BLASTX 7.6.2
Query= UN23051 /QuerySize=1175
(1174 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapi... 452 2e-126
sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus muscu... 450 1e-125
sp|Q05B83|RFC2_BOVIN Replication factor C subunit 2 OS=Bos tauru... 450 2e-125
sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norv... 449 3e-125
sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus ga... 448 4e-125
sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=... 406 2e-112
sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosac... 398 5e-110
sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophil... 398 7e-110
sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharom... 393 1e-108
sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Metha... 250 2e-065
sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Metha... 248 5e-065
sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Metha... 248 7e-065
sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Metha... 247 1e-064
sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Metha... 247 2e-064
sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halob... 246 3e-064
sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halob... 246 3e-064
sp|Q8SQM0|RFC4_ENCCU Replication factor C subunit 4 OS=Encephali... 243 2e-063
sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloa... 235 5e-061
sp|O26343|RFCS_METTH Replication factor C small subunit OS=Metha... 230 2e-059
sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Metha... 219 3e-056
>sp|P35250|RFC2_HUMAN Replication factor C subunit 2 OS=Homo sapiens GN=RFC2
PE=1 SV=3
Length = 354
Score = 452 bits (1162), Expect = 2e-126
Identities = 220/322 (68%), Positives = 267/322 (82%)
Frame = +1
Query: 46 ASSSSNSSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGK 225
A S + S G YE+PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I+AGPPGTGK
Sbjct: 23 AFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGK 82
Query: 226 TTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 405
TTSIL LA LLGP ++A+LELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDE
Sbjct: 83 TTSILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDE 142
Query: 406 ADSMTSGAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRL 585
ADSMT GAQQALRRT+EIYS +TRFALACN S KIIEPIQSRCA++R+++L+D IL RL
Sbjct: 143 ADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRL 202
Query: 586 MVVVQAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLH 765
M V++ E VPY +GLEAIIFTA GDMRQALNNLQ+TFSGF F+N ENVFKVCD+PHPL
Sbjct: 203 MNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLL 262
Query: 766 VKNMVRNVLESKFDDACHGMKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 945
VK M+++ + + D+A + L+ LGYSP DII +FR+ K + MAEYLKLEF+KE G+
Sbjct: 263 VKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGY 322
Query: 946 AHMRICDGVGSYLQLCGLLAKL 1011
HM+I +GV S LQ+ GLLA+L
Sbjct: 323 THMKIAEGVNSLLQMAGLLARL 344
>sp|Q9WUK4|RFC2_MOUSE Replication factor C subunit 2 OS=Mus musculus GN=Rfc2
PE=2 SV=1
Length = 349
Score = 450 bits (1156), Expect = 1e-125
Identities = 216/330 (65%), Positives = 268/330 (81%)
Frame = +1
Query: 22 PKSQSVTMASSSSNSSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLIL 201
P S + + G YE+PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I+
Sbjct: 10 PSESGAQEPSPVPSKTAGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVPNIII 69
Query: 202 AGPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGR 381
AGPPGTGKTTSIL LA LLGP ++AVLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GR
Sbjct: 70 AGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGR 129
Query: 382 HKVVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLS 561
HK++ILDEADSMT GAQQALRRT+EIYS +TRFALACN S KIIEPIQSRCA++R+++L+
Sbjct: 130 HKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLT 189
Query: 562 DQDILGRLMVVVQAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKV 741
D +L RLM V++ E VPY +GLEAIIFTA GDMRQALNNLQ+TFSGF ++N ENVFKV
Sbjct: 190 DAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKV 249
Query: 742 CDQPHPLHVKNMVRNVLESKFDDACHGMKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKL 921
CD+PHPL VK M+++ +++ D+A + L+ LGYSP D+I +FR+ K + MAEYLKL
Sbjct: 250 CDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKL 309
Query: 922 EFMKETGFAHMRICDGVGSYLQLCGLLAKL 1011
EF+KE G+ HM++ +GV S LQ+ GLLA+L
Sbjct: 310 EFIKEIGYTHMKVAEGVNSLLQMAGLLARL 339
>sp|Q05B83|RFC2_BOVIN Replication factor C subunit 2 OS=Bos taurus GN=RFC2 PE=2
SV=1
Length = 352
Score = 450 bits (1155), Expect = 2e-125
Identities = 218/328 (66%), Positives = 267/328 (81%)
Frame = +1
Query: 28 SQSVTMASSSSNSSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAG 207
+Q S + S G YE+PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I+AG
Sbjct: 15 AQDAAPGPSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAG 74
Query: 208 PPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK 387
PPGTGKTTSIL LA LLGP ++AVLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK
Sbjct: 75 PPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHK 134
Query: 388 VVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQ 567
++ILDEADSMT GAQQALRRT+EIYS +TRFALACN S KIIEPIQSRCA++R+++L+D
Sbjct: 135 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDM 194
Query: 568 DILGRLMVVVQAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCD 747
IL RL+ V++ E V Y +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD
Sbjct: 195 QILARLLSVIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCD 254
Query: 748 QPHPLHVKNMVRNVLESKFDDACHGMKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEF 927
+PHPL VK M+++ + + D+A + L+ LGYSP DII +FR+ K + MAEYLKLEF
Sbjct: 255 EPHPLLVKEMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEF 314
Query: 928 MKETGFAHMRICDGVGSYLQLCGLLAKL 1011
+KE G+ HM+I +GV S LQ+ GLLA+L
Sbjct: 315 IKEIGYTHMKIAEGVNSLLQMAGLLARL 342
>sp|Q641W4|RFC2_RAT Replication factor C subunit 2 OS=Rattus norvegicus GN=Rfc2
PE=2 SV=1
Length = 349
Score = 449 bits (1153), Expect = 3e-125
Identities = 214/313 (68%), Positives = 264/313 (84%)
Frame = +1
Query: 73 GGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAH 252
G YE+PWVEKYRP K+ +IVGNED VSRL+V AR+GN+PN+I+AGPPGTGKTTSIL LA
Sbjct: 27 GHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLAR 86
Query: 253 ELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQ 432
LLGP ++AVLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT GAQ
Sbjct: 87 ALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQ 146
Query: 433 QALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENV 612
QALRRT+EIYS +TRFALACN S KIIEPIQSRCA++R+++L+D +L RLM V++ E V
Sbjct: 147 QALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKV 206
Query: 613 PYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVL 792
PY +GLEAIIFTA GDMRQALNNLQ+TFSGF ++N ENVFKVCD+PHPL VK M+++ +
Sbjct: 207 PYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMIQHCV 266
Query: 793 ESKFDDACHGMKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGV 972
++ D+A + L+ LGYSP D+I +FR+ K + MAEYLKLEF+KE G+ HM++ +GV
Sbjct: 267 DANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKVAEGV 326
Query: 973 GSYLQLCGLLAKL 1011
S LQ+ GLLA+L
Sbjct: 327 NSLLQMAGLLARL 339
>sp|P53033|RFC2_CHICK Replication factor C subunit 2 OS=Gallus gallus GN=RFC2
PE=2 SV=1
Length = 359
Score = 448 bits (1152), Expect = 4e-125
Identities = 213/319 (66%), Positives = 267/319 (83%)
Frame = +1
Query: 55 SSNSSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTS 234
S+ ++ G YE+PWVEKYRP K+ ++VGNED VSRL+V A++GN+PN+I+AGPPGTGKTTS
Sbjct: 31 SAPAASGHYELPWVEKYRPLKLCEVVGNEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTS 90
Query: 235 ILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADS 414
IL LA LLGP ++AVLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADS
Sbjct: 91 ILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADS 150
Query: 415 MTSGAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVV 594
MT GAQQALRRT+EIYS +TRFALACN S KIIEPIQSRCA++R+++L+D IL RL+ +
Sbjct: 151 MTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKI 210
Query: 595 VQAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKN 774
V+ E+VPY +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N ENVFKVCD+PHPL VK
Sbjct: 211 VEKEDVPYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVKE 270
Query: 775 MVRNVLESKFDDACHGMKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHM 954
M+++ + + D+A + L+ LGYSP D+I +FR+ K + M EYLKLEF+KE G+ HM
Sbjct: 271 MIQHCINANIDEAYKILAHLWRLGYSPEDVIGNIFRVCKTFQMPEYLKLEFIKEIGYTHM 330
Query: 955 RICDGVGSYLQLCGLLAKL 1011
+I +GV S LQ+ GLLA+L
Sbjct: 331 KIAEGVNSLLQMAGLLARL 349
>sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=Dictyostelium
discoideum GN=rfc2 PE=3 SV=1
Length = 338
Score = 406 bits (1043), Expect = 2e-112
Identities = 207/330 (62%), Positives = 257/330 (77%), Gaps = 1/330 (0%)
Frame = +1
Query: 34 SVTMASSSSNSSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPP 213
+ T ++++N++ +PWVEKYRP + DIVGNE+ VSRL+ I++DGN+PN+I++GPP
Sbjct: 3 TTTTTTTNTNTTNLDPLLPWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPP 62
Query: 214 GTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVV 393
GTGKT+SIL LA LLG NY+EAV ELNASDDR +DVVR+KIK FA KKVTLP GRHK++
Sbjct: 63 GTGKTSSILCLARALLGANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVTLPAGRHKII 122
Query: 394 ILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDI 573
ILDE DSMTSGAQQALRR +EIYS +TRFA ACN S KIIEPIQSRCA++RF+RLSD I
Sbjct: 123 ILDEVDSMTSGAQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQI 182
Query: 574 LGRLMVVVQAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQP 753
L RL VVQ E VPY +GL AIIFTA+GDMRQALNNLQAT SGF +N ENV KVCDQP
Sbjct: 183 LTRLREVVQIEKVPYTDDGLAAIIFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQP 242
Query: 754 HPLHVKNMVRNVLESKFDDACHGMKQLYDLGYSPTDIITTLFRIIK-NYDMAEYLKLEFM 930
HPL +K ++ +S F +A +K+L+D GYS DII+ LF I K + ++ EY KLEF+
Sbjct: 243 HPLIIKQIIALCAKSDFKEAYPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFL 302
Query: 931 KETGFAHMRICDGVGSYLQLCGLLAKLAVV 1020
KE GF ++R GV + +QL GLL+KL +V
Sbjct: 303 KEIGFCNLRATTGVNTLVQLTGLLSKLCLV 332
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces
pombe GN=rfc4 PE=1 SV=1
Length = 342
Score = 398 bits (1021), Expect = 5e-110
Identities = 196/330 (59%), Positives = 255/330 (77%), Gaps = 1/330 (0%)
Frame = +1
Query: 28 SQSVTMASSSSNSSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAG 207
S +V+ + ++ YE+PWVEKYRP + DIVGNE+ + RL+VIA++GNMP+L+++G
Sbjct: 2 SNAVSSSVFGEKNNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISG 61
Query: 208 PPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK 387
PG GKTTSIL LAH LLGP Y+E VLELNASD+RGIDVVRN+IK FAQKKV LPPGRHK
Sbjct: 62 MPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVILPPGRHK 121
Query: 388 VVILDEADSMTSGAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQ 567
++ILDEADSMT+GAQQALRRT+EIYSN+TRFALACN S KIIEPIQSRCA++R+SRL+DQ
Sbjct: 122 IIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQ 181
Query: 568 DILGRLMVVVQAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCD 747
+L RL+ + +AE V Y +GL A+I TA+GDMRQA+NNLQ+T +GF VN ENVF+V D
Sbjct: 182 QVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVAD 241
Query: 748 QPHPLHVKNMVRNVLESKFDDACHGMKQLYDLGYSPTDIITTLFRIIKNYD-MAEYLKLE 924
QP P+ + M+ D A ++ ++DLG+S DI+T +FR++K D + E+ +LE
Sbjct: 242 QPSPVAIHAMLTACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRVVKTMDSIPEFSRLE 301
Query: 925 FMKETGFAHMRICDGVGSYLQLCGLLAKLA 1014
+KE G HM I +GV + LQL GL+ +LA
Sbjct: 302 MLKEIGQTHMIILEGVQTLLQLSGLVCRLA 331
>sp|P53034|RFC2_DROME Replication factor C subunit 2 OS=Drosophila melanogaster
GN=RfC4 PE=1 SV=1
Length = 331
Score = 398 bits (1020), Expect = 7e-110
Identities = 195/314 (62%), Positives = 244/314 (77%)
Frame = +1
Query: 85 IPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLG 264
+PW+EKYRP K +IVGNED V+RL V A GN PN+I+AGPPG GKTT+I LA LLG
Sbjct: 16 LPWIEKYRPVKFKEIVGNEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARILLG 75
Query: 265 PNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALR 444
+Y+EAVLELNAS++RGIDVVRNKIKMFAQ+KVTLP GRHK+VILDEADSMT GAQQALR
Sbjct: 76 DSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLPRGRHKIVILDEADSMTEGAQQALR 135
Query: 445 RTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVP 624
RT+EIYS++TRFALACNTS KIIEPIQSRCA++RF++LSD +L +L+ V + E + Y
Sbjct: 136 RTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTE 195
Query: 625 EGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKF 804
+GLEAI+FTA GDMRQ LNNLQ+T GF + ENVFKVCD+PHP ++ M+ + +
Sbjct: 196 DGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCDEPHPKLLEEMIHHCAANDI 255
Query: 805 DDACHGMKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYL 984
A + +L+ LGYSP DII +FR+ K ++ E+LKL+F++E G HM+I DG+ S L
Sbjct: 256 HKAYKILAKLWKLGYSPEDIIANIFRVCKRINIDEHLKLDFIREIGITHMKIIDGINSLL 315
Query: 985 QLCGLLAKLAVVRE 1026
QL LLAKL + E
Sbjct: 316 QLTALLAKLCIAAE 329
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae
GN=RFC4 PE=1 SV=1
Length = 323
Score = 393 bits (1009), Expect = 1e-108
Identities = 194/312 (62%), Positives = 250/312 (80%), Gaps = 5/312 (1%)
Frame = +1
Query: 82 EIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELL 261
++PWVEKYRP + DIVGN++ + RLQ IA+DGNMP++I++G PG GKTTS+ LAHELL
Sbjct: 8 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67
Query: 262 GPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQAL 441
G +Y + VLELNASDDRGIDVVRN+IK FAQKK+ LPPG+HK+VILDEADSMT+GAQQAL
Sbjct: 68 GRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQAL 127
Query: 442 RRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYV 621
RRT+E+YSNSTRFA ACN S KIIEP+QSRCA++R+S+LSD+D+L RL+ +++ E+V Y
Sbjct: 128 RRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYT 187
Query: 622 PEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESK 801
+GLEAIIFTA+GDMRQA+NNLQ+T +G VN +NVFK+ D PHPL VK M +L S
Sbjct: 188 NDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKM---LLASN 244
Query: 802 FDDACHGMK-QLYDLGYSPTDIITTLFRIIKNY-DMAEYLKLEFMKETGFAHMRICDGVG 975
+D+ ++ L+ GYS DI+TT FR+ KN + E ++LE +KE G HMRI +GVG
Sbjct: 245 LEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVG 304
Query: 976 SYLQLCGLLAKL 1011
+YLQL +LAK+
Sbjct: 305 TYLQLASMLAKI 316
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 250 bits (636), Expect = 2e-065
Identities = 135/315 (42%), Positives = 198/315 (62%), Gaps = 8/315 (2%)
Frame = +1
Query: 88 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 267
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 268 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRR 447
+RE LELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++TS AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 448 TIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVPE 627
T+E YS+ RF L+CN KII PIQSRCA+ RFS L +D++ L + + EN+
Sbjct: 123 TMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKENLTLEKG 182
Query: 628 GLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKFD 807
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M + L KF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 808 DACHGMKQLYDL----GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 975
++ +QLY+L G S DI+ +FR + N D++E K+ ++ G RI +G
Sbjct: 243 ES---REQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLVEAIGECDFRIVEGSN 299
Query: 976 SYLQLCGLLAKLAVV 1020
+QL LLAK+ ++
Sbjct: 300 ERIQLSALLAKMGIL 314
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus
maripaludis GN=rfcS PE=3 SV=1
Length = 315
Score = 248 bits (633), Expect = 5e-065
Identities = 135/315 (42%), Positives = 198/315 (62%), Gaps = 8/315 (2%)
Frame = +1
Query: 88 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 267
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 268 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRR 447
+RE LELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++TS AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 448 TIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVPE 627
T+E YS+ RF L+CN KII PIQSRCA+ RFS L +D++ L + + EN+
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKG 182
Query: 628 GLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKFD 807
G++AII+ ++GDMR+A+N LQ + + +E V+KV + P +K M + L KF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 808 DACHGMKQLYDL----GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 975
+A +QLY+L G S DI+ +FR + N D++E K+ ++ G RI +G
Sbjct: 243 EA---REQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSN 299
Query: 976 SYLQLCGLLAKLAVV 1020
+QL LLAK+ ++
Sbjct: 300 ERIQLSALLAKMGIL 314
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 248 bits (632), Expect = 7e-065
Identities = 129/312 (41%), Positives = 197/312 (63%), Gaps = 2/312 (0%)
Frame = +1
Query: 88 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 267
PWVEKYRP + ++VG+++ + RL+ +MP+L+ +G PG GKTT+ L LA +L G
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 268 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRR 447
++E LELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++TS AQ ALRR
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 448 TIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVPE 627
T+E YS+ RF L+CN KII PIQSRCA+ RFS L +D++ L + + E++
Sbjct: 123 TMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKESINVEKS 182
Query: 628 GLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKFD 807
G++AII+ ++GDMR+A+N LQ + + +N+ ++KV + P +K M L KF
Sbjct: 183 GMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKARPDEIKKMTELALNGKFV 242
Query: 808 DACHGM-KQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYL 984
+A + K + D G S DII +FR + N +++E K+ ++ G RI +G +
Sbjct: 243 EAREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGECDFRIVEGANERI 302
Query: 985 QLCGLLAKLAVV 1020
QL LLAK+ ++
Sbjct: 303 QLSALLAKMGIL 314
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 247 bits (630), Expect = 1e-064
Identities = 135/315 (42%), Positives = 197/315 (62%), Gaps = 8/315 (2%)
Frame = +1
Query: 88 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 267
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 268 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRR 447
+RE LELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++TS AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 448 TIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVPE 627
T+E YS+ RF L+CN KII PIQSRCA+ RFS L +D++ L + + E +
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKG 182
Query: 628 GLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKFD 807
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M + L KF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTQLALNGKFV 242
Query: 808 DACHGMKQLYDL----GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 975
+A +QLY+L G S DI+ +FR + N D++E K+ ++ G RI +G
Sbjct: 243 EA---REQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSN 299
Query: 976 SYLQLCGLLAKLAVV 1020
+QL LLAK+ ++
Sbjct: 300 ERIQLSALLAKMGIL 314
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 247 bits (629), Expect = 2e-064
Identities = 135/315 (42%), Positives = 196/315 (62%), Gaps = 8/315 (2%)
Frame = +1
Query: 88 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 267
PWVEKYRP + ++VG+ + + RL +MP+L+ +G PG GKTT+ LALA +L G
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 268 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRR 447
+RE LELN+SD+RGIDV+R K+K FA+ K + KV+ LDE+D++TS AQ ALRR
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTK-PIGDAPFKVIFLDESDALTSDAQNALRR 122
Query: 448 TIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVPE 627
T+E YS+ RF L+CN KII PIQSRCA+ RFS L +D++ L + + E +
Sbjct: 123 TMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKETLTLEKG 182
Query: 628 GLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKFD 807
G++AII+ ++GDMR+A+N LQ + V +E V+KV + P +K M L KF
Sbjct: 183 GIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARPDEIKKMTHLALNGKFV 242
Query: 808 DACHGMKQLYDL----GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVG 975
+A +QLY+L G S DI+ +FR + N D++E K+ ++ G RI +G
Sbjct: 243 EA---KEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLVEAIGECDFRIVEGSN 299
Query: 976 SYLQLCGLLAKLAVV 1020
+QL LLAK+ ++
Sbjct: 300 ERIQLSALLAKMGIL 314
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 246 bits (627), Expect = 3e-064
Identities = 134/322 (41%), Positives = 201/322 (62%), Gaps = 4/322 (1%)
Frame = +1
Query: 64 SSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILA 243
++GG EI WVEKYRP ++ D+VG+ D RLQ ++P+L+ AGP GTGKT S ++
Sbjct: 4 AAGGRQEI-WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVS 62
Query: 244 LAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTS 423
+A EL G ++++ LELNASD+RGIDVVR++IK FA+ + ++V+ LDEAD++T
Sbjct: 63 IAKELYGDDWQDNFLELNASDERGIDVVRDRIKDFARS--SFGGHNYRVIFLDEADALTD 120
Query: 424 GAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQA 603
AQ ALRRT+E +SN+TRF L+CN S KII+PIQSRCA+ RF++L D + L + +
Sbjct: 121 DAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAET 180
Query: 604 ENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVR 783
E + + +G++A+++ ADGDMR+A+N LQA + VN+E V+ + P ++ MV
Sbjct: 181 EGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVT 240
Query: 784 NVLESKFDDACHGMKQLY-DLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRI 960
L F A + L + G + DII + R + +D+ E + + G A RI
Sbjct: 241 EALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRI 300
Query: 961 CDGVGSYLQLCGLLAKLAVVRE 1026
+G +QL LLA +A+ E
Sbjct: 301 AEGANERVQLEALLASVALNAE 322
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium
salinarium GN=rfcS PE=3 SV=1
Length = 322
Score = 246 bits (627), Expect = 3e-064
Identities = 134/322 (41%), Positives = 201/322 (62%), Gaps = 4/322 (1%)
Frame = +1
Query: 64 SSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILA 243
++GG EI WVEKYRP ++ D+VG+ D RLQ ++P+L+ AGP GTGKT S ++
Sbjct: 4 AAGGRQEI-WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVS 62
Query: 244 LAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTS 423
+A EL G ++++ LELNASD+RGIDVVR++IK FA+ + ++V+ LDEAD++T
Sbjct: 63 IAKELYGDDWQDNFLELNASDERGIDVVRDRIKDFARS--SFGGHNYRVIFLDEADALTD 120
Query: 424 GAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQA 603
AQ ALRRT+E +SN+TRF L+CN S KII+PIQSRCA+ RF++L D + L + +
Sbjct: 121 DAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAET 180
Query: 604 ENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVR 783
E + + +G++A+++ ADGDMR+A+N LQA + VN+E V+ + P ++ MV
Sbjct: 181 EGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARPEEIETMVT 240
Query: 784 NVLESKFDDACHGMKQLY-DLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRI 960
L F A + L + G + DII + R + +D+ E + + G A RI
Sbjct: 241 EALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWEFDVEEAAAVRLLDRLGEADYRI 300
Query: 961 CDGVGSYLQLCGLLAKLAVVRE 1026
+G +QL LLA +A+ E
Sbjct: 301 AEGANERVQLEALLASVALNAE 322
>sp|Q8SQM0|RFC4_ENCCU Replication factor C subunit 4 OS=Encephalitozoon cuniculi
GN=RFC4 PE=1 SV=1
Length = 309
Score = 243 bits (620), Expect = 2e-063
Identities = 130/302 (43%), Positives = 191/302 (63%), Gaps = 9/302 (2%)
Frame = +1
Query: 94 VEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGPNY 273
V KY+PS++ DIVGNE + + ++ +MP+L+ GPPGTGKTT LA LLG
Sbjct: 5 VNKYQPSEIQDIVGNEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRLLG--N 62
Query: 274 REAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTI 453
+E +LELNASD+RGID VR IK FAQ++V K++ILDEADSMT+ AQQA+RR +
Sbjct: 63 KEGLLELNASDERGIDTVRTTIKSFAQRRV--KDCEFKIIILDEADSMTTTAQQAMRRVM 120
Query: 454 EIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVPEGL 633
EI+S+ RF L CN KI EPIQSRCA++RF R+ IL RL + + E + E L
Sbjct: 121 EIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEAL 180
Query: 634 EAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKFDDA 813
+ ++ +DGDMRQ+LN LQA + V+Q+ + K+ P P ++ +++ +L+ + ++A
Sbjct: 181 DLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLLKREVEEA 240
Query: 814 CHGMKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLC 993
++++ + P D+I + FR KN + E LK+ G A++RI +GV S LQ
Sbjct: 241 LEMFDEIWEEKFDPLDLINSFFRAAKNMESYELLKV-----IGLANLRISEGVNSRLQFY 295
Query: 994 GL 999
G+
Sbjct: 296 GM 297
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula
marismortui GN=rfcS PE=3 SV=2
Length = 325
Score = 235 bits (599), Expect = 5e-061
Identities = 126/321 (39%), Positives = 197/321 (61%), Gaps = 3/321 (0%)
Frame = +1
Query: 55 SSNSSGGGYEIPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTS 234
+ + S G E W+EKYRP + D++G+E+ V RL+ ++ +++ +GP GTGKTT
Sbjct: 4 AESESRAGREEVWIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTC 63
Query: 235 ILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADS 414
A+A EL G ++RE LELNASD+RGIDVVR++IK FA + + ++++ LDEAD+
Sbjct: 64 ATAIARELYGDDWREHFLELNASDERGIDVVRDRIKNFA--RTSFGGVEYRIIFLDEADA 121
Query: 415 MTSGAQQALRRTIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVV 594
+TS AQ ALRRT+E +SN+ RF L+CN S +II+PIQSRCA+ RFS L+D + + +
Sbjct: 122 LTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTI 181
Query: 595 VQAENVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKN 774
E++ +GL+A+++ ADGDMR+A+N LQA V++ V+ + P ++
Sbjct: 182 AAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRT 241
Query: 775 MVRNVLESKFDDACHGMKQLY-DLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 951
MV++ L+ F + + +L + G + DII L R I +D+ + + ++ G
Sbjct: 242 MVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETD 301
Query: 952 MRICDGVGSYLQLCGLLAKLA 1014
RI G +QL +LA LA
Sbjct: 302 YRITRGANERVQLEAMLASLA 322
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanobacterium
thermoautotrophicum GN=rfcS PE=1 SV=1
Length = 321
Score = 230 bits (586), Expect = 2e-059
Identities = 127/312 (40%), Positives = 188/312 (60%), Gaps = 7/312 (2%)
Frame = +1
Query: 88 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 267
PWVEKYRP K+ DIVG E + RL+ + +MPNL+ GP G GKTT+ LALA E+LG
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGE 66
Query: 268 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRR 447
+R+ LELNASD RGID VR IK F + K P R ++ LDE D+MT AQ ALRR
Sbjct: 67 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRR 124
Query: 448 TIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVPE 627
+E+Y+ ++ F L+CN S KII+PIQSRCA+ RF L I+ RL + + EN+ Y
Sbjct: 125 EMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEYEAH 184
Query: 628 GLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKFD 807
LE I++ A+GD+R+A+N LQ+ S + + +++ V + P V+ M++ +L+ KF
Sbjct: 185 ALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILDGKFM 244
Query: 808 DACHGMKQLYDL-GYSPTDIITTLFRIIKNYDMAEYLK----LEFMKETGFAHMRICDGV 972
+A ++++ L G S D++T +++ + M + + + G RI +G
Sbjct: 245 EARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDFRIREGA 304
Query: 973 GSYLQLCGLLAK 1008
+QL LLA+
Sbjct: 305 NPRIQLEALLAR 316
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 219 bits (557), Expect = 3e-056
Identities = 123/312 (39%), Positives = 184/312 (58%), Gaps = 7/312 (2%)
Frame = +1
Query: 88 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHELLGP 267
PWVEKYRP + DI+G + V+RLQ + +MPNL+ GP G GKTT+ +AL +LG
Sbjct: 4 PWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGE 63
Query: 268 NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRR 447
+R+ LELNASD RGID VRN IK F + K P R ++ LDE D+MT AQ ALRR
Sbjct: 64 YWRQNFLELNASDARGIDTVRNDIKNFCRLKPVGAPFR--IIFLDEVDNMTKDAQHALRR 121
Query: 448 TIEIYSNSTRFALACNTSGKIIEPIQSRCALVRFSRLSDQDILGRLMVVVQAENVPYVPE 627
+E+Y+ + F L+CN S KII+PIQSRCA+ RF + ++I RL + +E Y
Sbjct: 122 EMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSERFEYTDG 181
Query: 628 GLEAIIFTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRNVLESKFD 807
G+EAI + A+GDMR+A+N LQA S + V+++ V++V + P V N++ L F
Sbjct: 182 GIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKPQDVHNLITKALSGDFM 241
Query: 808 DACHGMKQLYDL-GYSPTDIITTLFRIIKNY----DMAEYLKLEFMKETGFAHMRICDGV 972
A + +++ L G S D+++ +++ + M + ++ ++ RI +G
Sbjct: 242 GARNLLRETMVLQGTSGEDMVSQIYQDVSKRVFEGKMEADIYIDLIEAIADCDFRIREGA 301
Query: 973 GSYLQLCGLLAK 1008
+QL LL +
Sbjct: 302 NPRIQLEALLTQ 313
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,819,846,109
Number of Sequences: 518415
Number of Extensions: 95819846109
Number of Successful Extensions: 619733697
Number of sequences better than 0.0: 0
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