BLASTX 7.6.2
Query= UN22568 /QuerySize=1200
(1199 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THO... 320 2e-086
sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=T... 320 2e-086
sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=T... 319 3e-086
sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protei... 229 5e-059
sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyo... 206 3e-052
sp|Q8YTC2|Y2800_ANASP Uncharacterized WD repeat-containing prote... 107 3e-022
sp|Q8YV57|Y2124_ANASP Uncharacterized WD repeat-containing prote... 74 1e-012
sp|O61585|KTNB1_STRPU Katanin p80 WD40-containing subunit B1 OS=... 74 2e-012
sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subun... 60 3e-008
sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subun... 60 4e-008
sp|Q90ZL4|LIS1B_XENLA Lissencephaly-1 homolog B OS=Xenopus laevi... 58 1e-007
sp|Q6DE72|LIS1A_XENLA Lissencephaly-1 homolog A OS=Xenopus laevi... 57 2e-007
sp|P43034|LIS1_HUMAN Platelet-activating factor acetylhydrolase ... 57 2e-007
sp|P63005|LIS1_MOUSE Platelet-activating factor acetylhydrolase ... 57 2e-007
sp|Q5IS43|LIS1_PANTR Platelet-activating factor acetylhydrolase ... 57 2e-007
sp|P63004|LIS1_RAT Platelet-activating factor acetylhydrolase IB... 57 2e-007
sp|Q6NZH4|LIS1_XENTR Lissencephaly-1 homolog OS=Xenopus tropical... 57 2e-007
sp|P43033|LIS1_BOVIN Platelet-activating factor acetylhydrolase ... 57 2e-007
sp|Q9PTR5|LIS1_CHICK Platelet-activating factor acetylhydrolase ... 57 2e-007
>sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1
Length = 351
Score = 320 bits (818), Expect = 2e-086
Identities = 155/308 (50%), Positives = 212/308 (68%), Gaps = 11/308 (3%)
Frame = -3
Query: 1107 SREYQGHKKKVHSVAWNSNGTKLASGSVDQTARVWTIEPHGHSKVKDLELKGHTDSVDQL 928
+RE+ H KVHSVAW+ +G +LASGS D+TA V+ +E VK+ +GH DSVDQL
Sbjct: 48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQL 105
Query: 927 CWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYRPDGTHIAVGNRDDEL 748
CW P + DL TASGDK++R+WD R+ KC GENINI + PDG IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165
Query: 747 TILDVRKFNKSLYKRKFSYEVNEIAWNMSGDLFFLTTGLGTVEVLSYPLEKMQNDLKPVD 568
T +D K ++S + +F +EVNEI+WN ++FFLT G G + +LSYP +LKPV
Sbjct: 166 TFIDA-KTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYP------ELKPVQ 218
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
++ AH + C CI DP G+YFA GSAD+LVSLWD+ +++C+R F++LD PVRT+SF+H G
Sbjct: 219 SINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDG 278
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKSAKYYG--D 214
+ +ASASED FIDIA V+TG + ++ C + +V W+PK LLA+A DDK KY +
Sbjct: 279 KMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSRE 338
Query: 213 EGVFRIFG 190
G ++FG
Sbjct: 339 AGTVKLFG 346
>sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1
Length = 351
Score = 320 bits (818), Expect = 2e-086
Identities = 155/308 (50%), Positives = 212/308 (68%), Gaps = 11/308 (3%)
Frame = -3
Query: 1107 SREYQGHKKKVHSVAWNSNGTKLASGSVDQTARVWTIEPHGHSKVKDLELKGHTDSVDQL 928
+RE+ H KVHSVAW+ +G +LASGS D+TA V+ +E VK+ +GH DSVDQL
Sbjct: 48 TREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQL 105
Query: 927 CWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYRPDGTHIAVGNRDDEL 748
CW P + DL TASGDK++R+WD R+ KC GENINI + PDG IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165
Query: 747 TILDVRKFNKSLYKRKFSYEVNEIAWNMSGDLFFLTTGLGTVEVLSYPLEKMQNDLKPVD 568
T +D K ++S + +F +EVNEI+WN ++FFLT G G + +LSYP +LKPV
Sbjct: 166 TFIDA-KTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYP------ELKPVQ 218
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
++ AH + C CI DP G+YFA GSAD+LVSLWD+ +++C+R F++LD PVRT+SF+H G
Sbjct: 219 SINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDG 278
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKSAKYYG--D 214
+ +ASASED FIDIA V+TG + ++ C + +V W+PK LLA+A DDK KY +
Sbjct: 279 KMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSRE 338
Query: 213 EGVFRIFG 190
G ++FG
Sbjct: 339 AGTVKLFG 346
>sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1
Length = 351
Score = 319 bits (817), Expect = 3e-086
Identities = 155/308 (50%), Positives = 212/308 (68%), Gaps = 11/308 (3%)
Frame = -3
Query: 1107 SREYQGHKKKVHSVAWNSNGTKLASGSVDQTARVWTIEPHGHSKVKDLELKGHTDSVDQL 928
+RE+ H KVHSVAW+ +G +LASGS D+TA V+ +E VK+ +GH DSVDQL
Sbjct: 48 TREFLAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEK--DRLVKENNYRGHGDSVDQL 105
Query: 927 CWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYRPDGTHIAVGNRDDEL 748
CW P + DL TASGDK++R+WD R+ KC GENINI + PDG IAVGN+DD +
Sbjct: 106 CWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVV 165
Query: 747 TILDVRKFNKSLYKRKFSYEVNEIAWNMSGDLFFLTTGLGTVEVLSYPLEKMQNDLKPVD 568
T +D K ++S + +F +EVNEI+WN ++FFLT G G + +LSYP +LKPV
Sbjct: 166 TFIDA-KTHRSKAEEQFKFEVNEISWNNDNNMFFLTNGNGCINILSYP------ELKPVQ 218
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
++ AH + C CI DP G+YFA GSAD+LVSLWD+ +++C+R F++LD PVRT+SF+H G
Sbjct: 219 SINAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDG 278
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKSAKYYG--D 214
+ +ASASED FIDIA V+TG + ++ C + +V W+PK LLA+A DDK KY +
Sbjct: 279 KMLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSRE 338
Query: 213 EGVFRIFG 190
G ++FG
Sbjct: 339 AGTVKLFG 346
>sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protein C18B5.10c
OS=Schizosaccharomyces pombe GN=SPCC18B5.10c PE=2 SV=1
Length = 309
Score = 229 bits (582), Expect = 5e-059
Identities = 111/292 (38%), Positives = 172/292 (58%), Gaps = 8/292 (2%)
Frame = -3
Query: 1122 FKNLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARVWTIEPHGHSKVKDLELKGHTD 943
F L +R+ QG + + S+ WN +G++LAS S + VW + +L +G+
Sbjct: 12 FPELKTRDLQGQQGPIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGNRGY-G 70
Query: 942 SVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYRPDGTHIAVGN 763
V+QL WDP HSD + K +R WD RS K + E + ENI T+ P G + +
Sbjct: 71 LVEQLVWDPTHSDRLMAVYAGKMIRFWDFRSAKPIAEIESNYENIYATWSPSGNYCCASS 130
Query: 762 RDDELTILDVRKFNKSLYKRKFSYEVNEIAWNMSGDLFFLTTGLGTVEVLSYPLEKMQND 583
RDD L+ +D R+ + + + E NE W+ S DLFF+TTGLGTV+++ +P
Sbjct: 131 RDDMLSFIDARE-RRIMETFQQPCETNECCWSFSEDLFFMTTGLGTVQIMEWP------S 183
Query: 582 LKPVDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTIS 403
LK V + AH + C+CI P R+ A+G AD++ SLWD +++C R+ T++D P+RT+S
Sbjct: 184 LKRVYDIKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLS 243
Query: 402 FNHSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYA 247
F++ Y+AS SED ++DIA+ +TG + +IP +N V W+P ++LAYA
Sbjct: 244 FSYDSRYLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYA 295
>sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyostelium
discoideum GN=AAC3 PE=2 SV=2
Length = 478
Score = 206 bits (523), Expect = 3e-052
Identities = 99/257 (38%), Positives = 162/257 (63%), Gaps = 10/257 (3%)
Frame = -3
Query: 966 LELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYRPD 787
+ELKGH S++++ W PK++DL+A+A DK +++WD + GKC + ENI++ + PD
Sbjct: 222 IELKGHDGSIEKISWSPKNNDLLASAGTDKVIKIWDVKIGKCIGTVSTNSENIDVRWSPD 281
Query: 786 GTHIAVGNRDDELTILDVRKFNKSLYKRKFS-YEVNEIAWNMSGDLFFLTTGLGTVEVLS 610
G I RDD L ++D+ K+L KF+ E+N++ W+ +GDL + +G +E
Sbjct: 282 GQFIVACTRDDHLALIDLPTI-KTLKIYKFNGEELNQVGWDNNGDLILMANSMGNIEAYK 340
Query: 609 YPLEKMQNDLKPVDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTK 430
+ L K +K + TL HTA YC+ DP G+Y A GSADS+VSLWD+ DM+C++TF K
Sbjct: 341 F-LPKSTTHVKHLKTLYGHTASIYCMEFDPTGKYLAAGSADSIVSLWDIEDMMCVKTFIK 399
Query: 429 LDSPVRTISFNHSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAY 250
P R++SF+ G++IA++S + I+I ++++ + +H I C + ++S+ W+P LLAY
Sbjct: 400 STFPCRSVSFSFDGQFIAASSFESTIEIFHIESSQPIHTIEC-SGVSSLMWHPTLPLLAY 458
Query: 249 AGD------DKSAKYYG 217
A + D S + +G
Sbjct: 459 APEINENNKDPSIRVFG 475
>sp|Q8YTC2|Y2800_ANASP Uncharacterized WD repeat-containing protein alr2800
OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 107 bits (265), Expect = 3e-022
Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 35/321 (10%)
Frame = -3
Query: 1137 EETIPFKNLHSRE----YQGHKKKVHSVAWNSNGTKLASGSVDQTARVWTIEPHGHSKVK 970
+ TI N H+ E Y GH V+S+A++ + L SGS D+T ++W + H K
Sbjct: 831 DRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKT- 889
Query: 969 DLELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGE-NINITYR 793
L GHT+ V + + P L A S D+SVRLW+ R+G+C + + + + + +
Sbjct: 890 ---LHGHTNEVCSVAFSPDGQTL-ACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAFS 945
Query: 792 PDGTHIAVGNRDDELTILD--VRKFNKSL-------YKRKFSYEVNEIAWNMSGDLFFLT 640
PD +A G+ D + + D K+ SL Y FS + +A + S D
Sbjct: 946 PDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLA-SASTDSSVRL 1004
Query: 639 TGLGTVEVLSYPLEKMQNDLKPVDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMS 460
+ T + LE HT Y + P+G+ A GSAD V LW++S
Sbjct: 1005 WNISTGQCFQILLE--------------HTDWVYAVVFHPQGKIIATGSADCTVKLWNIS 1050
Query: 459 DMLCLRTFTKLDSPVRTISFNHSGEYIASASEDLFIDIANVQTGRTVHQIPCRA-AMNSV 283
CL+T ++ + ++++ G+ +ASAS D + + + TGR V + + + S
Sbjct: 1051 TGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSA 1110
Query: 282 EWNPKYNLLAYAGDDKSAKYY 220
++P ++A D++ K +
Sbjct: 1111 IFSPNGEIIATCSTDQTVKIW 1131
Score = 89 bits (218), Expect = 7e-017
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 8/230 (3%)
Frame = -3
Query: 903 LVATASGDKSVRLWDARSGKCTQQAELSGENIN-ITYRPDGTHIAVGNRDDELTILDVRK 727
L+AT D VR+W+ +SGK + + + PDG +A D+ + + VR
Sbjct: 656 LLATCDTDCHVRVWEVKSGKLLLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRD 715
Query: 726 FNKSLYKRKFSYEVNEIAWNMSGDLFFLTTGLGTVEVLSYPLEKMQNDLKPVDTLTAHTA 547
+EV +A++ G+ +G T+++ D + TLT HT
Sbjct: 716 GVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDI------QDGTCLQTLTGHTD 769
Query: 546 GCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSGEYIASAS 367
C+A P G A +AD + LWD+S CLRT VR+++F+ G+ +AS S
Sbjct: 770 WVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGS 829
Query: 366 EDLFIDIANVQTGRTVH-QIPCRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
D I I N TG + I ++ S+ ++P +L D++ K +
Sbjct: 830 GDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLW 879
>sp|Q8YV57|Y2124_ANASP Uncharacterized WD repeat-containing protein all2124
OS=Anabaena sp. (strain PCC 7120) GN=all2124 PE=4 SV=1
Length = 1683
Score = 74 bits (181), Expect = 1e-012
Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 24/261 (9%)
Frame = -3
Query: 960 LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGEN---INITYRP 790
L+GH D V + + +A+ S DK+++LW +R G+ + L+G ++++ P
Sbjct: 1068 LEGHKDGVISISIS-RDGQTIASGSLDKTIKLW-SRDGRLFR--TLNGHEDAVYSVSFSP 1123
Query: 789 DGTHIAVGNRDDELTILDVRKFNKSLYKRKFSYE--VNEIAWNMSGDLFFLTTGLGTVEV 616
DG IA G D + + + +L K +E VN + ++ G + ++++
Sbjct: 1124 DGQTIASGGSDKTIKLWQTS--DGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKL 1181
Query: 615 LSYPLEKMQNDLKPVDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTF 436
++ + TLT H+AG + P G+ A GS D V LW D L+T
Sbjct: 1182 WDTTSGQL------LMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLLKTL 1235
Query: 435 TKLDSPVRTISFNHSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYN-- 262
V ++SF+ G+ +ASAS D I + + G+ V + N W+ ++
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLVKTL---KGHNDSVWDVNFSSD 1292
Query: 261 --LLAYAGDDKSAKYYGDEGV 205
+A A D + K + G+
Sbjct: 1293 GKAIASASRDNTIKLWNRHGI 1313
>sp|O61585|KTNB1_STRPU Katanin p80 WD40-containing subunit B1
OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 74 bits (180), Expect = 2e-012
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 7/190 (3%)
Frame = -3
Query: 786 GTHIAVGNRDDELTILDVRKFNKSLYKRKFSYEVNEIAWNMSGDLFFLTTGLGTVEVLSY 607
G + G D ++ + V K N + + V+ + +N S +L + GT+++ Y
Sbjct: 29 GRVMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVDSVKFNSSEELVVAGSQSGTMKI--Y 86
Query: 606 PLEKMQNDLKPVDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKL 427
LE K V TLT H C+ P G + A GS D+ V LWD+ C+ T+
Sbjct: 87 DLE----PAKIVRTLTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGH 142
Query: 426 DSPVRTISFNHSGEYIASASEDLFIDIANVQTGRTVHQIPCR-AAMNSVEWNPKYNLLAY 250
V I F+ G+++ +ASED I + ++ G+ + + +E++P LLA
Sbjct: 143 SDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLAS 202
Query: 249 AGDDKSAKYY 220
D++ +++
Sbjct: 203 GSSDRTVQFW 212
>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo
sapiens GN=TAF5 PE=1 SV=3
Length = 800
Score = 60 bits (144), Expect = 3e-008
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Frame = -3
Query: 822 SGENINITYRPDGTHIAVGNRDDELTILDVRKFNKSLYKRKFSYEVNEIAWNMSGDLFFL 643
SG ++ PD ++ + D + + ++ F + + +Y V + ++ G +F+
Sbjct: 543 SGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG-YYFV 601
Query: 642 TTGLGTVEVLSYPLEKMQNDLKPVDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDM 463
+ G V L + +P+ H A C P Y A GSAD V LWD+
Sbjct: 602 SGGHDRVARL-----WATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDV 656
Query: 462 SDMLCLRTFTKLDSPVRTISFNHSGEYIASASED 361
+ C+R FT P+ +++F+ +G ++A+ + D
Sbjct: 657 LNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATD 690
>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus
musculus GN=Taf5 PE=2 SV=1
Length = 801
Score = 60 bits (143), Expect = 4e-008
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Frame = -3
Query: 822 SGENINITYRPDGTHIAVGNRDDELTILDVRKFNKSLYKRKFSYEVNEIAWNMSGDLFFL 643
SG ++ PD ++ + D + + ++ F + + +Y V + ++ G +F+
Sbjct: 544 SGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYG-YYFV 602
Query: 642 TTGLGTVEVLSYPLEKMQNDLKPVDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDM 463
+ G V L + +P+ H A C P Y A GSAD V LWD+
Sbjct: 603 SGGHDRVARL-----WATDHYQPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDV 657
Query: 462 SDMLCLRTFTKLDSPVRTISFNHSGEYIASASED 361
+ C+R FT P+ +++F+ +G ++A+ + D
Sbjct: 658 LNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATD 691
>sp|Q90ZL4|LIS1B_XENLA Lissencephaly-1 homolog B OS=Xenopus laevis GN=pafah1b1-b
PE=2 SV=3
Length = 410
Score = 58 bits (139), Expect = 1e-007
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD CLRT D V +++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECLRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>sp|Q6DE72|LIS1A_XENLA Lissencephaly-1 homolog A OS=Xenopus laevis GN=pafah1b1-a
PE=2 SV=3
Length = 410
Score = 57 bits (137), Expect = 2e-007
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD C+RT D V +++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>sp|P43034|LIS1_HUMAN Platelet-activating factor acetylhydrolase IB subunit
alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 57 bits (137), Expect = 2e-007
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD C+RT D V +++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>sp|P63005|LIS1_MOUSE Platelet-activating factor acetylhydrolase IB subunit
alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 57 bits (137), Expect = 2e-007
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD C+RT D V +++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>sp|Q5IS43|LIS1_PANTR Platelet-activating factor acetylhydrolase IB subunit
alpha OS=Pan troglodytes GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 57 bits (137), Expect = 2e-007
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD C+RT D V +++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>sp|P63004|LIS1_RAT Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 57 bits (137), Expect = 2e-007
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD C+RT D V +++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>sp|Q6NZH4|LIS1_XENTR Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1
PE=2 SV=3
Length = 410
Score = 57 bits (137), Expect = 2e-007
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD C+RT D V +++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>sp|P43033|LIS1_BOVIN Platelet-activating factor acetylhydrolase IB subunit
alpha OS=Bos taurus GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 57 bits (136), Expect = 2e-007
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD C+RT D V +++ +G
Sbjct: 145 TLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>sp|Q9PTR5|LIS1_CHICK Platelet-activating factor acetylhydrolase IB subunit
alpha OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 57 bits (136), Expect = 2e-007
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Frame = -3
Query: 567 TLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDMSDMLCLRTFTKLDSPVRTISFNHSG 388
TL HT I+ D G+ A SAD + LWD C+RT D V +++ +G
Sbjct: 145 TLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 387 EYIASASEDLFIDIANVQTGRTVHQIP-CRAAMNSVEWNPKYNLLAYAGDDKSAKYY 220
++I SAS D I + VQTG V R + V N L+A +D++ + +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,892,683,958
Number of Sequences: 518415
Number of Extensions: 92892683958
Number of Successful Extensions: 611291351
Number of sequences better than 0.0: 0
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