+N+ + E L++ F G + +V +D+ FVH+ +R +A++A+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERVKK------LKDYAFVHFEDRGAAVKAMDE 393
Query: 1013 SERYEINGQELEVVLAKPQAERKHE 1087
EI G+E+E+VLAKP +++ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 174 bits (441), Expect = 1e-042
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 8/265 (3%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
P G+E+F+G +PRD+ E++L L E G I+++RLM D +G ++GYAFV F TK+ AQ
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
+A++ ++ + + GK I +S NRLF+G+IPK T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
P + +NRGF F+ Y ++ A +R++++ K+ GN TV WADP P+ A+
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE-VMAK 336
Query: 833 VKALYVKNIPENTSTEQLKELFQRHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAVKD 1012
VK L+V+N+ + E L++ F + G + +V +D+ F+H+ ER A++A+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKK------LKDYAFIHFDERDGAVKAMEE 390
Query: 1013 SERYEINGQELEVVLAKPQAERKHE 1087
++ G+ +E+V AKP +++ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 174 bits (440), Expect = 2e-042
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 8/265 (3%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
P G+E+F+G +PRD+ E++L L E G I+++RLM D +G ++GYAFV F TK+ AQ
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
+A++ ++ + + GK I +S NRLF+G+IPK T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
P + +NRGF F+ Y ++ A +R++++ K+ GN TV WADP P+ A+
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE-VMAK 336
Query: 833 VKALYVKNIPENTSTEQLKELFQRHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAVKD 1012
VK L+V+N+ + E L++ F + G + +V +D+ F+H+ ER A++A+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERVKK------LKDYAFIHFDERDGAVKAMEE 390
Query: 1013 SERYEINGQELEVVLAKPQAERKHE 1087
++ G+ +E+V AKP +++ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus
norvegicus GN=Syncrip PE=2 SV=1
Length = 533
Score = 174 bits (440), Expect = 2e-042
Identities = 90/265 (33%), Positives = 159/265 (60%), Gaps = 8/265 (3%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
P G+E+F+G +PRD+ E++L L E G I+++RLM D +G ++GYAFV F TK+ AQ
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
+A++ ++ + + GK I +S NRLF+G+IPK T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
P + +NRGF F+ Y ++ A +R++++ K+ GN TV WADP P+ A+
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPE-VMAK 246
Query: 833 VKALYVKNIPENTSTEQLKELFQRHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAVKD 1012
VK L+V+N+ + E L++ F + G + +V +D+ F+H+ ER A++A+++
Sbjct: 247 VKVLFVRNLANTVTEEILEKSFSQFGKLERVKK------LKDYAFIHFDERDGAVKAMEE 300
Query: 1013 SERYEINGQELEVVLAKPQAERKHE 1087
++ G+ +E+V AKP +++ E
Sbjct: 301 MNGKDLEGENIEIVFAKPPDQKRKE 325
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46
PE=2 SV=1
Length = 533
Score = 160 bits (403), Expect = 4e-038
Identities = 100/260 (38%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
PP G EVF+G +PRD+ E++L + E G I+E RLM + SGE++GYAFV + TK+ AQ
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQ 115
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
AI L++ + + GK I +S RLFIG IPK+ ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
T+ +NRGFAFV Y ++ A +R+K+I +F+L G+ V WADP+ + +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVD-EETMQR 234
Query: 833 VKALYVKNIPENTSTEQLKELFQRH--GGVTKVVTPPGKGGKRDFGFVHYAERSSALRAV 1006
VK LYV+N+ +T+ E +K F + G V +V RD+ FVH+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKK------LRDYAFVHFFNREDAVAAM 288
Query: 1007 KDSERYEINGQELEVVLAKP 1066
I+G +EV LAKP
Sbjct: 289 SVMNGKCIDGASIEVTLAKP 308
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis
GN=RBM46 PE=2 SV=2
Length = 485
Score = 160 bits (403), Expect = 4e-038
Identities = 100/260 (38%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
PP G EVF+G +PRD+ E++L + E G I+E RLM + SGE++GYAFV + TK+ AQ
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQ 115
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
AI L++ + + GK I +S RLFIG IPK+ ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
T+ +NRGFAFV Y ++ A +R+K+I +F+L G+ V WADP+ + +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVD-EETMQR 234
Query: 833 VKALYVKNIPENTSTEQLKELFQRH--GGVTKVVTPPGKGGKRDFGFVHYAERSSALRAV 1006
VK LYV+N+ +T+ E +K F + G V +V RD+ FVH+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKK------LRDYAFVHFFNREDAVAAM 288
Query: 1007 KDSERYEINGQELEVVLAKP 1066
I+G +EV LAKP
Sbjct: 289 SVMNGKCIDGASIEVTLAKP 308
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46
PE=4 SV=1
Length = 533
Score = 160 bits (403), Expect = 4e-038
Identities = 100/260 (38%), Positives = 150/260 (57%), Gaps = 11/260 (4%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
PP G EVF+G +PRD+ E++L + E G I+E RLM + SGE++GYAFV + TK+ AQ
Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQ 115
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
AI L++ + + GK I +S RLFIG IPK+ ++E ++ V GV + +
Sbjct: 116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
T+ +NRGFAFV Y ++ A +R+K+I +F+L G+ V WADP+ + +
Sbjct: 176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVD-EETMQR 234
Query: 833 VKALYVKNIPENTSTEQLKELFQRH--GGVTKVVTPPGKGGKRDFGFVHYAERSSALRAV 1006
VK LYV+N+ +T+ E +K F + G V +V RD+ FVH+ R A+ A+
Sbjct: 235 VKVLYVRNLMISTTEETIKAEFSKFKPGAVERVKK------LRDYAFVHFFHREDAVAAM 288
Query: 1007 KDSERYEINGQELEVVLAKP 1066
I+G +EV LAKP
Sbjct: 289 SVMNGKCIDGASIEVTLAKP 308
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46
PE=2 SV=1
Length = 510
Score = 159 bits (401), Expect = 6e-038
Identities = 96/263 (36%), Positives = 154/263 (58%), Gaps = 11/263 (4%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
PP G EVF+G +PRD+ E++L + E G I+E RLM + SGE++GYAFV + T++ AQ
Sbjct: 41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMME-FSGENRGYAFVMYTTREKAQ 99
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
+AI+ L + + + GK I +S RLFIG+IPKD ++E ++ + V GV + +
Sbjct: 100 RAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYP 159
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
+ +NRGFAFV Y ++ A +R+K+I +F+L G+ V WA+P+ + +
Sbjct: 160 SAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELD-EETMQR 218
Query: 833 VKALYVKNIPENTSTEQLKELFQ--RHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAV 1006
V+ LYV+N+ +T+ E L+ F + G V +V D+ F+H+ R AL A+
Sbjct: 219 VRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKK------LTDYAFIHFYNREDALTAL 272
Query: 1007 KDSERYEINGQELEVVLAKPQAE 1075
+ I+G +EV LAKP ++
Sbjct: 273 ESMNGKVIDGSPIEVTLAKPASK 295
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF
PE=1 SV=1
Length = 594
Score = 157 bits (395), Expect = 3e-037
Identities = 93/260 (35%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
P G E+FIG LPRD+ E++L LCE IG I+E+R+M D +G ++GYAFV F K A+
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAK 110
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
AI++L++ + + G+ + S RLF+G IPK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
+ +NRGFAFV Y ++ A +R+K++ +L G+ V WA+P+ + ++
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSS- 229
Query: 833 VKALYVKNIPENTSTEQLKELFQ--RHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAV 1006
VK LYV+N+ +TS E +++ F + G V +V RD+ FVH++ R A+ A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAM 283
Query: 1007 KDSERYEINGQELEVVLAKP 1066
K ++G +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF
PE=2 SV=1
Length = 587
Score = 156 bits (393), Expect = 5e-037
Identities = 93/260 (35%), Positives = 149/260 (57%), Gaps = 11/260 (4%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
P G E+FIG LPRD+ E++L LCE IG I+E+R+M D +G ++GYAFV F K A+
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLEAK 110
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
AI++L++ + + G+ + S RLF+G IPK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
+ +NRGFAFV Y ++ A +R+K++ +L G+ V WA+P+ + ++
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 833 VKALYVKNIPENTSTEQLKELFQ--RHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAV 1006
VK LYV+N+ +TS E +++ F + G V +V RD+ FVH++ R A+ A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAM 283
Query: 1007 KDSERYEINGQELEVVLAKP 1066
K ++G +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis
GN=rbm46 PE=2 SV=1
Length = 534
Score = 154 bits (388), Expect = 2e-036
Identities = 97/259 (37%), Positives = 148/259 (57%), Gaps = 9/259 (3%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
PP G EVF+G +PRD+ E+ L L G I+E RLM + SGE++GYAFV + K+ A
Sbjct: 57 PPRGCEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEAL 115
Query: 476 KAIEELHSKQF-KGKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
AI L++ + +GK I +S RLFIG+IP++ ++E + ++ V GV + +
Sbjct: 116 LAIRMLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYP 175
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
T+ +NRGFAFV+Y ++ A +R+K+I F+L G+ V WA P+ + +
Sbjct: 176 SATDKTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVD-EETMQK 234
Query: 833 VKALYVKNIPENTSTEQLKELFQRH-GGVTKVVTPPGKGGKRDFGFVHYAERSSALRAVK 1009
VK LYV+N+ +T+ E +K F R+ GV + V RD+ FVH+ R A+ A+
Sbjct: 235 VKVLYVRNLMMSTTEETIKAEFNRYKPGVVERVKK-----IRDYAFVHFFRRDYAIAAMS 289
Query: 1010 DSERYEINGQELEVVLAKP 1066
I+G +EV LAKP
Sbjct: 290 VMNGRLIDGARIEVTLAKP 308
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2
SV=1
Length = 592
Score = 152 bits (382), Expect = 1e-035
Identities = 107/310 (34%), Positives = 162/310 (52%), Gaps = 25/310 (8%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
P G EVF+G +PRDV E++L + E +G I+E+RLM D D G+++GYAFV + K A+
Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
+A+ EL++ + + G+ + S RLFIG IPK +E + I V GV + +
Sbjct: 128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
+ +NRGFAFV Y ++ A +R+K++ +L G+ V WA+P+ +
Sbjct: 188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246
Query: 833 VKALYVKNIPENTSTEQLKELF-QRHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAVK 1009
VK LYV+N+ T+ + +K+ F Q + G + V RD+ FVH+A R A+ A+
Sbjct: 247 VKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKK-----IRDYAFVHFASREDAVLAMN 301
Query: 1010 DSERYEINGQELEVVLAKP------QAERKHEPSFYAYGAAAPTP------SPFALPTFG 1153
E+ G LEV LAKP +K A AAAP P P+ L +G
Sbjct: 302 SLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAAPQPGYVYSCDPYTLAYYG 361
Query: 1154 GFAAPPYGAM 1183
PY A+
Sbjct: 362 ----YPYNAL 367
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1
SV=1
Length = 593
Score = 149 bits (375), Expect = 7e-035
Identities = 99/299 (33%), Positives = 159/299 (53%), Gaps = 12/299 (4%)
Frame = +2
Query: 296 PPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQ 475
P G EVF+G +PRDV E++L + E +G I+E+RLM D D G+++GYAFV + K A+
Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125
Query: 476 KAIEELHSKQFK-GKTIRCSLSETKNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIK 652
+A+ EL++ + + G+ + S RLFIG IPK +E + I V GV + +
Sbjct: 126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185
Query: 653 DPTNSARNRGFAFVLYYNNACADYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQ 832
+ +NRGFAFV Y ++ A +R+K++ +L G+ V WA+P+ +
Sbjct: 186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244
Query: 833 VKALYVKNIPENTSTEQLKELF-QRHGGVTKVVTPPGKGGKRDFGFVHYAERSSALRAVK 1009
VK LYV+N+ T+ + +K+ F Q + G + V RD+ FVH+ R A+ A+
Sbjct: 245 VKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKK-----IRDYAFVHFTSREDAVHAMN 299
Query: 1010 DSERYEINGQELEVVLAKP---QAERKHEPSFYAYGAAAPTPSPFALPTFGGFAAPPYG 1177
+ E+ G LEV LAKP + +++ + GAA P + + + YG
Sbjct: 300 NLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSYVYSCDPYTLAYYG 358
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4
Length = 577
Score = 109 bits (271), Expect = 8e-023
Identities = 85/307 (27%), Positives = 142/307 (46%), Gaps = 26/307 (8%)
Frame = +2
Query: 221 DIDIETAED------EEEEEEREEYSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEPIG 382
DI +TAE ++++++ S S+ + +++G L V E L D+ PIG
Sbjct: 3 DITDKTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIG 62
Query: 383 DIFEVRLMKDRDSGESKGYAFVGFKTKDVAQKAIEELHSKQFKGKTIRCSLSET------ 544
+ +R+ +D + S GYA+V F + +KAIE+L+ KG+ R S+
Sbjct: 63 SVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRK 122
Query: 545 --KNRLFIGNIPKDWTEDEFRKVIEDVGPGVESIELIKDPTNSARNRGFAFVLYYNNACA 718
+FI N+ D G + S ++ D + +++GF FV + A
Sbjct: 123 KGSGNIFIKNLHPDIDNKALYDTFSVFG-DILSSKIATD--ENGKSKGFGFVHFEEEGAA 179
Query: 719 DYSRQKMIDSSFKLEGNAPTVTWADPKSSPETSAAAAQVKA----LYVKNIPENTSTEQL 886
++ ID+ + N + A S E + + KA LYVKNI T+ EQ
Sbjct: 180 ----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQF 235
Query: 887 KELFQRHGGVTKVVTPPGKGGK-RDFGFVHYAERSSALRAVKDSERYEINGQELEVVLAK 1063
+ELF + G + GK + FGFV+Y + A++AV+ E+NG++L V A+
Sbjct: 236 QELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 1064 PQAERKH 1084
+ ER H
Sbjct: 296 KKNERMH 302
>sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces
cerevisiae GN=RNA15 PE=1 SV=1
Length = 296
Score = 62 bits (150), Expect = 8e-009
Identities = 26/84 (30%), Positives = 46/84 (54%)
Frame = +2
Query: 299 PHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQK 478
P V++G +P D EE + DLC +G + +++M D +G SKGYAF+ F+ + +
Sbjct: 15 PPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSAS 74
Query: 479 AIEELHSKQFKGKTIRCSLSETKN 550
A+ L+ Q + ++C S +
Sbjct: 75 AVRNLNGYQLGSRFLKCGYSSNSD 98
>sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=GRP8 PE=1 SV=1
Length = 169
Score = 61 bits (147), Expect = 2e-008
Identities = 26/77 (33%), Positives = 48/77 (62%)
Frame = +2
Query: 317 FIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQKAIEELH 496
F+GGL +EDL+ GD+ + +++ DR+SG S+G+ FV FK + + AIEE++
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 497 SKQFKGKTIRCSLSETK 547
K+ G+ I + ++++
Sbjct: 69 GKELDGRVITVNEAQSR 85
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23
PE=1 SV=1
Length = 439
Score = 61 bits (147), Expect = 2e-008
Identities = 27/71 (38%), Positives = 46/71 (64%)
Frame = +2
Query: 314 VFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQKAIEEL 493
+++G L ++ E+ LR + EP G I + LMKD D+G SKGY F+ F + A++A+E+L
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 494 HSKQFKGKTIR 526
+ + G+ +R
Sbjct: 325 NGFELAGRPMR 335
>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=TPRXL PE=5
SV=2
Length = 258
Score = 61 bits (146), Expect = 2e-008
Identities = 57/148 (38%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Frame = -3
Query: 450 PTKAYPLLSPESLSFINLTSKISPIGSHRSLRSSSPTSLGRPPMKTSEP*GGSERRWEYS 271
P+ + SP S S + +S SP S+ S SSS + +S P S S
Sbjct: 83 PSSSSSTSSPSSSS--SSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 140
Query: 270 SLSSSSSSSSAVSISISILLSSSSASASSLFLPP*PSTSCSSSF*LSSSSSSTCSSSISL 91
S SSSS SSS+ S S S SSSS+S+ S P +S SSS SSSSS+ SSS S
Sbjct: 141 SSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSS 200
Query: 90 ELPSS*STRSSTSGASDIEEARANDISP 7
P S S SS+S S + + SP
Sbjct: 201 PSPRSSSPSSSSSSTSSPSTSSPSSSSP 228
>sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial
OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1
Length = 158
Score = 59 bits (142), Expect = 7e-008
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +2
Query: 278 SHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFK 457
S L SL +++FIGGL + LRD GD+ + +++ DR++G S+G+ FV F
Sbjct: 25 SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84
Query: 458 TKDVAQKAIEELHSKQFKGKTIR 526
+ A AI E+ K+ G+ IR
Sbjct: 85 DEGAATAAISEMDGKELNGRHIR 107
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1
SV=2
Length = 530
Score = 59 bits (140), Expect = 1e-007
Identities = 25/71 (35%), Positives = 46/71 (64%)
Frame = +2
Query: 314 VFIGGLPRDVGEEDLRDLCEPIGDIFEVRLMKDRDSGESKGYAFVGFKTKDVAQKAIEEL 493
+++G L ++ E+ LR + EP G I ++LM D ++G SKGY F+ F + A+KA+E+L
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 494 HSKQFKGKTIR 526
+ + G+ ++
Sbjct: 312 NGFELAGRPMK 322
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,924,390,942
Number of Sequences: 518415
Number of Extensions: 86924390942
Number of Successful Extensions: 587655121
Number of sequences better than 0.0: 0
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