BLASTX 7.6.2
Query= UN22814 /QuerySize=579
(578 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS... 140 8e-033
sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS... 140 8e-033
sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protei... 129 1e-029
sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS... 119 2e-026
sp|O94408|LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2 OS... 115 2e-025
sp|A9CTE0|LSM2_ENTBH Probable U6 snRNA-associated Sm-like protei... 68 3e-011
sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protei... 50 9e-006
>sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens
GN=LSM2 PE=1 SV=1
Length = 95
Score = 140 bits (351), Expect = 8e-033
Identities = 68/90 (75%), Positives = 77/90 (85%)
Frame = +2
Query: 146 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 325
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 326 FIRGSVVRYVQLPPDGVDVDLLHDAARREA 415
FIRGSVVRYVQLP D VD LL DAAR+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus
GN=Lsm2 PE=2 SV=1
Length = 95
Score = 140 bits (351), Expect = 8e-033
Identities = 68/90 (75%), Positives = 77/90 (85%)
Frame = +2
Query: 146 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 325
MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL + V D +KYPHMLSV+NC
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 326 FIRGSVVRYVQLPPDGVDVDLLHDAARREA 415
FIRGSVVRYVQLP D VD LL DAAR+EA
Sbjct: 61 FIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
>sp|Q54TF6|LSM2_DICDI Probable U6 snRNA-associated Sm-like protein LSm2
OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1
Length = 117
Score = 129 bits (324), Expect = 1e-029
Identities = 61/91 (67%), Positives = 78/91 (85%)
Frame = +2
Query: 146 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 325
MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NC
Sbjct: 1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNC 60
Query: 326 FIRGSVVRYVQLPPDGVDVDLLHDAARREAR 418
FIRGSVVRYV LP + VDV+ L D +R EAR
Sbjct: 61 FIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces
cerevisiae GN=LSM2 PE=1 SV=1
Length = 95
Score = 119 bits (296), Expect = 2e-026
Identities = 59/89 (66%), Positives = 69/89 (77%)
Frame = +2
Query: 146 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 325
MLFFS+FK LV QEV VELKND+ I+GTL SVDQ+LN+KL+N D+ KYPH+ SVRN
Sbjct: 1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI 60
Query: 326 FIRGSVVRYVQLPPDGVDVDLLHDAARRE 412
FIRGS VRYV L + VD +LL DA RRE
Sbjct: 61 FIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
>sp|O94408|LSM2_SCHPO U6 snRNA-associated Sm-like protein LSm2
OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1
Length = 96
Score = 115 bits (287), Expect = 2e-025
Identities = 57/89 (64%), Positives = 69/89 (77%)
Frame = +2
Query: 146 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 325
MLF+S+FK L+ EVTVELKND++IRG L SVDQ+LN+KLEN VVD KYPHM +V++
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 326 FIRGSVVRYVQLPPDGVDVDLLHDAARRE 412
FIRGSVVRYV + VD LL DA RR+
Sbjct: 61 FIRGSVVRYVHMSSAYVDTILLADACRRD 89
>sp|A9CTE0|LSM2_ENTBH Probable U6 snRNA-associated Sm-like protein LSm2
OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1
Length = 97
Score = 68 bits (165), Expect = 3e-011
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Frame = +2
Query: 146 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLS 313
MLFF YFK + E+ V LKND++I G L +VD +LNIK+EN + +++ + +
Sbjct: 1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITN 60
Query: 314 VRNCFIRGSVVRYVQLPPDGVD 379
++ C IRGS ++ V+L +G++
Sbjct: 61 IQLCSIRGSAIKSVELKKNGLE 82
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 50 bits (118), Expect = 9e-006
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Frame = +2
Query: 146 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENT--RVVDQDKYPHMLSVR 319
ML S + G ++ VELKN G L + D ++NI L+N D DK+ ++
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKF---WKIQ 57
Query: 320 NCFIRGSVVRYVQLPPDGVDV 382
+C+IRG+ ++Y+ +P + +D+
Sbjct: 58 SCYIRGNTIKYISVPDEIIDL 78
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,819,846,109
Number of Sequences: 518415
Number of Extensions: 95819846109
Number of Successful Extensions: 619733697
Number of sequences better than 0.0: 0
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