BLASTX 7.6.2
Query= UN23181 /QuerySize=2567
(2566 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1... 163 6e-039
sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1... 160 7e-038
sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator ... 157 4e-037
sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.0... 157 4e-037
sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1... 151 2e-035
sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapie... 109 2e-022
sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus muscul... 109 2e-022
sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norve... 109 2e-022
sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=... 101 3e-020
sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae GN... 95 3e-018
sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabd... 92 2e-017
sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=r... 69 1e-010
sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropical... 69 2e-010
sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RB... 69 2e-010
sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=... 69 2e-010
sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=... 69 2e-010
sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus ... 69 2e-010
sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis G... 67 8e-010
sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitocho... 61 4e-008
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus
musculus GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 163 bits (412), Expect = 6e-039
Identities = 92/189 (48%), Positives = 126/189 (66%), Gaps = 11/189 (5%)
Frame = +3
Query: 57 TLWIGDLQYWVDENYLSSCFSQTGELV-SVKVIRNKITGQPEGYGFIEFVSHAAAERTLQ 233
+LW+GDL+ ++DEN++S F+ GE V SVK+IRN++TG P GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 234 TYNGTLMPGTEVA--FRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLHETFRVHYS 407
NG +PG A F+LN+A++ G++ D P++S+FVGDL PDV D +L+E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATY--GKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 408 SVRGAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNG-LYCSTRPMRISVATPR---- 572
S RG KVV DP TG SKGYGFVKF DE E+ +A++E G + +P+R+SVA P+
Sbjct: 122 SCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASRV 180
Query: 573 KNVGVQQQY 599
K V Q Y
Sbjct: 181 KPVEYSQMY 189
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo
abelii GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 160 bits (403), Expect = 7e-038
Identities = 90/189 (47%), Positives = 125/189 (66%), Gaps = 11/189 (5%)
Frame = +3
Query: 57 TLWIGDLQYWVDENYLSSCFSQTGELV-SVKVIRNKITGQPEGYGFIEFVSHAAAERTLQ 233
+LW+GDL+ ++DEN++S F+ GE V SVK+IRN++TG P GY F+EF A AE+ L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 234 TYNGTLMPGTEVA--FRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLHETFRVHYS 407
NG +PG A F+LN+ ++ G++ D P++S+FVGDL PDV D +L+E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTY--GKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYP 121
Query: 408 SVRGAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNG-LYCSTRPMRISVATPR---- 572
S RG KVV D TG SKGYGFVKF DE E+ +A++E G + ++P+R+SVA P+
Sbjct: 122 SCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV 180
Query: 573 KNVGVQQQY 599
K V Q Y
Sbjct: 181 KPVEYSQMY 189
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1
Length = 632
Score = 157 bits (396), Expect = 4e-037
Identities = 80/182 (43%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Frame = +3
Query: 57 TLWIGDLQYWVDENYLSSCFSQTGELVSVKVIRNKITGQPE--GYGFIEFVSHAAAERTL 230
TLW+GDL+ W+D ++ ++ E V+VKV+R+K + Y F++F S AAAER L
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 231 QTYNGTLMPGTEVAFRLNWASFGSGQK---VDAGPDHSIFVGDLAPDVTDYLLHETFRVH 401
YN T++PG F+LNWA+ G Q V P+ SIFVGDL P D L TFR
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 402 YSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNGLYCSTRPMRISVATPRKNV 581
Y S AK++ DP TG S+ YGFV+F+ E E+ A+ M G C RP+RISVA+P+
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRA 265
Query: 582 GV 587
+
Sbjct: 266 SI 267
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 157 bits (396), Expect = 4e-037
Identities = 75/191 (39%), Positives = 118/191 (61%), Gaps = 3/191 (1%)
Frame = +3
Query: 21 GYHHPQTLEEVRTLWIGDLQYWVDENYLSSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 200
G + + + TLW+G+L+ WV E ++ ++ G+ V VK+IRN+ TG GY F+EF
Sbjct: 82 GSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEF 141
Query: 201 VSHAAAERTLQTYNGTLMPGTEVAFRLNWASFGS--GQKVDAGPDHSIFVGDLAPDVTDY 374
S A + + N +PGT F+LNWAS G + + ++SIFVGDL+P+V ++
Sbjct: 142 ASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEF 200
Query: 375 LLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNGLYCSTRPMRI 554
++ F Y+S + AK++TDP T S+GYGFV+F DE+++ A++EM G C RP+R+
Sbjct: 201 DVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRV 260
Query: 555 SVATPRKNVGV 587
+ATP+ V
Sbjct: 261 GLATPKSKAHV 271
Score = 76 bits (185), Expect = 1e-012
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +1
Query: 697 DITCTTVLIANLDPNVTEEELKKAFSSLGEVIYVNIPATKGYGYVQFKTRPCAEEAIQKM 876
D +TV + L V+EEELK F + GE++YV IP KG G+VQF R AE AI ++
Sbjct: 299 DTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQL 358
Query: 877 QGHVIGQQPVRISWSKN 927
QG+ +G +R+SW +N
Sbjct: 359 QGYPLGNSRIRLSWGRN 375
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio
rerio GN=trnau1apl PE=2 SV=1
Length = 316
Score = 151 bits (381), Expect = 2e-035
Identities = 79/178 (44%), Positives = 117/178 (65%), Gaps = 7/178 (3%)
Frame = +3
Query: 57 TLWIGDLQYWVDENYLSSCFSQTGELV-SVKVIRNKITGQPEGYGFIEFVSHAAAERTLQ 233
+LW+GDL ++DEN++ FS GE VK+I +++TG GY F+E A+ +R +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 234 TYNGTLMPGTEV--AFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLHETFRVHYS 407
NG L+PG+ F+LN+A++ G++ + GP+ S+FVGDL +V DY LH+ F +
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATY--GKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFP 124
Query: 408 SVRGAKVVTDPSTGRSKGYGFVKFADESERNKAMSE-MNGLYCSTRPMRISVATPRKN 578
S +GAKVVTDP G S+GYGFVKF+DE+E+ KA+ E N +P+RIS+A + N
Sbjct: 125 SCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGN 181
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4
PE=1 SV=1
Length = 424
Score = 109 bits (270), Expect = 2e-022
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Frame = +3
Query: 57 TLWIGDLQYWVDENYLSSCFSQTGELVSVKVIRNKITGQPEGYGFIEFVSHAAAERTLQT 236
T+++G L V E L F Q G +V+ + ++++TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 237 YNGTLMPGTEVAFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLHETFRVHYSSVR 416
N + G + R+N AS + +D G +IF+G+L P++ + LL++TF ++
Sbjct: 74 MNMIKLYGKPI--RVNKAS-AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 417 GAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNGLYCSTRPMRISVATPRKNVGVQQQ 596
K++ DP TG SKGY F+ FA + A+ MNG Y RP+ +S A + + G +
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHG 188
Query: 597 YVTKAAYPVPAPVQSA 644
+ P+ A
Sbjct: 189 SAAERLLAAQNPLSQA 204
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 109 bits (270), Expect = 2e-022
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Frame = +3
Query: 57 TLWIGDLQYWVDENYLSSCFSQTGELVSVKVIRNKITGQPEGYGFIEFVSHAAAERTLQT 236
T+++G L V E L F Q G +V+ + ++++TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 237 YNGTLMPGTEVAFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLHETFRVHYSSVR 416
N + G + R+N AS + +D G +IF+G+L P++ + LL++TF ++
Sbjct: 74 MNMIKLYGKPI--RVNKAS-AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 417 GAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNGLYCSTRPMRISVATPRKNVGVQQQ 596
K++ DP TG SKGY F+ FA + A+ MNG Y RP+ +S A + + G +
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHG 188
Query: 597 YVTKAAYPVPAPVQSA 644
+ P+ A
Sbjct: 189 SAAERLLAAQNPLSQA 204
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 109 bits (270), Expect = 2e-022
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Frame = +3
Query: 57 TLWIGDLQYWVDENYLSSCFSQTGELVSVKVIRNKITGQPEGYGFIEFVSHAAAERTLQT 236
T+++G L V E L F Q G +V+ + ++++TGQ +GYGF+EF+S A+ ++
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 237 YNGTLMPGTEVAFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLHETFRVHYSSVR 416
N + G + R+N AS + +D G +IF+G+L P++ + LL++TF ++
Sbjct: 74 MNMIKLYGKPI--RVNKAS-AHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQ 128
Query: 417 GAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNGLYCSTRPMRISVATPRKNVGVQQQ 596
K++ DP TG SKGY F+ FA + A+ MNG Y RP+ +S A + + G +
Sbjct: 129 TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHG 188
Query: 597 YVTKAAYPVPAPVQSA 644
+ P+ A
Sbjct: 189 SAAERLLAAQNPLSQA 204
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces
cerevisiae GN=NGR1 PE=1 SV=2
Length = 672
Score = 101 bits (251), Expect = 3e-020
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Frame = +3
Query: 234 TYNGTLMPGTEVAFRLNWASFGSGQ-KVDAGPDHSIFVGDLAPDVTDYLLHETFRVHYSS 410
T N P + FRLNWAS + Q + + P+ S+FVGDL+P T+ L F+ + S
Sbjct: 159 TTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKS 218
Query: 411 VRGAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNGLYCSTRPMRISVATPRKNVGVQ 590
V+ +V+TDP TG S+ +GFV+F DE ER +A+ EM+G + R +R++ ATPR N+ +Q
Sbjct: 219 VKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQ 278
Query: 591 QQ 596
Q
Sbjct: 279 LQ 280
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1
SV=2
Length = 523
Score = 95 bits (234), Expect = 3e-018
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 14/150 (9%)
Frame = +3
Query: 177 EGYGFIEFVSHAAAERTLQTYNGTLMPG-TEVAFRLNWA------SFGSGQKVDAGPDHS 335
+GY F++F S A L NG L+P +LNWA S S V +G + S
Sbjct: 106 QGYCFVDFPSSTHAANAL-LKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCS 164
Query: 336 IFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKAMSE 515
IFVGDLAP+VT+ L E F Y+S AK+V D TG SKGYGFVKF + E+ A+SE
Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224
Query: 516 MNGLYCSTRPMRISVATPRKNVGVQQQYVT 605
M G++ + R +++ + QQQ+V+
Sbjct: 225 MQGVFLNGRAIKVGPTSG------QQQHVS 248
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans
GN=sap-49 PE=1 SV=2
Length = 388
Score = 92 bits (226), Expect = 2e-017
Identities = 54/176 (30%), Positives = 96/176 (54%), Gaps = 5/176 (2%)
Frame = +3
Query: 57 TLWIGDLQYWVDENYLSSCFSQTGELVSVKVIRNKITGQPEGYGFIEFVSHAAAERTLQT 236
T+++G L V E+ L Q G +VSV + ++++T +G+GF+EF+ A+ ++
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73
Query: 237 YNGTLMPGTEVAFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLHETFRVHYSSVR 416
N + G + ++N AS + +D G +IFVG+L P+V + LL++TF ++
Sbjct: 74 LNMIKLYGKPI--KVNKAS-AHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQ 128
Query: 417 GAKVVTDPSTGRSKGYGFVKFADESERNKAMSEMNGLYCSTRPMRISVATPRKNVG 584
K++ D +G SKG+ F+ FA + A+ MNG + R + +S A R + G
Sbjct: 129 VPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKG 184
>sp|Q6DRG1|RBM42_DANRE RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2
Length = 402
Score = 69 bits (168), Expect = 1e-010
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 327 DHSIFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKA 506
D IF GDL +V D +L F Y S AKVV D TG++KGYGFV F D ++ +A
Sbjct: 302 DFRIFCGDLGNEVNDDILARAFS-RYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRA 360
Query: 507 MSEMNGLYCSTRPMRI 554
M EMNG Y +RP+++
Sbjct: 361 MREMNGRYVGSRPIKL 376
>sp|Q66KL9|RBM42_XENTR RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42
PE=2 SV=1
Length = 392
Score = 69 bits (167), Expect = 2e-010
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 327 DHSIFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKA 506
D IF GDL +V D +L F Y S AKV+ D TG++KGYGFV F D ++ +A
Sbjct: 292 DFRIFCGDLGNEVNDDILARAFS-RYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 507 MSEMNGLYCSTRPMRI 554
M EMNG Y +RP+++
Sbjct: 351 MREMNGKYVGSRPIKL 366
>sp|Q0P5L0|RBM42_BOVIN RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1
Length = 448
Score = 69 bits (166), Expect = 2e-010
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 327 DHSIFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKA 506
D IF GDL +V D +L F + S AKV+ D TG++KGYGFV F D S+ +A
Sbjct: 348 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 406
Query: 507 MSEMNGLYCSTRPMRI 554
M EMNG Y +RP+++
Sbjct: 407 MREMNGKYVGSRPIKL 422
>sp|Q9BTD8|RBM42_HUMAN RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1
SV=1
Length = 480
Score = 69 bits (166), Expect = 2e-010
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 327 DHSIFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKA 506
D IF GDL +V D +L F + S AKV+ D TG++KGYGFV F D S+ +A
Sbjct: 380 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
Query: 507 MSEMNGLYCSTRPMRI 554
M EMNG Y +RP+++
Sbjct: 439 MREMNGKYVGSRPIKL 454
>sp|Q91V81|RBM42_MOUSE RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1
SV=1
Length = 474
Score = 69 bits (166), Expect = 2e-010
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 327 DHSIFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKA 506
D IF GDL +V D +L F + S AKV+ D TG++KGYGFV F D S+ +A
Sbjct: 374 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 507 MSEMNGLYCSTRPMRI 554
M EMNG Y +RP+++
Sbjct: 433 MREMNGKYVGSRPIKL 448
>sp|Q6AXT7|RBM42_RAT RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1
SV=1
Length = 474
Score = 69 bits (166), Expect = 2e-010
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Frame = +3
Query: 327 DHSIFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKA 506
D IF GDL +V D +L F + S AKV+ D TG++KGYGFV F D S+ +A
Sbjct: 374 DFRIFCGDLGNEVNDDILARAFS-RFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 432
Query: 507 MSEMNGLYCSTRPMRI 554
M EMNG Y +RP+++
Sbjct: 433 MREMNGKYVGSRPIKL 448
>sp|A2VDB3|RBM42_XENLA RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2
SV=1
Length = 392
Score = 67 bits (161), Expect = 8e-010
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 327 DHSIFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKA 506
D IF GDL +V D +L F Y S AKV+ D TG++KGYGFV F D ++ +A
Sbjct: 292 DFRIFCGDLGNEVNDDILARAFS-RYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRA 350
Query: 507 MSEMNGLYCSTRPMRI 554
EMNG Y +RP+++
Sbjct: 351 TREMNGKYVGSRPIKL 366
>sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial
OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1
Length = 158
Score = 61 bits (146), Expect = 4e-008
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +3
Query: 336 IFVGDLAPDVTDYLLHETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFADESERNKAMSE 515
+F+G L+ D L + F H+ V AKV+ D TGRS+G+GFV F DE A+SE
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 516 MNGLYCSTRPMRISVATPR 572
M+G + R +R++ A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,819,846,109
Number of Sequences: 518415
Number of Extensions: 95819846109
Number of Successful Extensions: 619733697
Number of sequences better than 0.0: 0
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