BLASTX 7.6.2
Query= UN21259 /QuerySize=674
(673 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F ... 179 2e-044
sp|Q3T0Z8|RUXF_BOVIN Small nuclear ribonucleoprotein F OS=Bos ta... 138 6e-032
sp|P62306|RUXF_HUMAN Small nuclear ribonucleoprotein F OS=Homo s... 138 6e-032
sp|P62307|RUXF_MOUSE Small nuclear ribonucleoprotein F OS=Mus mu... 138 6e-032
sp|P62321|RUXF_XENLA Small nuclear ribonucleoprotein F OS=Xenopu... 138 6e-032
sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F OS=Drosop... 133 1e-030
sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F ... 125 3e-028
sp|O59734|RUXF_SCHPO Probable small nuclear ribonucleoprotein F ... 112 3e-024
sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyo... 108 5e-023
sp|Q9P5Z8|RUXF_NEUCR Probable small nuclear ribonucleoprotein F ... 101 8e-021
sp|P54999|RUXF_YEAST Small nuclear ribonucleoprotein F OS=Saccha... 86 2e-016
sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS... 75 3e-013
sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS... 74 6e-013
sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS... 74 6e-013
sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS... 74 6e-013
sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS... 73 2e-012
sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS... 72 4e-012
sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS... 69 2e-011
sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS... 68 5e-011
sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS... 67 9e-011
>sp|Q9SUM2|RUXF_ARATH Probable small nuclear ribonucleoprotein F OS=Arabidopsis
thaliana GN=At4g30220 PE=2 SV=1
Length = 88
Score = 179 bits (452), Expect = 2e-044
Identities = 86/88 (97%), Positives = 87/88 (98%)
Frame = +3
Query: 129 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 308
MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL
Sbjct: 1 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 60
Query: 309 GEILIRCNNVLYVRGVPEDEELADAEQD 392
GEILIRCNNVLYVRGVPEDEEL DA+QD
Sbjct: 61 GEILIRCNNVLYVRGVPEDEELEDADQD 88
>sp|Q3T0Z8|RUXF_BOVIN Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF
PE=3 SV=2
Length = 86
Score = 138 bits (345), Expect = 6e-032
Identities = 61/79 (77%), Positives = 72/79 (91%)
Frame = +3
Query: 135 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 314
++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL NTEEYIDG L+G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 315 ILIRCNNVLYVRGVPEDEE 371
+LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80
>sp|P62306|RUXF_HUMAN Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF
PE=1 SV=1
Length = 86
Score = 138 bits (345), Expect = 6e-032
Identities = 61/79 (77%), Positives = 72/79 (91%)
Frame = +3
Query: 135 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 314
++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL NTEEYIDG L+G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 315 ILIRCNNVLYVRGVPEDEE 371
+LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80
>sp|P62307|RUXF_MOUSE Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf
PE=2 SV=1
Length = 86
Score = 138 bits (345), Expect = 6e-032
Identities = 61/79 (77%), Positives = 72/79 (91%)
Frame = +3
Query: 135 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 314
++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL NTEEYIDG L+G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 315 ILIRCNNVLYVRGVPEDEE 371
+LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80
>sp|P62321|RUXF_XENLA Small nuclear ribonucleoprotein F OS=Xenopus laevis
GN=snrpf PE=3 SV=1
Length = 86
Score = 138 bits (345), Expect = 6e-032
Identities = 61/79 (77%), Positives = 72/79 (91%)
Frame = +3
Query: 135 TIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGE 314
++P+NPKPFLN LTGK V+VKLKWGMEYKG+L SVD YMN+QL NTEEYIDG L+G+LGE
Sbjct: 2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGE 61
Query: 315 ILIRCNNVLYVRGVPEDEE 371
+LIRCNNVLY+RGV E+EE
Sbjct: 62 VLIRCNNVLYIRGVEEEEE 80
>sp|Q24297|RUXF_DROME Small nuclear ribonucleoprotein F OS=Drosophila
melanogaster GN=DebB PE=1 SV=2
Length = 88
Score = 133 bits (333), Expect = 1e-030
Identities = 58/80 (72%), Positives = 70/80 (87%)
Frame = +3
Query: 132 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLG 311
A +P+NPKPFLN LTGK V+VKLKWG EYKGFL SVD YMN+QL NTEE I+G +TGNLG
Sbjct: 3 AGMPINPKPFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLG 62
Query: 312 EILIRCNNVLYVRGVPEDEE 371
E+LIRCNNVLY++G+ +D+E
Sbjct: 63 EVLIRCNNVLYIKGMEDDDE 82
>sp|P34659|RUXF_CAEEL Probable small nuclear ribonucleoprotein F
OS=Caenorhabditis elegans GN=snr-5 PE=1 SV=1
Length = 85
Score = 125 bits (313), Expect = 3e-028
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = +3
Query: 132 ATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLG 311
A PVNPKPFLN+LTGK V+ KLKWGMEYKG L +VDSYMNLQL + EEYIDG GNLG
Sbjct: 3 AVQPVNPKPFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLG 62
Query: 312 EILIRCNNVLYVRGVPEDEE 371
EILIRCNNVLYV GV + E
Sbjct: 63 EILIRCNNVLYVGGVDGENE 82
>sp|O59734|RUXF_SCHPO Probable small nuclear ribonucleoprotein F
OS=Schizosaccharomyces pombe GN=smf1 PE=2 SV=1
Length = 78
Score = 112 bits (278), Expect = 3e-024
Identities = 53/73 (72%), Positives = 60/73 (82%)
Frame = +3
Query: 129 MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNL 308
M+ +PVNPKPFL L GK V+V+LKWG EYKG L SVDSYMNLQL N EE +DG TG+L
Sbjct: 1 MSFVPVNPKPFLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDL 60
Query: 309 GEILIRCNNVLYV 347
GEILIRCNNVL+V
Sbjct: 61 GEILIRCNNVLWV 73
>sp|Q54XP2|RUXF_DICDI Small nuclear ribonucleoprotein F OS=Dictyostelium
discoideum GN=snrpf PE=3 SV=1
Length = 91
Score = 108 bits (268), Expect = 5e-023
Identities = 51/81 (62%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
Frame = +3
Query: 150 PKPFLNNLTGKTVIVKLKW-GMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIR 326
PKPFL +L GK + V+LKW GMEY+G LASVDSYMNLQL TEE+IDG G LGE+LIR
Sbjct: 9 PKPFLYDLKGKKIAVRLKWGGMEYRGILASVDSYMNLQLAATEEWIDGANKGPLGEVLIR 68
Query: 327 CNNVLYVRGVPEDEELADAEQ 389
CNNVL+VRG+ ++++ + +Q
Sbjct: 69 CNNVLFVRGIDDEQQQSQQQQ 89
>sp|Q9P5Z8|RUXF_NEUCR Probable small nuclear ribonucleoprotein F OS=Neurospora
crassa GN=B2O8.190 PE=3 SV=1
Length = 90
Score = 101 bits (249), Expect = 8e-021
Identities = 46/89 (51%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Frame = +3
Query: 129 MATIPVNPKPFLNNLTGKTVIVKLKWG-MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGN 305
M+ +PVNP+PFL +L V ++LKWG EY G L S+DSYMN+QL +T+EYI+ + TG
Sbjct: 1 MSFVPVNPRPFLQDLVNSFVTIRLKWGETEYVGRLVSIDSYMNIQLSDTKEYINRKFTGA 60
Query: 306 LGEILIRCNNVLYVRGVPEDEELADAEQD 392
LG++LIRCNNVLY++ E E D + +
Sbjct: 61 LGQVLIRCNNVLYIKKADEAETSGDVKME 89
>sp|P54999|RUXF_YEAST Small nuclear ribonucleoprotein F OS=Saccharomyces
cerevisiae GN=SMX3 PE=1 SV=1
Length = 86
Score = 86 bits (211), Expect = 2e-016
Identities = 43/74 (58%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Frame = +3
Query: 141 PVNPKPFLNNLTGKTVIVKLKW-GMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEI 317
PVNPKPFL L V VKLK+ EY+G L S D+Y NLQL EE++ G G LGEI
Sbjct: 12 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEI 71
Query: 318 LIRCNNVLYVRGVP 359
IRCNNVLY+R +P
Sbjct: 72 FIRCNNVLYIRELP 85
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6
OS=Schizosaccharomyces pombe GN=lsm6 PE=2 SV=1
Length = 75
Score = 75 bits (183), Expect = 3e-013
Identities = 34/72 (47%), Positives = 49/72 (68%)
Frame = +3
Query: 147 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIR 326
+P FLN + GK V+++L G++YKG L+ +D YMNL L TEEY++G+ T G+ IR
Sbjct: 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIR 63
Query: 327 CNNVLYVRGVPE 362
NNVLYV + +
Sbjct: 64 GNNVLYVSALDD 75
>sp|A6R363|LSM6_AJECN U6 snRNA-associated Sm-like protein LSm6 OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=LSM6 PE=3 SV=1
Length = 80
Score = 74 bits (181), Expect = 6e-013
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = +3
Query: 147 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIR 326
+P FL+ +TG V VKL G+ YKG L SVD YMN+ L TEEY+DG+L + G+ +R
Sbjct: 11 DPSAFLSEITGAPVTVKLNSGVVYKGELQSVDGYMNIALEKTEEYVDGKLRRSYGDAFVR 70
Query: 327 CNNVLYV 347
NNVLY+
Sbjct: 71 GNNVLYI 77
>sp|P62312|LSM6_HUMAN U6 snRNA-associated Sm-like protein LSm6 OS=Homo sapiens
GN=LSM6 PE=1 SV=1
Length = 80
Score = 74 bits (181), Expect = 6e-013
Identities = 33/66 (50%), Positives = 45/66 (68%)
Frame = +3
Query: 150 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 329
P FL + G+ V+VKL G++Y+G LA +D YMN+ L TEEY++GQL G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 330 NNVLYV 347
NNVLY+
Sbjct: 68 NNVLYI 73
>sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus
GN=Lsm6 PE=2 SV=1
Length = 80
Score = 74 bits (181), Expect = 6e-013
Identities = 33/66 (50%), Positives = 45/66 (68%)
Frame = +3
Query: 150 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 329
P FL + G+ V+VKL G++Y+G LA +D YMN+ L TEEY++GQL G+ IR
Sbjct: 8 PSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFIRG 67
Query: 330 NNVLYV 347
NNVLY+
Sbjct: 68 NNVLYI 73
>sp|B0DWN3|LSM6_LACBS U6 snRNA-associated Sm-like protein LSm6 OS=Laccaria
bicolor (strain S238N-H82) GN=LSM6 PE=3 SV=1
Length = 99
Score = 73 bits (177), Expect = 2e-012
Identities = 34/76 (44%), Positives = 49/76 (64%)
Frame = +3
Query: 120 PKTMATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLT 299
P AT +P FL + GK VIV+L G++Y+G L+ +D YMN+ L TEE+++G +T
Sbjct: 18 PPPQATHTGSPTDFLKGVVGKRVIVRLTSGVDYRGLLSCLDGYMNIALEQTEEHVNGVVT 77
Query: 300 GNLGEILIRCNNVLYV 347
G+ IR NNVLY+
Sbjct: 78 NRYGDAFIRGNNVLYI 93
>sp|Q1DRN0|LSM6_COCIM U6 snRNA-associated Sm-like protein LSm6 OS=Coccidioides
immitis GN=LSM6 PE=3 SV=1
Length = 80
Score = 72 bits (174), Expect = 4e-012
Identities = 31/67 (46%), Positives = 48/67 (71%)
Frame = +3
Query: 147 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIR 326
+P FL+ +TG +V VKL G+ YKG L S+D YMN+ L T+E+++G+L + G++ +R
Sbjct: 11 DPSAFLSGITGASVTVKLNSGVVYKGELQSIDGYMNIALEKTQEFVNGKLRKSYGDVFVR 70
Query: 327 CNNVLYV 347
NNVLY+
Sbjct: 71 GNNVLYI 77
>sp|Q4WNI0|LSM6_ASPFU U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus
fumigatus GN=lsm6 PE=3 SV=2
Length = 80
Score = 69 bits (167), Expect = 2e-011
Identities = 33/67 (49%), Positives = 44/67 (65%)
Frame = +3
Query: 147 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIR 326
+P FL + G V VKL G+ YKG L SVD YMN+ L +EE++DG+L + G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALERSEEFVDGKLKRSYGDAFIR 70
Query: 327 CNNVLYV 347
NNVLY+
Sbjct: 71 GNNVLYI 77
>sp|A1DM27|LSM6_NEOFI U6 snRNA-associated Sm-like protein LSm6 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=lsm6
PE=3 SV=2
Length = 80
Score = 68 bits (164), Expect = 5e-011
Identities = 32/67 (47%), Positives = 44/67 (65%)
Frame = +3
Query: 147 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIR 326
+P FL + G V VKL G+ Y+G L SVD YMN+ L +EE++DG+L + G+ IR
Sbjct: 11 DPSAFLGEIIGAPVTVKLNSGVVYRGELQSVDGYMNIALERSEEFVDGKLRRSYGDAFIR 70
Query: 327 CNNVLYV 347
NNVLY+
Sbjct: 71 GNNVLYI 77
>sp|A1CE19|LSM6_ASPCL U6 snRNA-associated Sm-like protein LSm6 OS=Aspergillus
clavatus GN=lsm6 PE=3 SV=2
Length = 78
Score = 67 bits (162), Expect = 9e-011
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +3
Query: 147 NPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIR 326
+P FL+ + G V VKL G+ YKG L SVD YMN+ L ++E++DG+L + G+ IR
Sbjct: 10 DPSAFLSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQSKEFMDGKLRRSYGDAFIR 69
Query: 327 CNNVLYV 347
NNVLY+
Sbjct: 70 GNNVLYI 76
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,891,173,716
Number of Sequences: 518415
Number of Extensions: 89891173716
Number of Successful Extensions: 595657870
Number of sequences better than 0.0: 0
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