BLASTX 7.6.2
Query= UN23209 /QuerySize=941
(940 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G07090.1 | Symbols: | 40S ribosomal protein S... 307 6e-084
TAIR9_protein||AT5G07090.2 | Symbols: | 40S ribosomal protein S... 307 6e-084
TAIR9_protein||AT5G58420.1 | Symbols: | 40S ribosomal protein S... 305 3e-083
TAIR9_protein||AT2G17360.1 | Symbols: | 40S ribosomal protein S... 304 5e-083
>TAIR9_protein||AT5G07090.1 | Symbols: | 40S ribosomal protein S4 (RPS4B) |
chr5:2202410-2203805 FORWARD
Length = 263
Score = 307 bits (786), Expect = 6e-084
Identities = 149/159 (93%), Positives = 154/159 (96%)
Frame = +1
Query: 331 TNENFRLHSIRDEEAKFKLCKVRTIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 510
T FRLHSI+DEEAKFKLCKVR+IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL
Sbjct: 105 TKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 164
Query: 511 EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN 690
EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN
Sbjct: 165 EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN 224
Query: 691 VFTLGKGTKPWVSLPKGKGIKLTIIEEAKKRLAGQQAA* 807
V+T+GKGTKPWVSLPKGKGIKLTIIEEA+KRLA QQAA*
Sbjct: 225 VYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQQAA* 263
Score = 212 bits (538), Expect = 4e-055
Identities = 104/117 (88%), Positives = 110/117 (94%), Gaps = 2/117 (1%)
Frame = +1
Query: 49 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 228
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 229 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLHSIRDEEAKFKLCKVR 399
VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRL + D + +F+L ++
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRL--LYDTKGRFRLHSIK 115
>TAIR9_protein||AT5G07090.2 | Symbols: | 40S ribosomal protein S4 (RPS4B) |
chr5:2202783-2203805 FORWARD
Length = 245
Score = 307 bits (786), Expect = 6e-084
Identities = 149/159 (93%), Positives = 154/159 (96%)
Frame = +1
Query: 331 TNENFRLHSIRDEEAKFKLCKVRTIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 510
T FRLHSI+DEEAKFKLCKVR+IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL
Sbjct: 87 TKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 146
Query: 511 EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN 690
EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN
Sbjct: 147 EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN 206
Query: 691 VFTLGKGTKPWVSLPKGKGIKLTIIEEAKKRLAGQQAA* 807
V+T+GKGTKPWVSLPKGKGIKLTIIEEA+KRLA QQAA*
Sbjct: 207 VYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQQAA* 245
Score = 173 bits (437), Expect = 2e-043
Identities = 86/99 (86%), Positives = 92/99 (92%), Gaps = 2/99 (2%)
Frame = +1
Query: 103 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 282
MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT
Sbjct: 1 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 60
Query: 283 DKTYPAGFMDVVSIPKTNENFRLHSIRDEEAKFKLCKVR 399
DKTYPAGFMDVVSIPKTNENFRL + D + +F+L ++
Sbjct: 61 DKTYPAGFMDVVSIPKTNENFRL--LYDTKGRFRLHSIK 97
>TAIR9_protein||AT5G58420.1 | Symbols: | 40S ribosomal protein S4 (RPS4D) |
chr5:23619599-23620896 FORWARD
Length = 263
Score = 305 bits (780), Expect = 3e-083
Identities = 148/159 (93%), Positives = 153/159 (96%)
Frame = +1
Query: 331 TNENFRLHSIRDEEAKFKLCKVRTIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 510
T FRLHSI+DEEAKFKLCKVR+IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL
Sbjct: 105 TKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 164
Query: 511 EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN 690
E NKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN
Sbjct: 165 EANKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN 224
Query: 691 VFTLGKGTKPWVSLPKGKGIKLTIIEEAKKRLAGQQAA* 807
V+T+GKGTKPWVSLPKGKGIKLTIIEEA+KRLA QQAA*
Sbjct: 225 VYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLASQQAA* 263
Score = 212 bits (538), Expect = 4e-055
Identities = 104/117 (88%), Positives = 110/117 (94%), Gaps = 2/117 (1%)
Frame = +1
Query: 49 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 228
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 229 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLHSIRDEEAKFKLCKVR 399
VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRL + D + +F+L ++
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRL--LYDTKGRFRLHSIK 115
>TAIR9_protein||AT2G17360.1 | Symbols: | 40S ribosomal protein S4 (RPS4A) |
chr2:7546598-7548138 FORWARD
Length = 262
Score = 304 bits (778), Expect = 5e-083
Identities = 147/157 (93%), Positives = 153/157 (97%)
Frame = +1
Query: 331 TNENFRLHSIRDEEAKFKLCKVRTIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 510
T FRLHSI+DEEAKFKLCKVR+IQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL
Sbjct: 105 TKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDL 164
Query: 511 EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN 690
EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN
Sbjct: 165 EENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGN 224
Query: 691 VFTLGKGTKPWVSLPKGKGIKLTIIEEAKKRLAGQQA 801
V+T+GKGTKPWVSLPKGKGIKLTIIEEA+KRL+ QQA
Sbjct: 225 VYTIGKGTKPWVSLPKGKGIKLTIIEEARKRLSAQQA 261
Score = 212 bits (538), Expect = 4e-055
Identities = 104/117 (88%), Positives = 110/117 (94%), Gaps = 2/117 (1%)
Frame = +1
Query: 49 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 228
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 229 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLHSIRDEEAKFKLCKVR 399
VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRL + D + +F+L ++
Sbjct: 61 VISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRL--LYDTKGRFRLHSIK 115
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,001,557,611
Number of Sequences: 33410
Number of Extensions: 12001557611
Number of Successful Extensions: 381315744
Number of sequences better than 0.0: 0
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