BLASTX 7.6.2
Query= UN21076 /QuerySize=1216
(1215 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 338 2e-090
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 336 5e-090
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 335 1e-089
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 330 3e-088
gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein... 324 2e-086
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 267 3e-069
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 258 2e-066
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 257 5e-066
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 201 3e-049
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 187 4e-045
gi|255639723|gb|ACU20155.1| unknown [Glycine max] 177 4e-042
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 173 9e-041
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 338 bits (865), Expect = 2e-090
Identities = 193/242 (79%), Positives = 203/242 (83%), Gaps = 19/242 (7%)
Frame = +2
Query: 83 MSASASSVSLSSFNPKSLLPLCVSR--SASVLPPSLSFKLHS---LSLFASS----SSPA 235
MSASAS SLS+FNPKS LPLCVSR S SVLPPSLSFKLHS +S+FASS SSPA
Sbjct: 1 MSASAS--SLSAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA 57
Query: 236 QYPSLFVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQ 415
+YPS FVR+VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLAQ
Sbjct: 58 EYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQ 117
Query: 416 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPP 595
LFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGYEFEGRPLRVNAGPP
Sbjct: 118 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
Query: 596 PPKREESFSRGPRSGGYGSER-SGYGSQRSGRSGYGSER-SSYG---SGSGSGSSDRVYV 760
PPKREESFSRGPRSGGYGSER GYGS+R G GYGSER YG SG G G S R
Sbjct: 178 PPKREESFSRGPRSGGYGSERGGGYGSERGG--GYGSERGGGYGSQRSGGGYGGSQRSSY 235
Query: 761 GN 766
G+
Sbjct: 236 GS 237
Score = 203 bits (514), Expect = 8e-050
Identities = 106/129 (82%), Positives = 113/129 (87%), Gaps = 5/129 (3%)
Frame = +2
Query: 632 RSGGYGSER-SGYGSQRSGRSGYGSERSSY----GSGSGSGSSDRVYVGNLSWGVDDMAL 796
R GGYGSER GYGSQRSG GS+RSSY GSGSGSGS +R+YVGNLSWGVDDMAL
Sbjct: 206 RGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 265
Query: 797 ESLFSEQGKVVEARVIYDRDTGRSKGFGFVTLGSPQEVTRAINSLNGADLDGRQIRVSEA 976
E+LF+EQGKVVEARVIYDRD+GRSKGFGFVTL S QEV +AINSLNGADLDGRQIRVSEA
Sbjct: 266 ENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Query: 977 EARPPRRQF 1003
EARPPR QF
Sbjct: 326 EARPPRGQF 334
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 336 bits (861), Expect = 5e-090
Identities = 189/230 (82%), Positives = 198/230 (86%), Gaps = 16/230 (6%)
Frame = +2
Query: 83 MSASASSVSLSSFNPKSLLPLCVSR--SASVLPPSLSFKLHS---LSLFASS----SSPA 235
MSASAS SLS+FNPKS LPLCVSR S SVLPPSLSFKLHS +S+FASS SSPA
Sbjct: 1 MSASAS--SLSAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA 57
Query: 236 QYPSLFVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQ 415
+YPS FVR+VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLAQ
Sbjct: 58 EYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQ 117
Query: 416 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPP 595
LFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGYEFEGRPLRVNAGPP
Sbjct: 118 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
Query: 596 PPKREESFSRGPRSGGYGSER-SGYGSQRSGRSGYGSER-SSYGSGSGSG 739
PPKREESFSRGPRSGGYGSER GYGS+R G GYGSER YGS G G
Sbjct: 178 PPKREESFSRGPRSGGYGSERGGGYGSERGG--GYGSERGGGYGSERGGG 225
Score = 203 bits (514), Expect = 8e-050
Identities = 106/129 (82%), Positives = 113/129 (87%), Gaps = 5/129 (3%)
Frame = +2
Query: 632 RSGGYGSER-SGYGSQRSGRSGYGSERSSY----GSGSGSGSSDRVYVGNLSWGVDDMAL 796
R GGYGSER GYGSQRSG GS+RSSY GSGSGSGS +R+YVGNLSWGVDDMAL
Sbjct: 214 RGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 273
Query: 797 ESLFSEQGKVVEARVIYDRDTGRSKGFGFVTLGSPQEVTRAINSLNGADLDGRQIRVSEA 976
E+LF+EQGKVVEARVIYDRD+GRSKGFGFVTL S QEV +AINSLNGADLDGRQIRVSEA
Sbjct: 274 ENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Query: 977 EARPPRRQF 1003
EARPPR QF
Sbjct: 334 EARPPRGQF 342
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 335 bits (857), Expect = 1e-089
Identities = 189/230 (82%), Positives = 197/230 (85%), Gaps = 16/230 (6%)
Frame = +2
Query: 83 MSASASSVSLSSFNPKSLLPLCVSR--SASVLPPSLSFKLHS---LSLFASS----SSPA 235
MSASAS SLS+FNPKS LPLCVSR S SVLPPSLSFKLHS +SLFASS SSPA
Sbjct: 1 MSASAS--SLSAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHIVSLFASSAVKCSSPA 57
Query: 236 QYPSLFVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQ 415
+YP FVR+VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLAQ
Sbjct: 58 EYPLRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQ 117
Query: 416 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPP 595
LFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGYEFEGRPLRVNAGPP
Sbjct: 118 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177
Query: 596 PPKREESFSRGPRSGGYGSER-SGYGSQRSGRSGYGSER-SSYGSGSGSG 739
PPKREESFSRGPRSGGYGSER GYGS+R G GYGSER YGS G G
Sbjct: 178 PPKREESFSRGPRSGGYGSERGGGYGSERGG--GYGSERGGGYGSERGGG 225
Score = 203 bits (514), Expect = 8e-050
Identities = 107/127 (84%), Positives = 114/127 (89%), Gaps = 4/127 (3%)
Frame = +2
Query: 632 RSGGYGSER-SGYGSQRSGRSGYGSERSSY--GSGSGSGSSDRVYVGNLSWGVDDMALES 802
R GGYGSER GYGSQRSG G GS+RSSY GSGSGSGS +R+YVGNLSWGVDDMALE+
Sbjct: 214 RGGGYGSERGGGYGSQRSGGYG-GSQRSSYGSGSGSGSGSGNRLYVGNLSWGVDDMALEN 272
Query: 803 LFSEQGKVVEARVIYDRDTGRSKGFGFVTLGSPQEVTRAINSLNGADLDGRQIRVSEAEA 982
LF+EQGKVVEARVIYDRD+GRSKGFGFVTL S QEV +AINSLNGADLDGRQIRVSEAEA
Sbjct: 273 LFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEA 332
Query: 983 RPPRRQF 1003
RPPR QF
Sbjct: 333 RPPRGQF 339
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 330 bits (845), Expect = 3e-088
Identities = 185/232 (79%), Positives = 195/232 (84%), Gaps = 17/232 (7%)
Frame = +2
Query: 113 SSFNPKSLLPLCVSR--SASVLPPSLSFKLHS---LSLFASS----SSPAQYPSLFVRHV 265
S+FNPKS LPLCVSR S SVLPPSLSFKLHS +S+FASS SSPA+YPS FVR+V
Sbjct: 1 SAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEYPSRFVRNV 59
Query: 266 AVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVEM 445
AVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLAQLFESAGNVEM
Sbjct: 60 AVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEM 119
Query: 446 VEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSR 625
VEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSR
Sbjct: 120 VEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSR 179
Query: 626 GPRSGGYGSER-SGYGSQRSGRSGYGSER-SSYG---SGSGSGSSDRVYVGN 766
GPRSGGYGSER GYGS+R G GYGSER YG SG G G S R G+
Sbjct: 180 GPRSGGYGSERGGGYGSERGG--GYGSERGGGYGSQRSGGGYGGSQRSSYGS 229
Score = 203 bits (514), Expect = 8e-050
Identities = 106/129 (82%), Positives = 113/129 (87%), Gaps = 5/129 (3%)
Frame = +2
Query: 632 RSGGYGSER-SGYGSQRSGRSGYGSERSSY----GSGSGSGSSDRVYVGNLSWGVDDMAL 796
R GGYGSER GYGSQRSG GS+RSSY GSGSGSGS +R+YVGNLSWGVDDMAL
Sbjct: 198 RGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 257
Query: 797 ESLFSEQGKVVEARVIYDRDTGRSKGFGFVTLGSPQEVTRAINSLNGADLDGRQIRVSEA 976
E+LF+EQGKVVEARVIYDRD+GRSKGFGFVTL S QEV +AINSLNGADLDGRQIRVSEA
Sbjct: 258 ENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 317
Query: 977 EARPPRRQF 1003
EARPPR QF
Sbjct: 318 EARPPRGQF 326
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29
[Arabidopsis thaliana]
Length = 363
Score = 324 bits (829), Expect = 2e-086
Identities = 189/251 (75%), Positives = 198/251 (78%), Gaps = 37/251 (14%)
Frame = +2
Query: 83 MSASASSVSLSSFNPKSLLPLCVSR--SASVLPPSLSFKLHS---LSLFASS----SSPA 235
MSASAS SLS+FNPKS LPLCVSR S SVLPPSLSFKLHS +S+FASS SSPA
Sbjct: 1 MSASAS--SLSAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALKCSSPA 57
Query: 236 QYPSLFVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQ 415
+YPS FVR+VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLAQ
Sbjct: 58 EYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQ 117
Query: 416 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGY-------------- 553
LFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGY
Sbjct: 118 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLL 177
Query: 554 -------EFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSER-SGYGSQRSGRSGYGSER 709
EFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSER GYGS+R G GYGSER
Sbjct: 178 IRVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGG--GYGSER 235
Query: 710 -SSYGSGSGSG 739
YGS G G
Sbjct: 236 GGGYGSERGGG 246
Score = 203 bits (514), Expect = 8e-050
Identities = 106/129 (82%), Positives = 113/129 (87%), Gaps = 5/129 (3%)
Frame = +2
Query: 632 RSGGYGSER-SGYGSQRSGRSGYGSERSSY----GSGSGSGSSDRVYVGNLSWGVDDMAL 796
R GGYGSER GYGSQRSG GS+RSSY GSGSGSGS +R+YVGNLSWGVDDMAL
Sbjct: 235 RGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMAL 294
Query: 797 ESLFSEQGKVVEARVIYDRDTGRSKGFGFVTLGSPQEVTRAINSLNGADLDGRQIRVSEA 976
E+LF+EQGKVVEARVIYDRD+GRSKGFGFVTL S QEV +AINSLNGADLDGRQIRVSEA
Sbjct: 295 ENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 354
Query: 977 EARPPRRQF 1003
EARPPR QF
Sbjct: 355 EARPPRGQF 363
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 267 bits (682), Expect = 3e-069
Identities = 157/226 (69%), Positives = 174/226 (76%), Gaps = 17/226 (7%)
Frame = +2
Query: 89 ASASSVSLSSFNPKSLLPLCVSRSASV--LPPSLSFKLH----SLSLFASSSSPAQYPSL 250
ASASS++LSSFNPKS LP CVSR ASV LPPSLSFKL+ S S+ A +SPA S
Sbjct: 3 ASASSLALSSFNPKS-LPFCVSRPASVSLLPPSLSFKLNSDSVSFSIAAKWNSPA---SR 58
Query: 251 FVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESA 430
FVR+VA++S+FEVEED FADD +P ++ SFSADLKLFVGNL F+VDSAQLAQLFESA
Sbjct: 59 FVRNVAITSEFEVEEDG-FADDAAP---QQQSFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 431 GNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKRE 610
GNVEMVEVIYDKVTGRSRGFGFVTMSS +E EAAA QFNGYE +GRPLRVNAGPPPPKRE
Sbjct: 115 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKRE 174
Query: 611 ESFSRGPRSGGYGSERSGYGSQRSGRSGYGSERSSYGSGSGSGSSD 748
+ FSRGPRS +GS SGYG G SG GS Y G D
Sbjct: 175 DGFSRGPRS-SFGSSGSGYGG--GGGSGAGSGNRVYVGNLSWGVDD 217
Score = 179 bits (454), Expect = 7e-043
Identities = 92/114 (80%), Positives = 97/114 (85%), Gaps = 2/114 (1%)
Frame = +2
Query: 668 GSQRSGRSGYGSERSSY--GSGSGSGSSDRVYVGNLSWGVDDMALESLFSEQGKVVEARV 841
G R RS +GS S Y G GSG+GS +RVYVGNLSWGVDDMALESLF+EQGKVVEARV
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARV 235
Query: 842 IYDRDTGRSKGFGFVTLGSPQEVTRAINSLNGADLDGRQIRVSEAEARPPRRQF 1003
IYDRD+GRSKGFGFVT S QEV AINSLNGADLDGRQIRVSEAEARPPRRQF
Sbjct: 236 IYDRDSGRSKGFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEAEARPPRRQF 289
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 258 bits (658), Expect = 2e-066
Identities = 156/226 (69%), Positives = 173/226 (76%), Gaps = 17/226 (7%)
Frame = +2
Query: 89 ASASSVSLSSFNPKSLLPLCVSRSASV--LPPSLSFKLH----SLSLFASSSSPAQYPSL 250
ASASS++LSSFNPKS LP VSR ASV L PSLSFKL+ S S+ A +SPA S
Sbjct: 3 ASASSLALSSFNPKS-LPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPA---SR 58
Query: 251 FVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESA 430
FVR+VA++S+FEVEED FA D PP+E+ SFSADLKLFVGNL F+VDSAQLAQLFESA
Sbjct: 59 FVRNVAITSEFEVEEDG-FA--DVAPPKEQ-SFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 431 GNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKRE 610
GNVEMVEVIYDK+TGRSRGFGFVTMSS +E EAAAQQFNGYE +GRPLRVNAGPPPPKRE
Sbjct: 115 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE 174
Query: 611 ESFSRGPRSGGYGSERSGYGSQRSGRSGYGSERSSYGSGSGSGSSD 748
+ FSRGPRS +GS SGYG G SG GS Y G D
Sbjct: 175 DGFSRGPRS-SFGSSGSGYGG--GGGSGAGSGNRVYVGNLSWGVDD 217
Score = 175 bits (442), Expect = 2e-041
Identities = 90/114 (78%), Positives = 96/114 (84%), Gaps = 2/114 (1%)
Frame = +2
Query: 668 GSQRSGRSGYGSERSSY--GSGSGSGSSDRVYVGNLSWGVDDMALESLFSEQGKVVEARV 841
G R RS +GS S Y G GSG+GS +RVYVGNLSWGVDDMALESLFSEQGKVVEARV
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARV 235
Query: 842 IYDRDTGRSKGFGFVTLGSPQEVTRAINSLNGADLDGRQIRVSEAEARPPRRQF 1003
IYDRD+GRSKGFGFVT S QEV AI SL+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 236 IYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 257 bits (654), Expect = 5e-066
Identities = 155/226 (68%), Positives = 172/226 (76%), Gaps = 17/226 (7%)
Frame = +2
Query: 89 ASASSVSLSSFNPKSLLPLCVSRSASV--LPPSLSFKLH----SLSLFASSSSPAQYPSL 250
ASASS++LSSFNPKS LP VSR ASV L PSLSFKL+ S S+ A +SPA S
Sbjct: 3 ASASSLALSSFNPKS-LPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPA---SR 58
Query: 251 FVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESA 430
F R+VA++S+FEVEED FA D PP+E+ SFSADLKLFVGNL F+VDSAQLAQLFESA
Sbjct: 59 FARNVAITSEFEVEEDG-FA--DVAPPKEQ-SFSADLKLFVGNLPFNVDSAQLAQLFESA 114
Query: 431 GNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKRE 610
GNVEMVEVIYDK+TGRSRGFGFVTMSS +E EAAAQQFNGYE +GRPLRVNAGPPPPKRE
Sbjct: 115 GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE 174
Query: 611 ESFSRGPRSGGYGSERSGYGSQRSGRSGYGSERSSYGSGSGSGSSD 748
+ FSRGPRS +GS SGYG G SG GS Y G D
Sbjct: 175 DGFSRGPRS-SFGSSGSGYGG--GGGSGAGSGNRVYVGNLSWGVDD 217
Score = 175 bits (442), Expect = 2e-041
Identities = 90/114 (78%), Positives = 96/114 (84%), Gaps = 2/114 (1%)
Frame = +2
Query: 668 GSQRSGRSGYGSERSSY--GSGSGSGSSDRVYVGNLSWGVDDMALESLFSEQGKVVEARV 841
G R RS +GS S Y G GSG+GS +RVYVGNLSWGVDDMALESLFSEQGKVVEARV
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARV 235
Query: 842 IYDRDTGRSKGFGFVTLGSPQEVTRAINSLNGADLDGRQIRVSEAEARPPRRQF 1003
IYDRD+GRSKGFGFVT S QEV AI SL+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 236 IYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 201 bits (509), Expect = 3e-049
Identities = 125/198 (63%), Positives = 139/198 (70%), Gaps = 23/198 (11%)
Frame = +2
Query: 86 SASASSVSLSSFNPKSLLPLCVSRSASVLPPSLSFKLHS------LSLFAS----SSSPA 235
+ASASS+ L S NPK+ L LC P SLSFKLH+ SLF+S P
Sbjct: 3 TASASSLVLPSLNPKT-LSLCNPNK----PISLSFKLHAKPISIPSSLFSSFVPLQQQPY 57
Query: 236 QYPSLFVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQ 415
S FV VA+SS+F +E+D+ +D D SSFS DLKLFVGNL F+VDSAQLA
Sbjct: 58 SSSSRFVPSVAISSEFG-QEEDVSSDGD------ESSFSQDLKLFVGNLPFNVDSAQLAG 110
Query: 416 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPP 595
LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSS E EAAAQQFNGYE EGR LRVN+G P
Sbjct: 111 LFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSG-P 169
Query: 596 PPKREESFSRGPRSGGYG 649
PP+RE SFSR PR GG G
Sbjct: 170 PPQRESSFSRSPRFGGGG 187
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 187 bits (474), Expect = 4e-045
Identities = 120/219 (54%), Positives = 145/219 (66%), Gaps = 19/219 (8%)
Frame = +2
Query: 92 SASSVSLSSFN-PKSLLPLCVSRSASV----LPPSL-SFKLH--SLSLFASSSSPAQYPS 247
SASS+ L S + PK+ L +S+ SV LP S S KLH S+SL SS S
Sbjct: 3 SASSLVLPSLSLPKT---LAISKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSS 59
Query: 248 LFVRHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFES 427
FVR+VAVSSD+E +++D+ +D+ P SFS DLKLFVGNL F+VDSA LA LFE
Sbjct: 60 RFVRNVAVSSDYE-QDEDVLSDEGEP------SFSPDLKLFVGNLPFNVDSAGLAGLFEQ 112
Query: 428 AGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKR 607
AGNVEMVEVIYDK+TGRSRGFGFVTMS+ E EAAAQQFNGYE EGR LRVN+GPPP +R
Sbjct: 113 AGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARR 172
Query: 608 EESFSRGPRSGGYGSERSGYGSQRSGRSGYGSERSSYGS 724
E S RG S + E + + R G + + R G+
Sbjct: 173 ENSNFRGENS-NFRGENTNFRGPRGGANLNSTNRIYVGN 210
>gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 177 bits (448), Expect = 4e-042
Identities = 108/196 (55%), Positives = 126/196 (64%), Gaps = 17/196 (8%)
Frame = +2
Query: 95 ASSVSLSSFNPKSLLPL----CVSRSASVLPPS--LSFKLHSLSLFASSSSPAQYPSLFV 256
A+S++L + ++ PL C S S S+ P S +S L SSSSP S FV
Sbjct: 5 AASLALPTLTLRTRQPLCSPQCFSSSLSLTPNSKPISISAVFLKTTLSSSSPLSLSSRFV 64
Query: 257 RHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGN 436
HV+V +E+D F D D P SFS DLKLFVGNL F VDSA+LA+LFESAGN
Sbjct: 65 PHVSVLE----QEEDTFGDGDGP------SFSRDLKLFVGNLPFSVDSARLAELFESAGN 114
Query: 437 VEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREES 616
VE+VEVIYDK TGRSRGFGFVTMSS EAEAAA+QFNGYE +GR LRVN+G PPP R ES
Sbjct: 115 VEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSG-PPPARNES 173
Query: 617 FSRGPRSGGYGSERSG 664
R +GS G
Sbjct: 174 APRFRGGSSFGSRGGG 189
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 173 bits (436), Expect = 9e-041
Identities = 106/186 (56%), Positives = 124/186 (66%), Gaps = 16/186 (8%)
Frame = +2
Query: 101 SVSLSSFNPKSL-LPLCVSRSASV----LPPSLSFKLHSLSLFASSSSPAQYPSLFVRHV 265
S+ S P++L LP S++ S+ LPPS SL+L SSSS + S FVR V
Sbjct: 7 SLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPS------SLNLSLSSSSSC-FSSRFVRKV 59
Query: 266 AVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVEM 445
+ SDF+ ED +D +E +FS DLK+FVGNL F DSA LA+LFE AGNVEM
Sbjct: 60 TL-SDFDQIED---VEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEM 115
Query: 446 VEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSR 625
VEVIYDK+TGRSRGFGFVTMSS E EAA QQFNGYE +GR LRVN+GPPP KRE S R
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFR 175
Query: 626 GPRSGG 643
G GG
Sbjct: 176 GGSRGG 181
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,498,019,856,450
Number of Sequences: 15229318
Number of Extensions: 2498019856450
Number of Successful Extensions: 628698129
Number of sequences better than 0.0: 0
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