BLASTX 7.6.2
Query= UN21874 /QuerySize=1369
(1368 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 599 2e-171
TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 599 2e-171
TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA b... 555 2e-158
TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42... 436 1e-122
TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; D... 134 1e-031
TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, N... 82 7e-016
TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; D... 65 1e-010
>TAIR9_protein||AT1G60850.2 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 599 bits (1542), Expect = 2e-171
Identities = 302/375 (80%), Positives = 332/375 (88%), Gaps = 4/375 (1%)
Frame = +3
Query: 96 MVTQEDKIFAKNFCIDDLPDVPAGLPPHLKLKQNRVVSKKDTSVVDTSDVIYSGSYVSS- 272
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q RVVS K+ + T+ IYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVS-KNNAPAHTASAIYSGTYVSST 59
Query: 273 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 452
D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 453 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTENDQPNEKNTIVFKLHVKCPKGQSRLHV 632
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E+DQ NEKNTIVFKLHVKCPK + RL V
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179
Query: 633 LTNELQWLPNGSEFLKESGDSTSTSKPRTYTSFSCSQDSLPEFADNPITPSHLDILISKL 812
LT++L+WLPNGSE L+ES TSKP+TYTSFSCSQDSLPEFA+NPITP LDILI+KL
Sbjct: 180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237
Query: 813 SPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVF 992
+PGQEIELEAHAVKGIGKTHAKWSPVGTAWYRM PEVVL GEVEDE AERLV CP NVF
Sbjct: 238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVF 297
Query: 993 DIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVKNHFIFKIESTGSLPPDVL 1172
DIEDMG G+KRATVAQPR CTLCKEC+RD DLVD VDL SVKNHFIF IESTGSLPP+VL
Sbjct: 298 DIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVL 357
Query: 1173 FTEAVKILEDKCERV 1217
FTEAVKILE KCE +
Sbjct: 358 FTEAVKILEAKCEAI 372
>TAIR9_protein||AT1G60850.1 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398078-22400155 REVERSE
Length = 376
Score = 599 bits (1542), Expect = 2e-171
Identities = 302/375 (80%), Positives = 332/375 (88%), Gaps = 4/375 (1%)
Frame = +3
Query: 96 MVTQEDKIFAKNFCIDDLPDVPAGLPPHLKLKQNRVVSKKDTSVVDTSDVIYSGSYVSS- 272
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q RVVS K+ + T+ IYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVS-KNNAPAHTASAIYSGTYVSST 59
Query: 273 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 452
D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 453 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTENDQPNEKNTIVFKLHVKCPKGQSRLHV 632
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E+DQ NEKNTIVFKLHVKCPK + RL V
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179
Query: 633 LTNELQWLPNGSEFLKESGDSTSTSKPRTYTSFSCSQDSLPEFADNPITPSHLDILISKL 812
LT++L+WLPNGSE L+ES TSKP+TYTSFSCSQDSLPEFA+NPITP LDILI+KL
Sbjct: 180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237
Query: 813 SPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVF 992
+PGQEIELEAHAVKGIGKTHAKWSPVGTAWYRM PEVVL GEVEDE AERLV CP NVF
Sbjct: 238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELAERLVNVCPQNVF 297
Query: 993 DIEDMGNGRKRATVAQPRNCTLCKECIRDHDLVDLVDLRSVKNHFIFKIESTGSLPPDVL 1172
DIEDMG G+KRATVAQPR CTLCKEC+RD DLVD VDL SVKNHFIF IESTGSLPP+VL
Sbjct: 298 DIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVL 357
Query: 1173 FTEAVKILEDKCERV 1217
FTEAVKILE KCE +
Sbjct: 358 FTEAVKILEAKCEAI 372
>TAIR9_protein||AT1G60620.1 | Symbols: ATRPAC43 | ATRPAC43; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22331225-22333370 FORWARD
Length = 386
Score = 555 bits (1430), Expect = 2e-158
Identities = 283/381 (74%), Positives = 322/381 (84%), Gaps = 4/381 (1%)
Frame = +3
Query: 96 MVTQEDKIFAKNFCIDDLPDVPAGLPPHLKLKQNRVVSKKDTSVVDTSDVIYSGSYVSSG 275
+VT E+K AKNF I DLPDVP GLPPHL+L++ RVV KKD+++ T+ + +SG+Y S G
Sbjct: 9 IVTDEEKREAKNFNIFDLPDVPTGLPPHLELQRTRVVCKKDSNIHPTA-ITFSGAYSSMG 67
Query: 276 VDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIA 455
VDN+V+L NF EDFKVDVIS TETDM FDMIG+ A ANAFRRIL+AE+PSMAIEKV +A
Sbjct: 68 VDNSVRLENFSEDFKVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVA 127
Query: 456 YNTSLIVDEVLAHRIGLIPIAADPRLFEYLTENDQPNEKNTIVFKLHVKCPKGQSRLHVL 635
NTS+I DEVLAHR+GLIPIAADPRLFEYL+ENDQPNEKNTIVFKLHVKC KG R VL
Sbjct: 128 NNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVL 187
Query: 636 TNELQWLPNGSEFLKESGDSTSTSKPRTYTSFSCSQDSLPEFADNPITPSHLDILISKLS 815
T+EL+WLPNGSE +KESG ST+T P+TYTSF+ SQDS PEFA+NPI P+ DILI+KL
Sbjct: 188 TSELKWLPNGSELIKESGGSTTT--PKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLG 245
Query: 816 PGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMLPEVVLLGEVEDEKAERLVKTCPMNVFD 995
PGQEIELEAHAVKGIGKTHAKWSPV TAWYRMLPEVVLL E E + AE LVK CP VFD
Sbjct: 246 PGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVFD 305
Query: 996 IEDMGNGRKRATVAQPRNCTLCKECIRDH-DLVDLVDLRSVKNHFIFKIESTGSLPPDVL 1172
IEDMG GRKRATVA+PR+C+LC+ECIRD + D VDLR VKNHFIF IESTGS PP+VL
Sbjct: 306 IEDMGQGRKRATVARPRDCSLCRECIRDGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVL 365
Query: 1173 FTEAVKILEDKCERVIADLS* 1235
F EAVKILEDKCERVI++LS*
Sbjct: 366 FNEAVKILEDKCERVISELS* 386
>TAIR9_protein||AT1G60850.3 | Symbols: ATRPAC42, AAC42 | ATRPAC42; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr1:22398588-22400155 REVERSE
Length = 303
Score = 436 bits (1121), Expect = 1e-122
Identities = 221/277 (79%), Positives = 247/277 (89%), Gaps = 4/277 (1%)
Frame = +3
Query: 96 MVTQEDKIFAKNFCIDDLPDVPAGLPPHLKLKQNRVVSKKDTSVVDTSDVIYSGSYVSS- 272
MVT+ +K FAKNF IDDLPDVPAGLPPHLK +Q RVVS K+ + T+ IYSG+YVSS
Sbjct: 1 MVTKAEKQFAKNFNIDDLPDVPAGLPPHLKAQQTRVVS-KNNAPAHTASAIYSGTYVSST 59
Query: 273 GVDNTVKLGNFYEDFKVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 452
D+ VKLGNFY++FKVDV+S T+TDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI
Sbjct: 60 EEDDNVKLGNFYDNFKVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLI 119
Query: 453 AYNTSLIVDEVLAHRIGLIPIAADPRLFEYLTENDQPNEKNTIVFKLHVKCPKGQSRLHV 632
AYNTS+I+DEVLAHR+GLIPIAADPRLFEYL+E+DQ NEKNTIVFKLHVKCPK + RL V
Sbjct: 120 AYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKV 179
Query: 633 LTNELQWLPNGSEFLKESGDSTSTSKPRTYTSFSCSQDSLPEFADNPITPSHLDILISKL 812
LT++L+WLPNGSE L+ES TSKP+TYTSFSCSQDSLPEFA+NPITP LDILI+KL
Sbjct: 180 LTSDLKWLPNGSELLRES--ENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKL 237
Query: 813 SPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMLPEV 923
+PGQEIELEAHAVKGIGKTHAKWSPVGTAWYRM PEV
Sbjct: 238 APGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEV 274
>TAIR9_protein||AT2G15400.1 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr2:6713022-6714386 FORWARD
Length = 320
Score = 134 bits (337), Expect = 1e-031
Identities = 95/301 (31%), Positives = 155/301 (51%), Gaps = 40/301 (13%)
Frame = +3
Query: 354 EFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLIVDEVLAHRIGLIPIAADPRL 533
+F++ D + ANA RR++I+EVP+MAI V I N+S++ DE +A R+ LIP+ ++ +
Sbjct: 23 KFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAM 82
Query: 534 FEYLTEN------DQPNEKNTIVFKLHVKCPKGQSRLHVLTNELQWLPNGSEFLKESGDS 695
++ D+ E ++ F L KC Q+ L V + +L S D
Sbjct: 83 SMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQT-LDVTSRDLY-----------SADP 130
Query: 696 TSTSKPRTYTSFSCSQDSLPEFADNPITPSHLDILISKLSPGQEIELEAHAVKGIGKTHA 875
T T P +TS S + DS H I+I+KL GQE++L+A A KGIGK HA
Sbjct: 131 TVT--PVDFTSNSSTSDS----------SEHKGIIIAKLRRGQELKLKALARKGIGKDHA 178
Query: 876 KWSPVGTAWYRMLPEVV----LLGEVEDEKAERLVKTCPMNVFDIEDMGNGRKRATVAQP 1043
KWSP T Y P+++ ++ + DE+ L+++ P VF I+ + + V P
Sbjct: 179 KWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTG---QVVVVDP 235
Query: 1044 RNCTLCKECIRDHDLV---DLVDLRSVKNHFIFKIESTGSLPPDVLFTEAVKILEDKCER 1214
T +E I+ + + L+++ + F+F +ESTG+L L A+ IL+ K +
Sbjct: 236 EAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDA 295
Query: 1215 V 1217
+
Sbjct: 296 I 296
>TAIR9_protein||AT2G15430.1 | Symbols: RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A |
NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization
| chr2:6733661-6735482 FORWARD
Length = 320
Score = 82 bits (201), Expect = 7e-016
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Frame = +3
Query: 786 HLDILISKLSPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMLPEVV----LLGEVEDEK 953
H I+I KL GQE++L A A KGIGK HAKWSP T + P+++ ++ + DE+
Sbjct: 149 HKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEE 208
Query: 954 AERLVKTCPMNVFDIEDMGNGRKRATVAQPRNCTLCKECIRDHDLV---DLVDLRSVKNH 1124
L+++ P VF ++ + ++ V P T +E I+ + + L+++ +
Sbjct: 209 KIDLIESSPTKVFGMDPV---TRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDS 265
Query: 1125 FIFKIESTGSLPPDVLFTEAVKILEDKCERV 1217
FIF +ESTG++ L A+ +L+ K + V
Sbjct: 266 FIFTVESTGAVKASQLVLNAIDLLKQKLDAV 296
Score = 64 bits (154), Expect = 2e-010
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Frame = +3
Query: 297 GNFYEDF-KVDVISCTETDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSLI 473
G Y+ F K+ + + +F++ D + ANA RR++I+EVP++AI+ V I N+S++
Sbjct: 3 GATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVL 62
Query: 474 VDEVLAHRIGLIPIAADPRLFEYLT------ENDQPNEKNTIVFKLHVKCPKGQSRLHVL 635
DE +AHR+GLIP+ ++ + + + D E ++ F+L KC Q+ L V
Sbjct: 63 NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQT-LDVT 121
Query: 636 TNEL 647
+ +L
Sbjct: 122 SRDL 125
>TAIR9_protein||AT2G15400.2 | Symbols: RBP36B, NRPE3B | NRPE3B; DNA binding /
DNA-directed RNA polymerase/ protein dimerization |
chr2:6713022-6713918 FORWARD
Length = 236
Score = 65 bits (156), Expect = 1e-010
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Frame = +3
Query: 756 EFADNPIT---PSHLDILISKLSPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMLPEVV 926
+F N T H I+I+KL GQE++L+A A KGIGK HAKWSP T Y P+++
Sbjct: 136 DFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDII 195
Query: 927 ----LLGEVEDEKAERLVKTCPMNVFDIE 1001
++ + DE+ L+++ P VF I+
Sbjct: 196 INEEMMNTLTDEEKIDLIESSPTKVFGID 224
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,391,343,013
Number of Sequences: 33410
Number of Extensions: 11391343013
Number of Successful Extensions: 370310059
Number of sequences better than 0.0: 0
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